Wall clock time and date at job start Tue Mar 9 2021 13:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47180 * 2 1 4 4 C 1.50701 * 109.47058 * 239.99702 * 2 1 3 5 5 C 1.33381 * 125.20789 * 299.99948 * 4 2 1 6 6 C 1.38420 * 114.92455 * 180.02562 * 5 4 2 7 7 S 1.76203 * 122.54217 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.39705 * 336.45838 * 7 6 5 9 9 O 1.42098 * 106.40405 * 203.54026 * 7 6 5 10 10 N 1.65595 * 107.22144 * 89.99602 * 7 6 5 11 11 C 1.46501 * 119.99729 * 64.99894 * 10 7 6 12 12 H 1.09004 * 112.85074 * 346.19992 * 11 10 7 13 13 C 1.53782 * 113.61142 * 117.50316 * 11 10 7 14 14 C 1.53962 * 87.11063 * 89.18830 * 13 11 10 15 15 H 1.08993 * 113.61598 * 270.84305 * 14 13 11 16 16 C 1.52999 * 113.66529 * 139.88900 * 14 13 11 17 17 N 1.46494 * 109.47391 * 87.55384 * 16 14 13 18 18 C 1.35306 * 125.87466 * 124.99710 * 17 16 14 19 19 C 1.35346 * 106.17910 * 180.02562 * 18 17 16 20 20 N 1.33766 * 106.49814 * 0.02562 * 19 18 17 21 21 N 1.28634 * 108.88345 * 359.73313 * 20 19 18 22 22 C 1.53781 * 113.61619 * 215.00161 * 11 10 7 23 23 C 1.33385 * 114.91927 * 0.24909 * 6 5 4 24 24 S 1.75886 * 109.59578 * 359.63441 * 23 6 5 25 25 H 0.96706 * 113.99706 * 60.00213 * 1 2 3 26 26 H 1.09003 * 109.47061 * 119.99677 * 2 1 3 27 27 H 1.48506 * 109.99938 * 298.67886 * 3 2 1 28 28 H 1.48503 * 110.00190 * 59.99443 * 3 2 1 29 29 H 1.08003 * 122.53768 * 0.05770 * 5 4 2 30 30 H 0.97005 * 120.00297 * 245.00471 * 10 7 6 31 31 H 1.08997 * 113.61668 * 203.66381 * 13 11 10 32 32 H 1.08998 * 113.61674 * 334.48890 * 13 11 10 33 33 H 1.09002 * 109.47053 * 207.55709 * 16 14 13 34 34 H 1.09004 * 109.47121 * 327.55345 * 16 14 13 35 35 H 1.08003 * 126.90932 * 0.02562 * 18 17 16 36 36 H 1.08008 * 126.75155 * 180.02562 * 19 18 17 37 37 H 1.09002 * 113.61445 * 25.43587 * 22 11 10 38 38 H 1.09002 * 113.61408 * 156.25317 * 22 11 10 39 39 H 1.08008 * 125.19905 * 179.75825 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6739 -1.9812 -1.5437 6 6 2.2449 -2.4175 -2.7267 7 16 2.0355 -4.0594 -3.3312 8 8 1.7262 -4.8659 -2.2028 9 8 3.1385 -4.3145 -4.1899 10 7 0.6859 -4.0602 -4.2906 11 6 0.6698 -3.2839 -5.5329 12 1 1.4920 -2.5711 -5.5973 13 6 0.4985 -4.1452 -6.7953 14 6 -1.0205 -3.9762 -6.6099 15 1 -1.4716 -4.7434 -5.9807 16 6 -1.7789 -3.7596 -7.9210 17 7 -2.1376 -5.0576 -8.4979 18 6 -3.3842 -5.4547 -8.8427 19 6 -3.2585 -6.7110 -9.3304 20 7 -1.9582 -7.0172 -9.2605 21 7 -1.3203 -6.0147 -8.7677 22 6 -0.7028 -2.6721 -5.8594 23 6 2.9702 -1.5026 -3.3717 24 16 2.9475 0.0090 -2.4728 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5614 2.4679 1.2084 29 1 1.0656 -2.6211 -0.9215 30 1 -0.0942 -4.5747 -4.0301 31 1 0.8816 -3.6742 -7.7006 32 1 0.8439 -5.1718 -6.6737 33 1 -2.6849 -3.1857 -7.7261 34 1 -1.1463 -3.2134 -8.6207 35 1 -4.2963 -4.8840 -8.7478 36 1 -4.0519 -7.3421 -9.7028 37 1 -1.3285 -2.5099 -4.9817 38 1 -0.6480 -1.7975 -6.5076 39 1 3.4902 -1.6647 -4.3044 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567534_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:00 Heat of formation + Delta-G solvation = 68.922294 kcal Electronic energy + Delta-G solvation = -26925.628410 eV Core-core repulsion = 22899.553202 eV Total energy + Delta-G solvation = -4026.075208 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.15216 -40.80566 -39.61639 -38.25483 -37.74726 -36.89345 -35.95665 -33.78252 -31.94788 -31.93280 -29.52215 -27.33592 -26.97064 -25.04228 -24.92212 -23.54277 -22.45981 -21.57174 -21.08673 -20.21909 -19.24618 -18.88183 -18.47617 -18.01112 -17.72512 -17.32461 -17.22091 -16.52916 -16.21284 -15.97921 -15.73263 -15.56209 -15.52858 -15.29821 -15.00486 -14.46306 -14.30781 -14.19423 -13.91430 -13.81885 -13.50194 -13.35892 -13.20801 -13.07956 -12.95582 -12.61710 -12.53307 -12.40849 -12.38958 -12.04802 -11.82023 -11.67863 -11.53015 -11.02134 -10.94766 -10.71088 -10.32283 -10.31033 -9.94016 -5.23960 -0.83594 -0.57380 0.21774 0.48163 0.66209 0.91305 1.04788 1.33191 1.37124 1.70269 1.73626 1.91789 2.65253 3.02430 3.07943 3.14033 3.23135 3.29559 3.40950 3.50457 3.55035 3.71556 3.74914 3.83330 3.88416 4.00448 4.13029 4.14457 4.31005 4.33214 4.38184 4.45696 4.53633 4.62564 4.69321 4.78188 4.81023 4.97318 4.97842 5.15070 5.24000 5.60435 5.72956 6.13576 7.61136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.035 4.035 3 Si 0.653 3.347 4 C -0.227 4.227 5 C -0.042 4.042 6 C -0.685 4.685 7 S 2.709 3.291 8 O -0.949 6.949 9 O -0.947 6.947 10 N -1.097 6.097 11 C 0.128 3.872 12 H 0.104 0.896 13 C -0.138 4.138 14 C -0.126 4.126 15 H 0.100 0.900 16 C 0.123 3.877 17 N -0.291 5.291 18 C -0.054 4.054 19 C -0.051 4.051 20 N -0.273 5.273 21 N -0.078 5.078 22 C -0.136 4.136 23 C -0.088 4.088 24 S 0.162 5.838 25 H 0.377 0.623 26 H 0.131 0.869 27 H -0.240 1.240 28 H -0.232 1.232 29 H 0.157 0.843 30 H 0.421 0.579 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.190 0.810 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 8.376 -1.155 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.147 4.147 3 Si 0.551 3.449 4 C -0.344 4.344 5 C -0.071 4.071 6 C -0.785 4.785 7 S 2.795 3.205 8 O -0.939 6.939 9 O -0.937 6.937 10 N -0.855 5.855 11 C 0.019 3.981 12 H 0.122 0.878 13 C -0.178 4.178 14 C -0.145 4.145 15 H 0.118 0.882 16 C 0.002 3.998 17 N -0.085 5.085 18 C -0.205 4.205 19 C -0.208 4.208 20 N -0.139 5.139 21 N -0.058 5.058 22 C -0.176 4.176 23 C -0.228 4.228 24 S 0.426 5.574 25 H 0.225 0.775 26 H 0.148 0.852 27 H -0.164 1.164 28 H -0.155 1.155 29 H 0.174 0.826 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.207 0.793 36 H 0.207 0.793 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.391 9.336 -0.623 9.365 hybrid contribution -3.417 -0.559 -0.152 3.465 sum -3.808 8.777 -0.775 9.599 Atomic orbital electron populations 1.86657 1.17055 1.79848 1.49173 1.24430 0.83916 1.10186 0.96149 0.95179 0.91691 0.74849 0.83161 1.25019 1.07707 0.98898 1.02811 1.19600 0.98444 0.94751 0.94325 1.30044 1.14149 1.26398 1.07895 1.01689 0.72907 0.72970 0.72916 1.93627 1.83951 1.65558 1.50783 1.93630 1.50542 1.83046 1.66452 1.55388 1.34837 1.61850 1.33435 1.21572 0.98916 0.93550 0.84023 0.87795 1.23526 0.94002 1.02502 0.97723 1.22935 0.96903 0.99621 0.95080 0.88161 1.22229 1.02475 0.79593 0.95479 1.47543 1.05821 1.14303 1.40852 1.23733 0.90604 0.98936 1.07196 1.23686 0.95629 0.95676 1.05848 1.75179 1.04968 1.18705 1.15012 1.78354 1.18858 0.92737 1.15849 1.23381 0.96641 0.96678 1.00872 1.25952 0.98138 0.95827 1.02834 1.84410 1.46413 1.12220 1.14388 0.77518 0.85189 1.16370 1.15542 0.82556 0.74403 0.88277 0.89484 0.87359 0.87867 0.79330 0.79347 0.89790 0.88048 0.79674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.21 12.86 -35.23 -0.45 -0.24 16 2 C -0.03 0.05 2.96 36.01 0.11 0.16 16 3 Si 0.65 -1.37 30.97 -169.99 -5.26 -6.63 16 4 C -0.23 0.23 5.72 -36.00 -0.21 0.02 16 5 C -0.04 0.00 9.56 -41.21 -0.39 -0.39 16 6 C -0.69 0.34 5.86 -41.21 -0.24 0.10 16 7 S 2.71 1.89 5.74 -107.50 -0.62 1.27 16 8 O -0.95 -3.87 17.63 -57.17 -1.01 -4.88 16 9 O -0.95 -3.25 17.39 -57.17 -0.99 -4.24 16 10 N -1.10 2.54 5.73 -4.20 -0.02 2.52 16 11 C 0.13 -0.46 4.44 -67.12 -0.30 -0.76 16 12 H 0.10 -0.51 7.95 -51.93 -0.41 -0.92 16 13 C -0.14 0.35 7.44 -25.82 -0.19 0.15 16 14 C -0.13 0.50 3.60 -89.71 -0.32 0.17 16 15 H 0.10 -0.29 8.12 -51.93 -0.42 -0.71 16 16 C 0.12 -0.52 6.29 -4.05 -0.03 -0.55 16 17 N -0.29 0.08 3.44 -61.27 -0.21 -0.13 16 18 C -0.05 0.07 11.57 -17.05 -0.20 -0.13 16 19 C -0.05 -0.06 12.05 -17.74 -0.21 -0.27 16 20 N -0.27 -1.31 12.41 30.23 0.38 -0.94 16 21 N -0.08 -0.28 12.94 60.35 0.78 0.50 16 22 C -0.14 0.76 7.42 -25.92 -0.19 0.57 16 23 C -0.09 0.16 10.60 29.04 0.31 0.47 16 24 S 0.16 -0.35 20.58 -107.50 -2.21 -2.57 16 25 H 0.38 -1.33 8.70 45.56 0.40 -0.94 16 26 H 0.13 -0.26 7.96 -51.93 -0.41 -0.68 16 27 H -0.24 0.18 7.11 56.52 0.40 0.58 16 28 H -0.23 -0.18 7.11 56.52 0.40 0.22 16 29 H 0.16 0.00 7.97 -52.48 -0.42 -0.42 16 30 H 0.42 -1.48 8.80 -34.47 -0.30 -1.78 16 31 H 0.10 -0.34 7.90 -51.93 -0.41 -0.75 16 32 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.11 -0.74 8.07 -51.93 -0.42 -1.16 16 34 H 0.10 -0.53 7.85 -51.93 -0.41 -0.94 16 35 H 0.19 -0.98 8.06 -52.48 -0.42 -1.40 16 36 H 0.19 -0.34 8.06 -52.48 -0.42 -0.76 16 37 H 0.08 -0.48 8.14 -51.93 -0.42 -0.90 16 38 H 0.10 -0.73 8.10 -51.93 -0.42 -1.15 16 39 H 0.19 -0.72 8.00 -52.48 -0.42 -1.14 16 LS Contribution 363.22 15.07 5.47 5.47 Total: 0.00 -13.03 363.22 -10.56 -23.59 By element: Atomic # 1 Polarization: -8.73 SS G_CDS: -4.54 Total: -13.27 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.87 Total: -0.46 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: 0.92 Total: 1.95 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -2.46 Total: -9.36 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.26 Total: -6.63 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.83 Total: -1.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -13.03 -10.56 -23.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567534_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.513 kcal (2) G-P(sol) polarization free energy of solvation -13.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds