Wall clock time and date at job start Tue Mar 9 2021 13:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34219 * 117.00441 * 2 1 4 4 O 1.20831 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00228 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46991 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46961 * 180.02562 * 6 5 3 8 8 H 1.09000 * 112.85093 * 43.80192 * 7 6 5 9 9 C 1.53784 * 113.61606 * 175.00070 * 7 6 5 10 10 C 1.53778 * 87.08187 * 140.06591 * 9 7 6 11 11 H 1.08999 * 113.61546 * 219.93769 * 10 9 7 12 12 N 1.46496 * 113.61275 * 89.11626 * 10 9 7 13 13 S 1.65608 * 119.99853 * 145.00124 * 12 10 9 14 14 O 1.42104 * 106.39844 * 311.45907 * 13 12 10 15 15 O 1.42103 * 106.40157 * 178.54090 * 13 12 10 16 16 C 1.76201 * 107.21846 * 64.99774 * 13 12 10 17 17 C 1.33386 * 122.53614 * 90.02441 * 16 13 12 18 18 S 1.75891 * 109.59176 * 179.74952 * 17 16 13 19 19 C 1.75886 * 90.96733 * 0.23276 * 18 17 16 20 20 C 1.50705 * 125.20294 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47285 * 119.96782 * 20 19 18 22 22 Si 1.86301 * 109.46882 * 359.96989 * 20 19 18 23 23 C 1.33384 * 109.59693 * 359.97438 * 19 18 17 24 24 C 1.53782 * 113.69196 * 272.53693 * 7 6 5 25 25 H 1.09000 * 109.46798 * 59.99402 * 1 2 3 26 26 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46803 * 299.99687 * 1 2 3 28 28 H 1.08994 * 109.47100 * 60.00410 * 5 3 2 29 29 H 1.08997 * 109.47580 * 299.99962 * 5 3 2 30 30 H 1.08994 * 109.46982 * 60.00193 * 6 5 3 31 31 H 1.08994 * 109.47185 * 299.99941 * 6 5 3 32 32 H 1.08993 * 113.60837 * 25.51423 * 9 7 6 33 33 H 1.09000 * 113.68938 * 254.62836 * 9 7 6 34 34 H 0.96997 * 120.00344 * 324.99464 * 12 10 9 35 35 H 1.08002 * 125.20849 * 0.02562 * 17 16 13 36 36 H 1.08997 * 109.47108 * 239.97276 * 20 19 18 37 37 H 0.96696 * 114.00627 * 300.00421 * 21 20 19 38 38 H 1.48498 * 110.00153 * 180.02562 * 22 20 19 39 39 H 1.48501 * 110.00164 * 301.32257 * 22 20 19 40 40 H 1.07997 * 122.54195 * 179.97438 * 23 19 18 41 41 H 1.09003 * 113.61459 * 105.45779 * 24 7 6 42 42 H 1.08995 * 113.61323 * 334.55309 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7419 0.0011 7 6 5.5282 2.8219 0.0011 8 1 5.9887 2.1204 -0.6945 9 6 6.0700 4.2560 -0.1212 10 6 7.1400 3.8555 0.9080 11 1 7.3538 4.6335 1.6409 12 7 8.3513 3.2923 0.3064 13 16 9.8304 3.5909 0.9886 14 8 9.8920 4.9923 1.2156 15 8 10.7837 2.8882 0.2033 16 6 9.8355 2.8288 2.5772 17 6 10.2392 1.5720 2.7687 18 16 10.1102 1.1645 4.4749 19 6 9.4905 2.7691 4.8419 20 6 9.1020 3.2576 6.2136 21 8 9.9009 4.3907 6.5597 22 14 9.3788 1.8991 7.4580 23 6 9.4181 3.4880 3.7206 24 6 6.1486 2.7915 1.4078 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9564 0.7805 -0.8891 29 1 3.9558 0.7808 0.8908 30 1 3.6102 3.2358 0.8910 31 1 3.6109 3.2362 -0.8889 32 1 5.3783 5.0163 0.2413 33 1 6.4762 4.4882 -1.1057 34 1 8.2869 2.7445 -0.4915 35 1 10.5953 0.9077 1.9952 36 1 8.0496 3.5414 6.2136 37 1 10.8508 4.2110 6.5793 38 1 8.9988 2.3679 8.8148 39 1 8.5779 0.7035 7.0914 40 1 9.0633 4.5079 3.7063 41 1 6.6182 1.8400 1.6575 42 1 5.4785 3.1516 2.1884 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17523014_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:39 Heat of formation + Delta-G solvation = -132.493945 kcal Electronic energy + Delta-G solvation = -28012.899932 eV Core-core repulsion = 23793.456290 eV Total energy + Delta-G solvation = -4219.443642 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.51827 -40.61176 -39.53727 -38.23046 -37.60045 -37.57556 -36.86528 -35.17866 -32.87424 -31.87536 -29.12656 -27.30212 -27.01655 -26.66250 -24.96834 -23.53069 -21.63100 -21.47746 -20.89889 -20.06663 -19.28341 -18.68214 -18.45100 -17.89009 -17.68204 -17.66303 -17.52502 -17.03514 -16.45028 -16.21790 -15.79597 -15.58008 -15.46144 -15.19009 -14.90861 -14.48101 -14.36580 -14.28644 -14.17096 -13.96599 -13.77882 -13.58160 -13.27871 -13.16684 -13.11267 -13.02429 -12.93729 -12.78241 -12.54293 -12.37965 -12.24780 -11.96434 -11.80492 -11.71198 -11.61849 -11.39990 -11.21660 -10.79351 -10.59636 -10.22446 -9.91873 -5.28907 -0.78370 -0.52074 0.26053 0.52744 0.93937 1.10058 1.19800 1.44606 1.70807 1.76940 1.98440 2.70811 3.16220 3.29502 3.34699 3.37457 3.54747 3.59740 3.62567 3.71712 3.77653 3.98568 4.00961 4.08844 4.13643 4.19558 4.21903 4.29168 4.36072 4.41332 4.55037 4.58771 4.62260 4.63331 4.71855 4.82869 4.85016 4.89302 5.01847 5.08339 5.09812 5.33588 5.41181 5.82137 6.37002 6.72960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.457 3.543 4 O -0.507 6.507 5 C -0.113 4.113 6 C -0.100 4.100 7 C -0.111 4.111 8 H 0.095 0.905 9 C -0.137 4.137 10 C 0.123 3.877 11 H 0.107 0.893 12 N -1.096 6.096 13 S 2.711 3.289 14 O -0.946 6.946 15 O -0.955 6.955 16 C -0.685 4.685 17 C -0.082 4.082 18 S 0.157 5.843 19 C -0.228 4.228 20 C -0.026 4.026 21 O -0.532 6.532 22 Si 0.654 3.346 23 C -0.043 4.043 24 C -0.153 4.153 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.420 0.580 35 H 0.185 0.815 36 H 0.126 0.874 37 H 0.382 0.618 38 H -0.231 1.231 39 H -0.237 1.237 40 H 0.157 0.843 41 H 0.075 0.925 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -5.217 1.305 5.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.395 6.395 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.129 4.129 8 H 0.113 0.887 9 C -0.177 4.177 10 C 0.015 3.985 11 H 0.125 0.875 12 N -0.855 5.855 13 S 2.797 3.203 14 O -0.936 6.936 15 O -0.945 6.945 16 C -0.785 4.785 17 C -0.221 4.221 18 S 0.420 5.580 19 C -0.346 4.346 20 C -0.140 4.140 21 O -0.338 6.338 22 Si 0.553 3.447 23 C -0.072 4.072 24 C -0.192 4.192 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.255 0.745 35 H 0.203 0.797 36 H 0.143 0.857 37 H 0.230 0.770 38 H -0.154 1.154 39 H -0.161 1.161 40 H 0.174 0.826 41 H 0.094 0.906 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.674 -5.886 2.650 6.490 hybrid contribution -1.196 0.719 -1.040 1.741 sum -1.870 -5.166 1.610 5.726 Atomic orbital electron populations 1.23302 0.75963 1.03938 1.02698 1.86508 1.23781 1.33579 1.84021 1.23926 0.92434 0.81349 0.72259 1.90697 1.67362 1.36353 1.45042 1.21445 0.87199 1.00444 1.05975 1.21440 0.94514 0.93618 1.04169 1.22599 0.94609 0.97942 0.97793 0.88723 1.23345 0.97228 0.96993 1.00099 1.21662 0.84275 0.96018 0.96537 0.87505 1.55342 1.22567 1.67088 1.40455 1.01596 0.72021 0.73880 0.72784 1.93621 1.85390 1.28937 1.85673 1.93620 1.58036 1.75030 1.67822 1.30033 1.18840 1.05977 1.23644 1.25894 0.97568 0.97564 1.01106 1.84406 1.59299 1.12763 1.01483 1.25064 1.11020 0.97863 1.00660 1.24435 0.97990 0.97034 0.94505 1.86542 1.22042 1.34014 1.91183 0.95011 0.91434 0.77691 0.80574 1.19600 0.97820 1.00855 0.88888 1.23600 0.98413 1.00016 0.97177 0.91758 0.87915 0.91790 0.87561 0.87613 0.90578 0.90550 0.88360 0.90206 0.74512 0.79750 0.85715 0.77020 1.15390 1.16137 0.82599 0.90621 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.37 10.56 -39.23 -0.41 -0.79 16 3 C 0.46 0.52 7.96 36.01 0.29 0.81 16 4 O -0.51 -2.16 15.73 -18.75 -0.30 -2.46 16 5 C -0.11 0.28 5.80 -27.88 -0.16 0.12 16 6 C -0.10 0.23 4.34 -26.73 -0.12 0.11 16 7 C -0.11 0.40 3.47 -89.80 -0.31 0.09 16 8 H 0.09 -0.43 8.09 -51.93 -0.42 -0.85 16 9 C -0.14 0.40 7.43 -25.92 -0.19 0.21 16 10 C 0.12 -0.33 4.51 -67.12 -0.30 -0.63 16 11 H 0.11 -0.27 7.77 -51.93 -0.40 -0.67 16 12 N -1.10 2.66 5.73 -4.20 -0.02 2.64 16 13 S 2.71 1.26 5.77 -107.50 -0.62 0.64 16 14 O -0.95 -3.59 17.16 -57.17 -0.98 -4.58 16 15 O -0.95 -2.95 17.64 -57.17 -1.01 -3.96 16 16 C -0.69 0.30 5.86 -41.21 -0.24 0.06 16 17 C -0.08 0.12 10.70 29.04 0.31 0.43 16 18 S 0.16 -0.29 20.58 -107.50 -2.21 -2.51 16 19 C -0.23 0.21 5.72 -36.00 -0.21 0.01 16 20 C -0.03 0.03 2.96 36.01 0.11 0.14 16 21 O -0.53 0.27 12.86 -35.23 -0.45 -0.18 16 22 Si 0.65 -1.25 30.97 -169.99 -5.26 -6.51 16 23 C -0.04 0.01 9.56 -41.21 -0.39 -0.39 16 24 C -0.15 0.55 7.43 -25.92 -0.19 0.36 16 25 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 26 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 27 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 28 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 29 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 30 H 0.08 -0.11 7.81 -51.93 -0.41 -0.51 16 31 H 0.08 -0.09 8.10 -51.93 -0.42 -0.51 16 32 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 33 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.42 -1.75 8.78 -34.47 -0.30 -2.06 16 35 H 0.19 -0.61 8.00 -52.49 -0.42 -1.03 16 36 H 0.13 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.38 -1.58 8.70 45.56 0.40 -1.18 16 38 H -0.23 -0.21 7.11 56.52 0.40 0.20 16 39 H -0.24 0.03 7.11 56.52 0.40 0.43 16 40 H 0.16 -0.04 7.97 -52.49 -0.42 -0.46 16 41 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 42 H 0.09 -0.36 7.90 -51.93 -0.41 -0.77 16 LS Contribution 383.67 15.07 5.78 5.78 Total: 0.00 -11.33 383.67 -11.63 -22.96 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: -5.79 Total: -13.41 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.35 Total: 2.37 kcal Atomic # 7 Polarization: 2.66 SS G_CDS: -0.02 Total: 2.64 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -3.15 Total: -11.96 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -5.26 Total: -6.51 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.83 Total: -1.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -11.33 -11.63 -22.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17523014_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.530 kcal (2) G-P(sol) polarization free energy of solvation -11.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds