Wall clock time and date at job start Tue Mar 9 2021 12:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52967 * 109.43425 * 2 1 4 4 C 1.53122 * 109.44844 * 178.30619 * 3 2 1 5 5 C 1.52853 * 109.22299 * 58.00712 * 4 3 2 6 6 C 1.53200 * 113.45831 * 172.75046 * 5 4 3 7 7 C 1.53543 * 83.27085 * 219.25411 * 6 5 4 8 8 N 1.46783 * 113.40750 * 73.97258 * 5 4 3 9 9 S 1.65602 * 136.09860 * 321.81916 * 8 5 4 10 10 O 1.42102 * 106.39934 * 192.50216 * 9 8 5 11 11 O 1.42091 * 106.40263 * 325.41961 * 9 8 5 12 12 C 1.76197 * 107.21693 * 78.96410 * 9 8 5 13 13 C 1.33379 * 122.54489 * 90.02735 * 12 9 8 14 14 S 1.75883 * 109.60021 * 179.97438 * 13 12 9 15 15 C 1.75894 * 90.96686 * 359.97438 * 14 13 12 16 16 C 1.50696 * 125.20138 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47006 * 244.97229 * 16 15 14 18 18 Si 1.86295 * 109.47440 * 4.97381 * 16 15 14 19 19 C 1.33388 * 109.58924 * 359.72845 * 15 14 13 20 20 C 1.52848 * 112.68143 * 303.41499 * 5 4 3 21 21 C 1.52975 * 109.44223 * 239.77997 * 2 1 3 22 22 H 1.08999 * 109.47189 * 60.00759 * 1 2 3 23 23 H 1.09002 * 109.46754 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47293 * 300.00247 * 1 2 3 25 25 H 1.08999 * 109.39921 * 119.88710 * 2 1 3 26 26 H 1.08997 * 109.48190 * 58.30879 * 3 2 1 27 27 H 1.09003 * 109.47431 * 298.30088 * 3 2 1 28 28 H 1.08997 * 109.51420 * 177.93030 * 4 3 2 29 29 H 1.08998 * 109.51541 * 298.03604 * 4 3 2 30 30 H 1.08997 * 114.22092 * 332.81927 * 6 5 4 31 31 H 1.08997 * 114.22274 * 105.68533 * 6 5 4 32 32 H 1.09004 * 113.45589 * 271.03726 * 7 6 5 33 33 H 1.09000 * 113.46099 * 140.62327 * 7 6 5 34 34 H 1.08000 * 125.20212 * 0.02562 * 13 12 9 35 35 H 1.09002 * 109.47265 * 124.97723 * 16 15 14 36 36 H 0.96700 * 113.99792 * 59.99791 * 17 16 15 37 37 H 1.48504 * 110.00010 * 180.02562 * 18 16 15 38 38 H 1.48502 * 109.99905 * 301.31713 * 18 16 15 39 39 H 1.08008 * 122.53432 * 180.24336 * 19 15 14 40 40 H 1.08997 * 109.50940 * 176.50925 * 20 5 4 41 41 H 1.09001 * 109.50687 * 296.60757 * 20 5 4 42 42 H 1.09001 * 109.46464 * 61.69396 * 21 2 1 43 43 H 1.08996 * 109.48340 * 301.68609 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4425 0.0000 4 6 3.5696 1.4431 0.0427 5 6 4.1069 0.6666 -1.1593 6 6 5.6289 0.7538 -1.3109 7 6 5.2936 0.8457 -2.8064 8 7 3.9827 1.3956 -2.4273 9 16 2.8615 2.3956 -3.1239 10 8 3.2307 2.5222 -4.4902 11 8 1.5883 1.9255 -2.7032 12 6 3.0660 3.9905 -2.4034 13 6 3.8877 4.9085 -2.9142 14 16 3.8274 6.3662 -1.9318 15 6 2.6542 5.6251 -0.8510 16 6 2.0460 6.2888 0.3576 17 8 2.4599 5.5989 1.5386 18 14 2.6120 8.0616 0.4434 19 6 2.3804 4.3882 -1.2685 20 6 3.5698 -0.7629 -1.2255 21 6 2.0392 -0.7261 -1.2465 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8921 -0.5123 0.8914 26 1 1.6509 1.9649 0.8743 27 1 1.7004 1.9473 -0.9048 28 1 3.9345 2.4695 0.0056 29 1 3.9084 0.9693 0.9640 30 1 6.0685 1.6602 -0.8948 31 1 6.1594 -0.1549 -1.0266 32 1 5.2310 -0.1255 -3.2975 33 1 5.9205 1.5533 -3.3490 34 1 4.4964 4.7773 -3.7966 35 1 0.9591 6.2577 0.2807 36 1 3.4176 5.5865 1.6716 37 1 2.0195 8.7270 1.6314 38 1 4.0941 8.1186 0.5164 39 1 1.6802 3.7442 -0.7572 40 1 3.9348 -1.2473 -2.1311 41 1 3.9093 -1.3200 -0.3523 42 1 1.7006 -0.1982 -2.1380 43 1 1.6513 -1.7446 -1.2578 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17514094_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:59 Heat of formation + Delta-G solvation = -27.193523 kcal Electronic energy + Delta-G solvation = -28469.739080 eV Core-core repulsion = 24736.688372 eV Total energy + Delta-G solvation = -3733.050708 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.68073 -39.57769 -38.63033 -37.71132 -37.47285 -36.99210 -32.00208 -31.87562 -31.75135 -29.66341 -27.24682 -26.60409 -24.95550 -24.01821 -23.10658 -21.91765 -21.47323 -20.76515 -19.36537 -18.98531 -18.24525 -17.94532 -17.81158 -16.83253 -16.43526 -16.21425 -15.66261 -15.55829 -15.37302 -15.08852 -15.04462 -14.96103 -14.41632 -14.25558 -14.09308 -13.91553 -13.82702 -13.78520 -13.43758 -13.31690 -13.20946 -12.99771 -12.92584 -12.57376 -12.50847 -12.36123 -12.30529 -12.00022 -11.79456 -11.69083 -11.55944 -11.18001 -11.02973 -10.81458 -10.72706 -10.27575 -9.99298 -9.83454 -5.09794 -0.89797 -0.50954 0.30805 0.55233 0.94879 1.14949 1.46672 1.82480 1.96829 2.61225 2.97854 3.27207 3.44465 3.53639 3.70907 3.79629 3.85000 3.85823 4.07407 4.14391 4.16689 4.30363 4.42513 4.45326 4.46493 4.54740 4.60036 4.63504 4.72753 4.74807 4.85411 4.87077 4.90658 4.96776 5.00351 5.04887 5.11011 5.12297 5.16517 5.28008 5.32435 5.38267 5.40380 5.52465 5.62295 5.80734 6.36806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.159 4.159 4 C -0.126 4.126 5 C 0.185 3.815 6 C -0.130 4.130 7 C 0.119 3.881 8 N -1.037 6.037 9 S 2.728 3.272 10 O -0.990 6.990 11 O -0.961 6.961 12 C -0.689 4.689 13 C -0.089 4.089 14 S 0.194 5.806 15 C -0.228 4.228 16 C -0.041 4.041 17 O -0.535 6.535 18 Si 0.716 3.284 19 C -0.057 4.057 20 C -0.117 4.117 21 C -0.128 4.128 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.197 0.803 35 H 0.133 0.867 36 H 0.388 0.612 37 H -0.271 1.271 38 H -0.253 1.253 39 H 0.153 0.847 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 1.003 2.020 6.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 C -0.196 4.196 4 C -0.164 4.164 5 C 0.099 3.901 6 C -0.169 4.169 7 C -0.005 4.005 8 N -0.878 5.878 9 S 2.822 3.178 10 O -0.981 6.981 11 O -0.951 6.951 12 C -0.791 4.791 13 C -0.228 4.228 14 S 0.458 5.542 15 C -0.346 4.346 16 C -0.152 4.152 17 O -0.344 6.344 18 Si 0.617 3.383 19 C -0.086 4.086 20 C -0.156 4.156 21 C -0.166 4.166 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.214 0.786 35 H 0.151 0.849 36 H 0.238 0.762 37 H -0.197 1.197 38 H -0.178 1.178 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.701 2.898 1.724 6.623 hybrid contribution -0.330 -1.522 0.793 1.747 sum 5.371 1.376 2.517 6.089 Atomic orbital electron populations 1.21829 0.96191 1.01408 1.01250 1.20966 0.94971 0.95855 0.98104 1.22340 0.95763 0.97656 1.03879 1.21904 0.95448 1.00693 0.98402 1.21466 0.95647 0.91241 0.81751 1.23546 0.93490 1.05045 0.94841 1.22754 0.80044 0.99502 0.98225 1.59991 1.35999 1.59476 1.32361 1.00412 0.72545 0.73029 0.71781 1.93529 1.84219 1.87466 1.32865 1.93477 1.40024 1.79767 1.81831 1.29819 1.12466 1.24721 1.12070 1.26149 0.98386 0.96087 1.02204 1.84280 1.37747 1.14424 1.17762 1.25115 1.05876 0.99325 1.04299 1.24598 1.03970 1.05893 0.80765 1.86625 1.29471 1.76581 1.41681 0.94371 0.80293 0.74716 0.88898 1.19784 0.99026 0.96227 0.93530 1.21793 0.95173 0.94543 1.04080 1.21725 0.95939 1.00300 0.98587 0.93774 0.92648 0.92834 0.90769 0.92226 0.89295 0.91036 0.88612 0.87905 0.87219 0.88646 0.89473 0.78562 0.84900 0.76245 1.19676 1.17780 0.83005 0.90410 0.88362 0.92556 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.19 71.98 0.66 -0.09 16 2 C -0.08 -0.22 2.67 -10.81 -0.03 -0.25 16 3 C -0.16 -0.41 3.95 30.62 0.12 -0.29 16 4 C -0.13 0.28 5.26 30.59 0.16 0.44 16 5 C 0.19 -0.56 0.93 -0.06 0.00 -0.56 16 6 C -0.13 1.06 7.61 30.84 0.23 1.30 16 7 C 0.12 -0.59 8.33 82.87 0.69 0.10 16 8 N -1.04 -0.25 3.86 -508.93 -1.97 -2.21 16 9 S 2.73 17.31 5.73 -56.49 -0.32 16.99 16 10 O -0.99 -11.95 17.61 -128.00 -2.25 -14.20 16 11 O -0.96 -10.29 12.29 -128.00 -1.57 -11.87 16 12 C -0.69 -1.97 5.89 21.21 0.12 -1.85 16 13 C -0.09 0.03 10.70 66.72 0.71 0.74 16 14 S 0.19 -0.54 20.60 -56.49 -1.16 -1.70 16 15 C -0.23 0.08 5.70 24.59 0.14 0.22 16 16 C -0.04 0.06 2.96 71.23 0.21 0.28 16 17 O -0.54 -0.13 12.88 -148.98 -1.92 -2.05 16 18 Si 0.72 -2.20 30.98 68.60 2.13 -0.07 16 19 C -0.06 -0.15 8.60 21.22 0.18 0.04 16 20 C -0.12 0.32 5.22 30.58 0.16 0.47 16 21 C -0.13 -0.36 5.15 30.62 0.16 -0.20 16 22 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.09 0.50 1.97 -2.85 -0.01 0.49 16 28 H 0.07 -0.18 7.60 -2.39 -0.02 -0.19 16 29 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.10 -0.96 8.12 -2.39 -0.02 -0.98 16 31 H 0.11 -1.27 8.10 -2.39 -0.02 -1.29 16 32 H 0.10 -0.63 7.29 -2.39 -0.02 -0.65 16 33 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.20 -0.75 8.00 -2.91 -0.02 -0.77 16 35 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.39 -2.27 8.70 -74.06 -0.64 -2.91 16 37 H -0.27 -0.94 7.11 99.48 0.71 -0.23 16 38 H -0.25 0.20 7.11 99.48 0.71 0.91 16 39 H 0.15 0.59 5.46 -2.91 -0.02 0.58 16 40 H 0.08 -0.30 7.02 -2.39 -0.02 -0.31 16 41 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.06 0.44 5.93 -2.39 -0.01 0.43 16 43 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -17.61 349.75 -3.12 -20.73 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: 0.43 Total: -5.95 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 3.53 Total: 0.34 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -1.97 Total: -2.21 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -5.75 Total: -28.12 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.13 Total: -0.07 kcal Atomic # 16 Polarization: 16.77 SS G_CDS: -1.49 Total: 15.29 kcal Total: -17.61 -3.12 -20.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17514094_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.464 kcal (2) G-P(sol) polarization free energy of solvation -17.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds