Wall clock time and date at job start Tue Mar 9 2021 13:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34219 * 117.00441 * 2 1 4 4 O 1.20831 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00228 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46991 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46961 * 180.02562 * 6 5 3 8 8 H 1.09000 * 112.85093 * 43.80192 * 7 6 5 9 9 C 1.53784 * 113.61606 * 175.00070 * 7 6 5 10 10 C 1.53778 * 87.08187 * 140.06591 * 9 7 6 11 11 H 1.08999 * 113.61546 * 219.93769 * 10 9 7 12 12 N 1.46496 * 113.61275 * 89.11626 * 10 9 7 13 13 S 1.65608 * 119.99853 * 145.00124 * 12 10 9 14 14 O 1.42104 * 106.39844 * 311.45907 * 13 12 10 15 15 O 1.42103 * 106.40157 * 178.54090 * 13 12 10 16 16 C 1.76201 * 107.21846 * 64.99774 * 13 12 10 17 17 C 1.33386 * 122.53614 * 90.02441 * 16 13 12 18 18 S 1.75891 * 109.59176 * 179.74952 * 17 16 13 19 19 C 1.75886 * 90.96733 * 0.23276 * 18 17 16 20 20 C 1.50705 * 125.20294 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47285 * 119.96782 * 20 19 18 22 22 Si 1.86301 * 109.46882 * 359.96989 * 20 19 18 23 23 C 1.33384 * 109.59693 * 359.97438 * 19 18 17 24 24 C 1.53782 * 113.69196 * 272.53693 * 7 6 5 25 25 H 1.09000 * 109.46798 * 59.99402 * 1 2 3 26 26 H 1.09003 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46803 * 299.99687 * 1 2 3 28 28 H 1.08994 * 109.47100 * 60.00410 * 5 3 2 29 29 H 1.08997 * 109.47580 * 299.99962 * 5 3 2 30 30 H 1.08994 * 109.46982 * 60.00193 * 6 5 3 31 31 H 1.08994 * 109.47185 * 299.99941 * 6 5 3 32 32 H 1.08993 * 113.60837 * 25.51423 * 9 7 6 33 33 H 1.09000 * 113.68938 * 254.62836 * 9 7 6 34 34 H 0.96997 * 120.00344 * 324.99464 * 12 10 9 35 35 H 1.08002 * 125.20849 * 0.02562 * 17 16 13 36 36 H 1.08997 * 109.47108 * 239.97276 * 20 19 18 37 37 H 0.96696 * 114.00627 * 300.00421 * 21 20 19 38 38 H 1.48498 * 110.00153 * 180.02562 * 22 20 19 39 39 H 1.48501 * 110.00164 * 301.32257 * 22 20 19 40 40 H 1.07997 * 122.54195 * 179.97438 * 23 19 18 41 41 H 1.09003 * 113.61459 * 105.45779 * 24 7 6 42 42 H 1.08995 * 113.61323 * 334.55309 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7419 0.0011 7 6 5.5282 2.8219 0.0011 8 1 5.9887 2.1204 -0.6945 9 6 6.0700 4.2560 -0.1212 10 6 7.1400 3.8555 0.9080 11 1 7.3538 4.6335 1.6409 12 7 8.3513 3.2923 0.3064 13 16 9.8304 3.5909 0.9886 14 8 9.8920 4.9923 1.2156 15 8 10.7837 2.8882 0.2033 16 6 9.8355 2.8288 2.5772 17 6 10.2392 1.5720 2.7687 18 16 10.1102 1.1645 4.4749 19 6 9.4905 2.7691 4.8419 20 6 9.1020 3.2576 6.2136 21 8 9.9009 4.3907 6.5597 22 14 9.3788 1.8991 7.4580 23 6 9.4181 3.4880 3.7206 24 6 6.1486 2.7915 1.4078 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9564 0.7805 -0.8891 29 1 3.9558 0.7808 0.8908 30 1 3.6102 3.2358 0.8910 31 1 3.6109 3.2362 -0.8889 32 1 5.3783 5.0163 0.2413 33 1 6.4762 4.4882 -1.1057 34 1 8.2869 2.7445 -0.4915 35 1 10.5953 0.9077 1.9952 36 1 8.0496 3.5414 6.2136 37 1 10.8508 4.2110 6.5793 38 1 8.9988 2.3679 8.8148 39 1 8.5779 0.7035 7.0914 40 1 9.0633 4.5079 3.7063 41 1 6.6182 1.8400 1.6575 42 1 5.4785 3.1516 2.1884 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17523014_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:39 Heat of formation + Delta-G solvation = -135.626691 kcal Electronic energy + Delta-G solvation = -28013.035778 eV Core-core repulsion = 23793.456290 eV Total energy + Delta-G solvation = -4219.579488 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55888 -40.42140 -39.45087 -38.37147 -37.66328 -37.50549 -37.01738 -35.05285 -32.73758 -31.78537 -29.06133 -27.20281 -26.82692 -26.45707 -24.89742 -23.39479 -21.58689 -21.42331 -20.74822 -19.95760 -19.18671 -18.70020 -18.48494 -17.81413 -17.69938 -17.61684 -17.51072 -16.90568 -16.35992 -16.13299 -15.70655 -15.43273 -15.40002 -15.05330 -14.82063 -14.43498 -14.28743 -14.22695 -14.09207 -13.90119 -13.63595 -13.47740 -13.32594 -13.23579 -13.15018 -13.03196 -12.91715 -12.65148 -12.54247 -12.20751 -12.16470 -11.85409 -11.76655 -11.63931 -11.60633 -11.24492 -11.01626 -10.68872 -10.42564 -10.12244 -9.79859 -5.15910 -0.77273 -0.43469 0.37393 0.62650 0.99685 1.14625 1.21132 1.54378 1.77564 1.85816 2.05333 2.70476 3.21736 3.43810 3.56922 3.58006 3.67406 3.72789 3.84607 3.89651 3.94581 4.16286 4.19376 4.23899 4.26720 4.29696 4.32781 4.40380 4.58759 4.65519 4.67458 4.69146 4.83157 4.88943 4.94037 4.95195 5.05673 5.08055 5.15239 5.26402 5.31113 5.39890 5.61051 6.07718 6.64591 6.68493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.454 3.546 4 O -0.547 6.547 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.101 4.101 8 H 0.111 0.889 9 C -0.142 4.142 10 C 0.116 3.884 11 H 0.102 0.898 12 N -1.084 6.084 13 S 2.728 3.272 14 O -0.986 6.986 15 O -0.983 6.983 16 C -0.690 4.690 17 C -0.083 4.083 18 S 0.188 5.812 19 C -0.234 4.234 20 C -0.032 4.032 21 O -0.550 6.550 22 Si 0.725 3.275 23 C -0.054 4.054 24 C -0.147 4.147 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.430 0.570 35 H 0.204 0.796 36 H 0.124 0.876 37 H 0.396 0.604 38 H -0.272 1.272 39 H -0.256 1.256 40 H 0.150 0.850 41 H 0.085 0.915 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -6.909 1.310 7.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.299 3.701 4 O -0.437 6.437 5 C -0.145 4.145 6 C -0.134 4.134 7 C -0.120 4.120 8 H 0.129 0.871 9 C -0.181 4.181 10 C 0.008 3.992 11 H 0.120 0.880 12 N -0.845 5.845 13 S 2.817 3.183 14 O -0.976 6.976 15 O -0.973 6.973 16 C -0.792 4.792 17 C -0.222 4.222 18 S 0.451 5.549 19 C -0.351 4.351 20 C -0.144 4.144 21 O -0.358 6.358 22 Si 0.627 3.373 23 C -0.083 4.083 24 C -0.186 4.186 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.267 0.733 35 H 0.221 0.779 36 H 0.142 0.858 37 H 0.247 0.753 38 H -0.198 1.198 39 H -0.182 1.182 40 H 0.167 0.833 41 H 0.103 0.897 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.178 -7.581 2.614 8.021 hybrid contribution -1.404 1.227 -0.985 2.109 sum -1.583 -6.355 1.629 6.748 Atomic orbital electron populations 1.23479 0.75334 1.05454 1.02273 1.86513 1.24604 1.33583 1.83751 1.24683 0.93747 0.80767 0.70904 1.90679 1.68456 1.37509 1.47036 1.21571 0.84595 1.00514 1.07825 1.21373 0.95335 0.93704 1.02951 1.22574 0.93544 0.97660 0.98181 0.87111 1.23387 0.97136 0.97643 0.99944 1.21764 0.84139 0.96557 0.96734 0.88012 1.55020 1.21636 1.67176 1.40719 1.00722 0.72067 0.72824 0.72693 1.93571 1.86181 1.31502 1.86317 1.93575 1.59622 1.75281 1.68852 1.29765 1.20183 1.06461 1.22746 1.26203 0.96581 0.97382 1.02034 1.84308 1.58361 1.11429 1.00754 1.25142 1.10932 0.98579 1.00492 1.24578 0.98022 0.97182 0.94667 1.86506 1.23420 1.34682 1.91199 0.94166 0.90304 0.75575 0.77215 1.19622 0.98474 1.00878 0.89359 1.23577 0.97856 0.99972 0.97178 0.92225 0.85461 0.92244 0.85455 0.85653 0.91777 0.91941 0.88551 0.90293 0.73279 0.77927 0.85840 0.75344 1.19770 1.18176 0.83258 0.89680 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.71 10.56 -51.31 -0.54 -1.25 16 3 C 0.45 1.14 7.96 71.24 0.57 1.71 16 4 O -0.55 -5.33 15.73 21.95 0.35 -4.99 16 5 C -0.11 0.64 5.80 29.85 0.17 0.81 16 6 C -0.10 0.45 4.34 30.60 0.13 0.58 16 7 C -0.10 0.82 3.47 -10.27 -0.04 0.79 16 8 H 0.11 -1.22 8.09 -2.39 -0.02 -1.24 16 9 C -0.14 0.81 7.43 31.12 0.23 1.04 16 10 C 0.12 -0.61 4.51 45.52 0.21 -0.41 16 11 H 0.10 -0.42 7.77 -2.39 -0.02 -0.44 16 12 N -1.08 5.40 5.73 -167.20 -0.96 4.44 16 13 S 2.73 3.99 5.77 -56.49 -0.33 3.67 16 14 O -0.99 -8.86 17.16 -128.00 -2.20 -11.06 16 15 O -0.98 -6.37 17.64 -128.00 -2.26 -8.63 16 16 C -0.69 0.71 5.86 21.22 0.12 0.83 16 17 C -0.08 0.33 10.70 66.72 0.71 1.05 16 18 S 0.19 -0.94 20.58 -56.49 -1.16 -2.10 16 19 C -0.23 0.53 5.72 24.59 0.14 0.67 16 20 C -0.03 0.08 2.96 71.24 0.21 0.30 16 21 O -0.55 0.48 12.86 -148.98 -1.92 -1.44 16 22 Si 0.73 -2.93 30.97 68.60 2.12 -0.81 16 23 C -0.05 0.01 9.56 21.22 0.20 0.21 16 24 C -0.15 1.18 7.43 31.12 0.23 1.41 16 25 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 26 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 28 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 30 H 0.06 -0.14 7.81 -2.39 -0.02 -0.16 16 31 H 0.06 -0.10 8.10 -2.39 -0.02 -0.12 16 32 H 0.10 -0.51 8.10 -2.39 -0.02 -0.53 16 33 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.43 -3.88 8.78 -96.75 -0.85 -4.73 16 35 H 0.20 -1.67 8.00 -2.91 -0.02 -1.69 16 36 H 0.12 -0.34 7.96 -2.39 -0.02 -0.36 16 37 H 0.40 -3.33 8.70 -74.06 -0.64 -3.98 16 38 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 39 H -0.26 0.23 7.11 99.48 0.71 0.93 16 40 H 0.15 0.11 7.97 -2.91 -0.02 0.08 16 41 H 0.08 -0.81 8.14 -2.39 -0.02 -0.82 16 42 H 0.10 -0.77 7.90 -2.39 -0.02 -0.79 16 Total: 0.00 -26.59 383.67 -3.19 -29.78 By element: Atomic # 1 Polarization: -17.37 SS G_CDS: -0.40 Total: -17.77 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.09 Total: 10.16 kcal Atomic # 7 Polarization: 5.40 SS G_CDS: -0.96 Total: 4.44 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -6.57 Total: -27.37 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.12 Total: -0.81 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.49 Total: 1.56 kcal Total: -26.59 -3.19 -29.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17523014_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.845 kcal (2) G-P(sol) polarization free energy of solvation -26.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds