Wall clock time and date at job start Tue Mar 9 2021 13:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 C 1.52993 * 109.47178 * 239.99684 * 2 1 3 5 5 O 1.45200 * 109.46504 * 119.99825 * 2 1 3 6 6 C 1.34227 * 117.00428 * 60.00655 * 5 2 1 7 7 O 1.20827 * 119.99618 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00117 * 179.97438 * 6 5 2 9 9 H 1.08997 * 109.47519 * 299.99541 * 8 6 5 10 10 C 1.53001 * 109.47142 * 59.99711 * 8 6 5 11 11 C 1.53002 * 109.46835 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47191 * 299.99752 * 11 10 8 13 13 H 1.08996 * 109.47427 * 300.00145 * 12 11 10 14 14 N 1.46498 * 109.46816 * 180.02562 * 12 11 10 15 15 S 1.65604 * 119.99701 * 95.00643 * 14 12 11 16 16 O 1.42099 * 106.40076 * 311.45436 * 15 14 12 17 17 O 1.42103 * 106.40351 * 178.53933 * 15 14 12 18 18 C 1.76201 * 107.22127 * 64.99785 * 15 14 12 19 19 C 1.33384 * 122.53780 * 90.02389 * 18 15 14 20 20 S 1.75884 * 109.59055 * 180.02562 * 19 18 15 21 21 C 1.75883 * 90.97051 * 0.02562 * 20 19 18 22 22 C 1.50707 * 125.20144 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.46442 * 245.02216 * 22 21 20 24 24 Si 1.86293 * 109.47256 * 5.01782 * 22 21 20 25 25 C 1.33383 * 109.59575 * 0.22864 * 21 20 19 26 26 C 1.53001 * 109.47028 * 60.00366 * 12 11 10 27 27 C 1.53002 * 109.46835 * 299.99852 * 26 12 11 28 28 H 1.08996 * 109.47365 * 300.00193 * 1 2 3 29 29 H 1.09006 * 109.46689 * 60.00418 * 1 2 3 30 30 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47197 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47091 * 299.99907 * 3 2 1 33 33 H 1.09005 * 109.47250 * 59.99598 * 3 2 1 34 34 H 1.08998 * 109.47441 * 299.99956 * 4 2 1 35 35 H 1.09005 * 109.46872 * 60.00340 * 4 2 1 36 36 H 1.08996 * 109.46960 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.47265 * 300.00146 * 10 8 6 38 38 H 1.09005 * 109.46994 * 60.00177 * 10 8 6 39 39 H 1.09006 * 109.47116 * 180.02562 * 11 10 8 40 40 H 1.08996 * 109.47053 * 60.00125 * 11 10 8 41 41 H 0.96998 * 120.00504 * 275.00352 * 14 12 11 42 42 H 1.07999 * 125.20678 * 359.97438 * 19 18 15 43 43 H 1.08999 * 109.47345 * 125.02286 * 22 21 20 44 44 H 0.96700 * 114.00311 * 60.00230 * 23 22 21 45 45 H 1.48501 * 109.99918 * 58.68485 * 24 22 21 46 46 H 1.48506 * 109.99973 * 180.02562 * 24 22 21 47 47 H 1.08001 * 122.54157 * 179.75908 * 25 21 20 48 48 H 1.09005 * 109.46994 * 59.99540 * 26 12 11 49 49 H 1.08993 * 109.47265 * 179.97438 * 26 12 11 50 50 H 1.09004 * 109.46638 * 180.02562 * 27 26 12 51 51 H 1.08996 * 109.47053 * 299.99874 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1181 -2.7436 2.5437 9 1 3.2076 -2.7726 2.5593 10 6 1.6079 -2.0630 3.8154 11 6 2.0793 -2.8505 5.0396 12 6 1.5316 -4.2775 4.9700 13 1 0.4422 -4.2482 4.9543 14 7 1.9825 -5.0312 6.1424 15 16 1.0097 -5.1454 7.4777 16 8 0.5716 -3.8254 7.7690 17 8 1.7060 -5.9572 8.4133 18 6 -0.4243 -6.0522 7.0024 19 6 -0.4980 -7.3805 7.0992 20 16 -2.0716 -7.9266 6.5344 21 6 -2.5548 -6.2714 6.1877 22 6 -3.8896 -5.8559 5.6245 23 8 -3.7027 -5.2875 4.3267 24 14 -5.0003 -7.3460 5.4957 25 6 -1.5574 -5.4406 6.4942 26 6 2.0419 -4.9581 3.6983 27 6 1.5704 -4.1706 2.4741 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2493 37 1 1.9976 -1.0463 3.8648 38 1 0.5183 -2.0341 3.7999 39 1 1.7154 -2.3658 5.9456 40 1 3.1687 -2.8798 5.0553 41 1 2.8509 -5.4635 6.1367 42 1 0.2886 -8.0225 7.4672 43 1 -4.3474 -5.1171 6.2822 44 1 -3.2986 -5.8904 3.6877 45 1 -5.1767 -7.9651 6.8339 46 1 -6.3196 -6.9496 4.9410 47 1 -1.6295 -4.3715 6.3592 48 1 3.1314 -4.9873 3.7140 49 1 1.6521 -5.9748 3.6489 50 1 1.9336 -4.6558 1.5681 51 1 0.4810 -4.1413 2.4584 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17607846_15065232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:40 Heat of formation + Delta-G solvation = -167.624238 kcal Electronic energy + Delta-G solvation = -35584.753136 eV Core-core repulsion = 30897.173273 eV Total energy + Delta-G solvation = -4687.579863 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.97530 -39.97623 -39.52712 -38.22987 -37.87289 -37.60476 -36.85047 -35.54327 -34.83465 -31.94992 -31.87752 -30.46376 -28.34868 -28.33843 -27.28133 -25.20467 -24.97963 -23.89684 -22.59945 -21.50357 -21.25461 -20.46090 -20.08991 -19.25442 -18.53287 -18.17977 -17.97181 -17.78719 -17.51028 -17.27760 -16.95129 -16.40953 -16.07794 -15.64668 -15.47812 -15.41425 -15.35947 -14.98089 -14.89176 -14.66436 -14.41081 -14.31446 -14.18341 -13.99769 -13.95757 -13.53715 -13.46130 -13.31791 -13.16016 -13.12644 -13.02866 -12.93352 -12.89983 -12.85684 -12.62992 -12.50914 -12.44649 -12.29693 -12.28401 -12.24987 -12.00879 -11.83226 -11.64494 -11.46484 -11.31814 -10.79539 -10.73983 -10.58270 -10.24696 -9.91706 -5.29980 -0.77462 -0.51446 0.25864 0.52265 0.95656 1.08224 1.28592 1.46784 1.69768 1.78645 2.01445 2.70640 3.17567 3.31698 3.42696 3.45266 3.51392 3.58824 3.74431 3.77142 3.77696 3.83496 3.94685 3.96988 4.02656 4.05752 4.17131 4.20917 4.29445 4.31196 4.35056 4.54631 4.57736 4.59809 4.65063 4.67190 4.75709 4.77498 4.84258 4.87994 4.88630 4.92158 4.95637 5.00884 5.01979 5.07742 5.10401 5.19694 5.27939 5.29423 5.32109 5.63523 5.83330 6.34859 6.90140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.468 3.532 7 O -0.501 6.501 8 C -0.084 4.084 9 H 0.110 0.890 10 C -0.110 4.110 11 C -0.138 4.138 12 C 0.151 3.849 13 H 0.088 0.912 14 N -1.110 6.110 15 S 2.708 3.292 16 O -0.946 6.946 17 O -0.956 6.956 18 C -0.688 4.688 19 C -0.081 4.081 20 S 0.158 5.842 21 C -0.228 4.228 22 C -0.027 4.027 23 O -0.531 6.531 24 Si 0.656 3.344 25 C -0.046 4.046 26 C -0.123 4.123 27 C -0.102 4.102 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.420 0.580 42 H 0.186 0.814 43 H 0.127 0.873 44 H 0.381 0.619 45 H -0.238 1.238 46 H -0.231 1.231 47 H 0.156 0.844 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -2.484 -4.078 5.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.311 3.689 7 O -0.389 6.389 8 C -0.103 4.103 9 H 0.128 0.872 10 C -0.148 4.148 11 C -0.177 4.177 12 C 0.044 3.956 13 H 0.106 0.894 14 N -0.870 5.870 15 S 2.794 3.206 16 O -0.936 6.936 17 O -0.947 6.947 18 C -0.788 4.788 19 C -0.220 4.220 20 S 0.422 5.578 21 C -0.345 4.345 22 C -0.140 4.140 23 O -0.337 6.337 24 Si 0.555 3.445 25 C -0.075 4.075 26 C -0.162 4.162 27 C -0.140 4.140 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.255 0.745 42 H 0.203 0.797 43 H 0.144 0.856 44 H 0.228 0.772 45 H -0.162 1.162 46 H -0.154 1.154 47 H 0.174 0.826 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.359 -3.475 -3.125 4.687 hybrid contribution 0.811 1.208 -0.149 1.463 sum 0.452 -2.267 -3.274 4.007 Atomic orbital electron populations 1.22497 0.93883 1.04741 1.02952 1.22215 0.94476 0.92337 0.82881 1.21867 1.02286 0.92504 1.03265 1.22494 1.01697 1.03104 0.96764 1.86550 1.69660 1.25305 1.45165 1.23599 0.77347 0.80715 0.87244 1.90591 1.35033 1.69963 1.43296 1.21204 1.03116 0.94751 0.91219 0.87203 1.21514 1.01855 0.99822 0.91595 1.22105 1.02121 0.94508 0.98970 1.20901 0.99179 0.90932 0.84549 0.89366 1.55638 1.31591 1.66959 1.32777 1.01682 0.72757 0.73847 0.72312 1.93612 1.82155 1.35702 1.82144 1.93616 1.72185 1.70460 1.58395 1.30057 1.21550 1.06065 1.21101 1.25904 1.01232 0.97138 0.97766 1.84361 1.07963 1.07150 1.58320 1.25064 1.02212 0.96000 1.11254 1.24456 0.95726 1.07263 0.86602 1.86555 1.84611 1.43328 1.19188 0.95149 0.82939 0.80532 0.85884 1.19625 0.90147 1.01473 0.96206 1.21851 1.02057 0.99589 0.92727 1.21418 1.02166 0.92131 0.98309 0.91902 0.90940 0.89807 0.91413 0.90227 0.91364 0.89832 0.90913 0.91982 0.89775 0.90873 0.89436 0.90581 0.74470 0.79697 0.85610 0.77192 1.16221 1.15391 0.82606 0.90606 0.90313 0.90231 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.14 8.37 37.16 0.31 0.17 16 2 C 0.12 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.13 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.12 8.37 37.15 0.31 0.20 16 5 O -0.35 -0.49 9.79 -39.25 -0.38 -0.87 16 6 C 0.47 0.50 6.57 36.00 0.24 0.74 16 7 O -0.50 -1.55 11.48 -18.75 -0.22 -1.76 16 8 C -0.08 0.14 2.63 -91.77 -0.24 -0.10 16 9 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 10 C -0.11 0.20 5.14 -26.73 -0.14 0.07 16 11 C -0.14 0.28 5.53 -26.73 -0.15 0.14 16 12 C 0.15 -0.41 2.65 -67.93 -0.18 -0.59 16 13 H 0.09 -0.24 7.37 -51.93 -0.38 -0.63 16 14 N -1.11 2.86 5.47 -4.89 -0.03 2.83 16 15 S 2.71 1.63 5.71 -107.50 -0.61 1.01 16 16 O -0.95 -3.36 16.90 -57.17 -0.97 -4.32 16 17 O -0.96 -3.22 17.64 -57.17 -1.01 -4.23 16 18 C -0.69 0.08 5.72 -41.21 -0.24 -0.16 16 19 C -0.08 0.09 10.70 29.04 0.31 0.40 16 20 S 0.16 -0.25 20.60 -107.50 -2.21 -2.47 16 21 C -0.23 0.13 5.70 -36.00 -0.21 -0.07 16 22 C -0.03 0.03 2.96 36.01 0.11 0.13 16 23 O -0.53 0.44 12.88 -35.23 -0.45 -0.01 16 24 Si 0.66 -1.03 30.98 -169.99 -5.27 -6.30 16 25 C -0.05 -0.01 9.12 -41.21 -0.38 -0.38 16 26 C -0.12 0.47 5.45 -26.73 -0.15 0.32 16 27 C -0.10 0.24 4.49 -26.73 -0.12 0.12 16 28 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.08 0.20 5.89 -51.93 -0.31 -0.10 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.08 0.19 5.89 -51.93 -0.31 -0.12 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.08 -0.14 8.11 -51.93 -0.42 -0.56 16 38 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 39 H 0.09 -0.05 7.64 -51.93 -0.40 -0.45 16 40 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 41 H 0.42 -1.88 8.84 -34.47 -0.30 -2.18 16 42 H 0.19 -0.56 8.00 -52.49 -0.42 -0.98 16 43 H 0.13 -0.09 7.96 -51.93 -0.41 -0.50 16 44 H 0.38 -1.77 8.70 45.56 0.40 -1.37 16 45 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 46 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 47 H 0.16 -0.01 7.97 -52.49 -0.42 -0.42 16 48 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 49 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 50 H 0.08 -0.15 8.10 -51.93 -0.42 -0.57 16 51 H 0.08 -0.12 8.10 -51.93 -0.42 -0.55 16 LS Contribution 429.31 15.07 6.47 6.47 Total: 0.00 -9.91 429.31 -13.05 -22.96 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: -8.08 Total: -14.73 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.29 Total: 1.42 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -0.03 Total: 2.83 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -3.03 Total: -11.20 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.27 Total: -6.30 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.83 Total: -1.45 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -9.91 -13.05 -22.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_15065232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.668 kcal (2) G-P(sol) polarization free energy of solvation -9.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds