Wall clock time and date at job start Tue Mar 9 2021 13:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.46829 * 2 1 4 4 C 1.50694 * 109.47198 * 240.00011 * 2 1 3 5 5 C 1.33397 * 125.20351 * 300.00168 * 4 2 1 6 6 C 1.38423 * 114.92244 * 179.97438 * 5 4 2 7 7 S 1.76195 * 122.53991 * 179.97438 * 6 5 4 8 8 O 1.42099 * 106.40348 * 336.45430 * 7 6 5 9 9 O 1.42101 * 106.39919 * 203.53835 * 7 6 5 10 10 N 1.65603 * 107.22086 * 89.99766 * 7 6 5 11 11 C 1.46504 * 119.99756 * 64.99723 * 10 7 6 12 12 H 1.08995 * 112.90780 * 353.54979 * 11 10 7 13 13 C 1.53781 * 113.61136 * 124.79623 * 11 10 7 14 14 C 1.53787 * 87.08025 * 89.11366 * 13 11 10 15 15 H 1.09004 * 113.61376 * 139.97820 * 14 13 11 16 16 N 1.46493 * 113.61833 * 270.80151 * 14 13 11 17 17 C 1.34942 * 126.04211 * 154.88387 * 16 14 13 18 18 C 1.35322 * 107.75160 * 179.83684 * 17 16 14 19 19 C 1.39875 * 107.91525 * 0.42572 * 18 17 16 20 20 N 1.30837 * 108.20054 * 359.73686 * 19 18 17 21 21 C 1.53779 * 113.61211 * 222.29529 * 11 10 7 22 22 C 1.33392 * 114.92080 * 0.24183 * 6 5 4 23 23 S 1.75884 * 125.20383 * 119.95626 * 4 2 1 24 24 H 0.96697 * 114.00495 * 60.00293 * 1 2 3 25 25 H 1.09001 * 109.47202 * 119.99739 * 2 1 3 26 26 H 1.48499 * 110.00138 * 60.00350 * 3 2 1 27 27 H 1.48507 * 109.99418 * 181.31954 * 3 2 1 28 28 H 1.07992 * 122.53794 * 359.93878 * 5 4 2 29 29 H 0.96993 * 119.99545 * 244.99766 * 10 7 6 30 30 H 1.09001 * 113.61892 * 334.57172 * 13 11 10 31 31 H 1.08991 * 113.61614 * 203.65915 * 13 11 10 32 32 H 1.08001 * 126.12864 * 0.02562 * 17 16 14 33 33 H 1.07999 * 126.04169 * 180.16006 * 18 17 16 34 34 H 1.07998 * 125.89709 * 179.71404 * 19 18 17 35 35 H 1.08995 * 113.61194 * 156.33963 * 21 11 10 36 36 H 1.09000 * 113.61805 * 25.43025 * 21 11 10 37 37 H 1.07995 * 125.20622 * 179.75842 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6738 -1.9812 -1.5437 6 6 2.2439 -2.4172 -2.7273 7 16 2.0343 -4.0589 -3.3319 8 8 1.7261 -4.8658 -2.2035 9 8 3.1366 -4.3136 -4.1916 10 7 0.6838 -4.0598 -4.2902 11 6 0.6666 -3.2832 -5.5324 12 1 1.5543 -2.6632 -5.6574 13 6 0.3181 -4.1180 -6.7760 14 6 -1.1561 -3.7887 -6.4870 15 1 -1.7398 -3.5767 -7.3829 16 7 -1.8091 -4.7520 -5.5973 17 6 -2.8759 -4.5072 -4.8080 18 6 -3.1734 -5.6515 -4.1498 19 6 -2.2509 -6.6265 -4.5433 20 7 -1.4326 -6.0884 -5.4109 21 6 -0.6514 -2.5266 -5.7676 22 6 2.9685 -1.5020 -3.3728 23 16 2.9459 0.0096 -2.4737 24 1 -0.3934 0.4416 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5614 2.4679 1.2085 27 1 3.5346 1.7702 -0.0321 28 1 1.0671 -2.6215 -0.9207 29 1 -0.0958 -4.5745 -4.0291 30 1 0.5574 -5.1764 -6.6726 31 1 0.6869 -3.6887 -7.7074 32 1 -3.4004 -3.5672 -4.7198 33 1 -3.9780 -5.7867 -3.4422 34 1 -2.2193 -7.6471 -4.1915 35 1 -0.5476 -1.6623 -6.4235 36 1 -1.1948 -2.3003 -4.8502 37 1 3.4877 -1.6637 -4.3059 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567564_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:15 Heat of formation + Delta-G solvation = 53.400809 kcal Electronic energy + Delta-G solvation = -25930.664355 eV Core-core repulsion = 22124.879615 eV Total energy + Delta-G solvation = -3805.784740 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35979 -39.88850 -39.51969 -38.47346 -37.55200 -37.12797 -34.27662 -31.96994 -31.85505 -30.82658 -27.25605 -26.74488 -25.79650 -24.96346 -22.58917 -21.76564 -21.52123 -20.49227 -20.22055 -19.16887 -18.89547 -17.94209 -17.91134 -17.67919 -17.11464 -16.65178 -16.33276 -15.98329 -15.48681 -15.29220 -15.03421 -14.97452 -14.60671 -14.34946 -14.19114 -14.05054 -13.96517 -13.70295 -13.63026 -13.45158 -13.34460 -13.09770 -12.96825 -12.66914 -12.57487 -12.23489 -12.00769 -11.73491 -11.65735 -11.39278 -10.70457 -10.57857 -10.29496 -10.19157 -9.84946 -9.47262 -5.19746 -0.89119 -0.51857 0.31341 0.55363 0.93136 0.99211 1.15853 1.53637 1.59709 1.85485 1.93270 1.97564 2.57355 3.13451 3.18483 3.33247 3.40060 3.61796 3.67366 3.86506 3.96613 4.01553 4.09581 4.17436 4.19270 4.36057 4.53383 4.60996 4.71710 4.74328 4.80705 4.87671 4.89373 4.95544 4.98197 5.09612 5.16974 5.31279 5.71989 5.82712 6.22497 6.65837 6.78398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.037 4.037 3 Si 0.741 3.259 4 C -0.234 4.234 5 C -0.059 4.059 6 C -0.690 4.690 7 S 2.719 3.281 8 O -0.996 6.996 9 O -0.979 6.979 10 N -1.090 6.090 11 C 0.111 3.889 12 H 0.129 0.871 13 C -0.152 4.152 14 C 0.115 3.885 15 H 0.123 0.877 16 N -0.361 5.361 17 C 0.058 3.942 18 C -0.289 4.289 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.134 4.134 22 C -0.085 4.085 23 S 0.210 5.790 24 H 0.398 0.602 25 H 0.116 0.884 26 H -0.270 1.270 27 H -0.262 1.262 28 H 0.142 0.858 29 H 0.416 0.584 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.205 0.795 33 H 0.160 0.840 34 H 0.192 0.808 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 10.030 -5.346 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.149 4.149 3 Si 0.643 3.357 4 C -0.351 4.351 5 C -0.088 4.088 6 C -0.793 4.793 7 S 2.809 3.191 8 O -0.986 6.986 9 O -0.969 6.969 10 N -0.850 5.850 11 C 0.004 3.996 12 H 0.147 0.853 13 C -0.191 4.191 14 C 0.013 3.987 15 H 0.140 0.860 16 N -0.145 5.145 17 C -0.089 4.089 18 C -0.318 4.318 19 C -0.161 4.161 20 N -0.153 5.153 21 C -0.174 4.174 22 C -0.225 4.225 23 S 0.474 5.526 24 H 0.248 0.752 25 H 0.133 0.867 26 H -0.196 1.196 27 H -0.188 1.188 28 H 0.160 0.840 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.222 0.778 33 H 0.177 0.823 34 H 0.208 0.792 35 H 0.172 0.828 36 H 0.107 0.893 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.623 11.050 -5.301 12.271 hybrid contribution -1.809 -2.131 1.474 3.160 sum -2.432 8.919 -3.827 10.006 Atomic orbital electron populations 1.86516 1.16440 1.82143 1.50396 1.24657 0.85534 1.10070 0.94628 0.94248 0.79227 0.74449 0.87784 1.25198 1.07732 0.98719 1.03500 1.19566 0.99183 0.95314 0.94699 1.29619 1.15766 1.25440 1.08441 1.00926 0.72711 0.73354 0.72158 1.93550 1.84618 1.67746 1.52694 1.93570 1.52206 1.84136 1.66953 1.55236 1.33788 1.62111 1.33901 1.22057 1.01502 0.93225 0.82856 0.85314 1.23723 0.93164 1.02179 1.00054 1.22539 0.95068 0.88259 0.92788 0.85957 1.48712 1.23891 1.08121 1.33740 1.23025 0.90918 1.01606 0.93304 1.21859 1.06604 0.93285 1.10080 1.24337 0.94162 1.01597 0.95980 1.77357 1.24784 0.91251 1.21924 1.23914 0.94436 0.96391 1.02620 1.26297 0.96930 0.95881 1.03360 1.84210 1.45152 1.10878 1.12394 0.75187 0.86652 1.19565 1.18795 0.83990 0.74705 0.91509 0.84156 0.77840 0.82284 0.79158 0.82785 0.89323 0.77435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.07 12.86 -148.98 -1.92 -0.84 16 2 C -0.04 0.07 2.96 71.23 0.21 0.29 16 3 Si 0.74 -3.30 30.97 68.60 2.12 -1.17 16 4 C -0.23 0.31 5.72 24.59 0.14 0.45 16 5 C -0.06 -0.13 9.56 21.22 0.20 0.07 16 6 C -0.69 -0.81 5.86 21.22 0.12 -0.69 16 7 S 2.72 16.88 5.73 -56.49 -0.32 16.55 16 8 O -1.00 -14.53 17.63 -128.00 -2.26 -16.79 16 9 O -0.98 -10.26 17.39 -128.00 -2.23 -12.48 16 10 N -1.09 -1.25 5.70 -167.20 -0.95 -2.21 16 11 C 0.11 -0.64 4.45 45.52 0.20 -0.44 16 12 H 0.13 -1.34 8.02 -2.39 -0.02 -1.36 16 13 C -0.15 0.70 7.50 31.12 0.23 0.93 16 14 C 0.11 -0.70 4.89 45.52 0.22 -0.48 16 15 H 0.12 -1.17 8.14 -2.38 -0.02 -1.19 16 16 N -0.36 -0.13 2.42 -324.98 -0.79 -0.92 16 17 C 0.06 -0.11 11.02 83.54 0.92 0.81 16 18 C -0.29 -0.37 10.80 21.99 0.24 -0.13 16 19 C 0.02 0.12 12.03 85.24 1.03 1.14 16 20 N -0.33 -2.31 10.86 -57.02 -0.62 -2.93 16 21 C -0.13 1.55 7.54 31.12 0.23 1.78 16 22 C -0.09 0.32 10.70 66.72 0.71 1.03 16 23 S 0.21 -1.14 20.58 -56.49 -1.16 -2.30 16 24 H 0.40 -4.36 8.70 -74.06 -0.64 -5.00 16 25 H 0.12 -0.04 7.96 -2.39 -0.02 -0.05 16 26 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 27 H -0.26 0.08 7.11 99.48 0.71 0.79 16 28 H 0.14 0.64 7.96 -2.91 -0.02 0.61 16 29 H 0.42 1.51 6.63 -96.76 -0.64 0.86 16 30 H 0.07 0.21 7.51 -2.39 -0.02 0.19 16 31 H 0.14 -1.50 8.14 -2.39 -0.02 -1.52 16 32 H 0.20 -1.93 8.06 -2.91 -0.02 -1.95 16 33 H 0.16 -0.33 8.06 -2.91 -0.02 -0.35 16 34 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.15 -2.83 8.14 -2.39 -0.02 -2.85 16 36 H 0.09 -0.98 7.82 -2.39 -0.02 -1.00 16 37 H 0.21 -1.85 8.00 -2.91 -0.02 -1.88 16 Total: 0.00 -28.91 342.59 -3.77 -32.68 By element: Atomic # 1 Polarization: -14.23 SS G_CDS: -0.12 Total: -14.36 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.47 Total: 4.77 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -2.36 Total: -6.06 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -6.40 Total: -30.11 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.12 Total: -1.17 kcal Atomic # 16 Polarization: 15.74 SS G_CDS: -1.49 Total: 14.25 kcal Total: -28.91 -3.77 -32.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567564_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.085 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds