Wall clock time and date at job start Tue Mar 9 2021 13:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.46829 * 2 1 4 4 C 1.50694 * 109.47198 * 240.00011 * 2 1 3 5 5 C 1.33397 * 125.20351 * 300.00168 * 4 2 1 6 6 C 1.38423 * 114.92244 * 179.97438 * 5 4 2 7 7 S 1.76195 * 122.53991 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40348 * 336.45430 * 7 6 5 9 9 O 1.42101 * 106.39919 * 203.53835 * 7 6 5 10 10 N 1.65603 * 107.22086 * 89.99766 * 7 6 5 11 11 C 1.46504 * 119.99756 * 64.99723 * 10 7 6 12 12 H 1.08995 * 112.90780 * 353.54979 * 11 10 7 13 13 C 1.53781 * 113.61136 * 124.79623 * 11 10 7 14 14 C 1.53787 * 87.08025 * 89.11366 * 13 11 10 15 15 H 1.09004 * 113.61376 * 139.97820 * 14 13 11 16 16 N 1.46493 * 113.61833 * 270.80151 * 14 13 11 17 17 C 1.34942 * 126.04211 * 154.88387 * 16 14 13 18 18 C 1.35322 * 107.75160 * 179.83684 * 17 16 14 19 19 C 1.39875 * 107.91525 * 0.42572 * 18 17 16 20 20 N 1.30837 * 108.20054 * 359.73686 * 19 18 17 21 21 C 1.53779 * 113.61211 * 222.29529 * 11 10 7 22 22 C 1.33392 * 114.92080 * 0.24183 * 6 5 4 23 23 S 1.75884 * 125.20383 * 119.95626 * 4 2 1 24 24 H 0.96697 * 114.00495 * 60.00293 * 1 2 3 25 25 H 1.09001 * 109.47202 * 119.99739 * 2 1 3 26 26 H 1.48499 * 110.00138 * 60.00350 * 3 2 1 27 27 H 1.48507 * 109.99418 * 181.31954 * 3 2 1 28 28 H 1.07992 * 122.53794 * 359.93878 * 5 4 2 29 29 H 0.96993 * 119.99545 * 244.99766 * 10 7 6 30 30 H 1.09001 * 113.61892 * 334.57172 * 13 11 10 31 31 H 1.08991 * 113.61614 * 203.65915 * 13 11 10 32 32 H 1.08001 * 126.12864 * 0.02562 * 17 16 14 33 33 H 1.07999 * 126.04169 * 180.16006 * 18 17 16 34 34 H 1.07998 * 125.89709 * 179.71404 * 19 18 17 35 35 H 1.08995 * 113.61194 * 156.33963 * 21 11 10 36 36 H 1.09000 * 113.61805 * 25.43025 * 21 11 10 37 37 H 1.07995 * 125.20622 * 179.75842 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6738 -1.9812 -1.5437 6 6 2.2439 -2.4172 -2.7273 7 16 2.0343 -4.0589 -3.3319 8 8 1.7261 -4.8658 -2.2035 9 8 3.1366 -4.3136 -4.1916 10 7 0.6838 -4.0598 -4.2902 11 6 0.6666 -3.2832 -5.5324 12 1 1.5543 -2.6632 -5.6574 13 6 0.3181 -4.1180 -6.7760 14 6 -1.1561 -3.7887 -6.4870 15 1 -1.7398 -3.5767 -7.3829 16 7 -1.8091 -4.7520 -5.5973 17 6 -2.8759 -4.5072 -4.8080 18 6 -3.1734 -5.6515 -4.1498 19 6 -2.2509 -6.6265 -4.5433 20 7 -1.4326 -6.0884 -5.4109 21 6 -0.6514 -2.5266 -5.7676 22 6 2.9685 -1.5020 -3.3728 23 16 2.9459 0.0096 -2.4737 24 1 -0.3934 0.4416 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5614 2.4679 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 1.0671 -2.6215 -0.9207 29 1 -0.0958 -4.5745 -4.0291 30 1 0.5574 -5.1764 -6.6726 31 1 0.6869 -3.6887 -7.7074 32 1 -3.4004 -3.5672 -4.7198 33 1 -3.9780 -5.7867 -3.4422 34 1 -2.2193 -7.6471 -4.1915 35 1 -0.5476 -1.6623 -6.4235 36 1 -1.1948 -2.3003 -4.8502 37 1 3.4877 -1.6637 -4.3059 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567564_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:15 Heat of formation + Delta-G solvation = 57.604362 kcal Electronic energy + Delta-G solvation = -25930.482076 eV Core-core repulsion = 22124.879615 eV Total energy + Delta-G solvation = -3805.602461 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45460 -40.06264 -39.56375 -38.20223 -37.62714 -36.84840 -34.33410 -32.02433 -31.90932 -30.87948 -27.31349 -27.03968 -25.95498 -24.97496 -22.68306 -21.81060 -21.51136 -20.52026 -20.31131 -19.22705 -18.81679 -18.05380 -17.94755 -17.68029 -17.17571 -16.77596 -16.40423 -15.90076 -15.52592 -15.37492 -15.09208 -15.01709 -14.72007 -14.40361 -14.26040 -14.17966 -13.99449 -13.82626 -13.58584 -13.34654 -13.16488 -13.04577 -12.91743 -12.78462 -12.55021 -12.28499 -12.18090 -11.89099 -11.69693 -11.45793 -10.79287 -10.68931 -10.33489 -10.25389 -9.93826 -9.53040 -5.32161 -0.79748 -0.55154 0.23223 0.49609 0.93382 0.95139 1.06000 1.43134 1.44303 1.76505 1.93790 1.98772 2.69845 2.95240 3.06343 3.16338 3.30959 3.42460 3.54514 3.65947 3.74552 3.84027 3.90699 4.09204 4.14943 4.28908 4.30244 4.39876 4.45949 4.57349 4.58422 4.62787 4.83447 4.85973 4.90274 4.99765 5.10461 5.11922 5.71065 5.82811 6.06603 6.32448 6.77038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.028 4.028 3 Si 0.656 3.344 4 C -0.228 4.228 5 C -0.042 4.042 6 C -0.685 4.685 7 S 2.707 3.293 8 O -0.949 6.949 9 O -0.950 6.950 10 N -1.092 6.092 11 C 0.129 3.871 12 H 0.108 0.892 13 C -0.147 4.147 14 C 0.129 3.871 15 H 0.106 0.894 16 N -0.362 5.362 17 C 0.053 3.947 18 C -0.270 4.270 19 C 0.044 3.956 20 N -0.292 5.292 21 C -0.156 4.156 22 C -0.088 4.088 23 S 0.160 5.840 24 H 0.380 0.620 25 H 0.127 0.873 26 H -0.230 1.230 27 H -0.237 1.237 28 H 0.156 0.844 29 H 0.421 0.579 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.185 0.815 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 7.209 -4.047 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.141 4.141 3 Si 0.555 3.445 4 C -0.346 4.346 5 C -0.070 4.070 6 C -0.785 4.785 7 S 2.794 3.206 8 O -0.939 6.939 9 O -0.939 6.939 10 N -0.852 5.852 11 C 0.021 3.979 12 H 0.126 0.874 13 C -0.187 4.187 14 C 0.026 3.974 15 H 0.124 0.876 16 N -0.145 5.145 17 C -0.092 4.092 18 C -0.300 4.300 19 C -0.142 4.142 20 N -0.113 5.113 21 C -0.196 4.196 22 C -0.227 4.227 23 S 0.424 5.576 24 H 0.227 0.773 25 H 0.144 0.856 26 H -0.153 1.153 27 H -0.161 1.161 28 H 0.174 0.826 29 H 0.258 0.742 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.190 0.810 33 H 0.167 0.833 34 H 0.202 0.798 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.397 8.273 -3.961 9.181 hybrid contribution -1.881 -1.331 1.071 2.541 sum -2.278 6.942 -2.890 7.857 Atomic orbital electron populations 1.86553 1.16446 1.81617 1.49064 1.24476 0.85302 1.09231 0.95084 0.95170 0.82172 0.77275 0.89898 1.25072 1.07703 0.98930 1.02905 1.19598 0.98364 0.94750 0.94328 1.30071 1.14022 1.26484 1.07918 1.01711 0.72910 0.73021 0.72998 1.93619 1.83948 1.65518 1.50817 1.93617 1.50750 1.83121 1.66449 1.55416 1.35016 1.61630 1.33172 1.21640 0.99079 0.92890 0.84322 0.87376 1.23626 0.92419 1.04000 0.98613 1.22171 0.95251 0.87844 0.92118 0.87626 1.48465 1.23769 1.08617 1.33662 1.22511 0.91483 1.00798 0.94451 1.21606 1.06170 0.93003 1.09208 1.24037 0.93701 1.00721 0.95701 1.77423 1.23628 0.89507 1.20787 1.23898 0.96817 0.96640 1.02263 1.25929 0.98117 0.95900 1.02756 1.84360 1.46781 1.12360 1.14096 0.77251 0.85618 1.15345 1.16120 0.82602 0.74207 0.88066 0.86831 0.81011 0.83321 0.79799 0.86357 0.89481 0.79703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.46 12.86 -35.23 -0.45 0.00 16 2 C -0.03 0.03 2.96 36.00 0.11 0.13 16 3 Si 0.66 -1.22 30.97 -169.99 -5.26 -6.48 16 4 C -0.23 0.10 5.72 -36.00 -0.21 -0.11 16 5 C -0.04 -0.03 9.56 -41.21 -0.39 -0.43 16 6 C -0.69 -0.33 5.86 -41.21 -0.24 -0.57 16 7 S 2.71 6.13 5.73 -107.50 -0.62 5.51 16 8 O -0.95 -5.47 17.63 -57.17 -1.01 -6.48 16 9 O -0.95 -4.30 17.39 -57.17 -0.99 -5.29 16 10 N -1.09 -0.05 5.70 -4.20 -0.02 -0.07 16 11 C 0.13 -0.33 4.45 -67.12 -0.30 -0.62 16 12 H 0.11 -0.47 8.02 -51.93 -0.42 -0.89 16 13 C -0.15 0.32 7.50 -25.92 -0.19 0.13 16 14 C 0.13 -0.33 4.89 -67.11 -0.33 -0.66 16 15 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16 16 N -0.36 0.00 2.42 -54.07 -0.13 -0.13 16 17 C 0.05 -0.05 11.02 -17.22 -0.19 -0.24 16 18 C -0.27 -0.03 10.80 -40.01 -0.43 -0.46 16 19 C 0.04 0.06 12.03 -17.36 -0.21 -0.15 16 20 N -0.29 -0.73 10.86 30.63 0.33 -0.39 16 21 C -0.16 0.72 7.54 -25.92 -0.20 0.53 16 22 C -0.09 0.10 10.70 29.04 0.31 0.42 16 23 S 0.16 -0.28 20.58 -107.50 -2.21 -2.50 16 24 H 0.38 -1.88 8.70 45.56 0.40 -1.49 16 25 H 0.13 -0.07 7.96 -51.93 -0.41 -0.48 16 26 H -0.23 -0.21 7.11 56.52 0.40 0.20 16 27 H -0.24 -0.08 7.11 56.52 0.40 0.33 16 28 H 0.16 0.18 7.96 -52.49 -0.42 -0.24 16 29 H 0.42 0.38 6.63 -34.47 -0.23 0.15 16 30 H 0.10 0.06 7.51 -51.93 -0.39 -0.33 16 31 H 0.11 -0.52 8.14 -51.93 -0.42 -0.95 16 32 H 0.17 -0.66 8.06 -52.49 -0.42 -1.09 16 33 H 0.15 -0.22 8.06 -52.49 -0.42 -0.64 16 34 H 0.19 -0.16 8.06 -52.49 -0.42 -0.58 16 35 H 0.12 -0.83 8.14 -51.93 -0.42 -1.26 16 36 H 0.09 -0.38 7.82 -51.93 -0.41 -0.79 16 37 H 0.19 -0.63 8.00 -52.49 -0.42 -1.05 16 LS Contribution 342.59 15.07 5.16 5.16 Total: 0.00 -11.12 342.59 -11.51 -22.63 By element: Atomic # 1 Polarization: -5.90 SS G_CDS: -4.03 Total: -9.93 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.27 Total: -2.04 kcal Atomic # 7 Polarization: -0.78 SS G_CDS: 0.18 Total: -0.60 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -2.46 Total: -11.77 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.26 Total: -6.48 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -2.83 Total: 3.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -11.12 -11.51 -22.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.236 kcal (2) G-P(sol) polarization free energy of solvation -11.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds