Wall clock time and date at job start Tue Mar 9 2021 13:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 C 1.52993 * 109.47178 * 239.99684 * 2 1 3 5 5 O 1.45200 * 109.46504 * 119.99825 * 2 1 3 6 6 C 1.34227 * 117.00428 * 60.00655 * 5 2 1 7 7 O 1.20827 * 119.99618 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00117 * 179.97438 * 6 5 2 9 9 H 1.08997 * 109.47519 * 299.99541 * 8 6 5 10 10 C 1.53001 * 109.47142 * 59.99711 * 8 6 5 11 11 C 1.53002 * 109.46835 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47191 * 299.99752 * 11 10 8 13 13 H 1.08996 * 109.47427 * 300.00145 * 12 11 10 14 14 N 1.46498 * 109.46816 * 180.02562 * 12 11 10 15 15 S 1.65604 * 119.99701 * 95.00643 * 14 12 11 16 16 O 1.42099 * 106.40076 * 311.45436 * 15 14 12 17 17 O 1.42103 * 106.40351 * 178.53933 * 15 14 12 18 18 C 1.76201 * 107.22127 * 64.99785 * 15 14 12 19 19 C 1.33384 * 122.53780 * 90.02389 * 18 15 14 20 20 S 1.75884 * 109.59055 * 180.02562 * 19 18 15 21 21 C 1.75883 * 90.97051 * 0.02562 * 20 19 18 22 22 C 1.50707 * 125.20144 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.46442 * 245.02216 * 22 21 20 24 24 Si 1.86293 * 109.47256 * 5.01782 * 22 21 20 25 25 C 1.33383 * 109.59575 * 0.22864 * 21 20 19 26 26 C 1.53001 * 109.47028 * 60.00366 * 12 11 10 27 27 C 1.53002 * 109.46835 * 299.99852 * 26 12 11 28 28 H 1.08996 * 109.47365 * 300.00193 * 1 2 3 29 29 H 1.09006 * 109.46689 * 60.00418 * 1 2 3 30 30 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47197 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47091 * 299.99907 * 3 2 1 33 33 H 1.09005 * 109.47250 * 59.99598 * 3 2 1 34 34 H 1.08998 * 109.47441 * 299.99956 * 4 2 1 35 35 H 1.09005 * 109.46872 * 60.00340 * 4 2 1 36 36 H 1.08996 * 109.46960 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.47265 * 300.00146 * 10 8 6 38 38 H 1.09005 * 109.46994 * 60.00177 * 10 8 6 39 39 H 1.09006 * 109.47116 * 180.02562 * 11 10 8 40 40 H 1.08996 * 109.47053 * 60.00125 * 11 10 8 41 41 H 0.96998 * 120.00504 * 275.00352 * 14 12 11 42 42 H 1.07999 * 125.20678 * 359.97438 * 19 18 15 43 43 H 1.08999 * 109.47345 * 125.02286 * 22 21 20 44 44 H 0.96700 * 114.00311 * 60.00230 * 23 22 21 45 45 H 1.48501 * 109.99918 * 58.68485 * 24 22 21 46 46 H 1.48506 * 109.99973 * 180.02562 * 24 22 21 47 47 H 1.08001 * 122.54157 * 179.75908 * 25 21 20 48 48 H 1.09005 * 109.46994 * 59.99540 * 26 12 11 49 49 H 1.08993 * 109.47265 * 179.97438 * 26 12 11 50 50 H 1.09004 * 109.46638 * 180.02562 * 27 26 12 51 51 H 1.08996 * 109.47053 * 299.99874 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1181 -2.7436 2.5437 9 1 3.2076 -2.7726 2.5593 10 6 1.6079 -2.0630 3.8154 11 6 2.0793 -2.8505 5.0396 12 6 1.5316 -4.2775 4.9700 13 1 0.4422 -4.2482 4.9543 14 7 1.9825 -5.0312 6.1424 15 16 1.0097 -5.1454 7.4777 16 8 0.5716 -3.8254 7.7690 17 8 1.7060 -5.9572 8.4133 18 6 -0.4243 -6.0522 7.0024 19 6 -0.4980 -7.3805 7.0992 20 16 -2.0716 -7.9266 6.5344 21 6 -2.5548 -6.2714 6.1877 22 6 -3.8896 -5.8559 5.6245 23 8 -3.7027 -5.2875 4.3267 24 14 -5.0003 -7.3460 5.4957 25 6 -1.5574 -5.4406 6.4942 26 6 2.0419 -4.9581 3.6983 27 6 1.5704 -4.1706 2.4741 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2493 37 1 1.9976 -1.0463 3.8648 38 1 0.5183 -2.0341 3.7999 39 1 1.7154 -2.3658 5.9456 40 1 3.1687 -2.8798 5.0553 41 1 2.8509 -5.4635 6.1367 42 1 0.2886 -8.0225 7.4672 43 1 -4.3474 -5.1171 6.2822 44 1 -3.2986 -5.8904 3.6877 45 1 -5.1767 -7.9651 6.8339 46 1 -6.3196 -6.9496 4.9410 47 1 -1.6295 -4.3715 6.3592 48 1 3.1314 -4.9873 3.7140 49 1 1.6521 -5.9748 3.6489 50 1 1.9336 -4.6558 1.5681 51 1 0.4810 -4.1413 2.4584 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17607846_15065232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:39 Heat of formation + Delta-G solvation = -167.793746 kcal Electronic energy + Delta-G solvation = -35584.760487 eV Core-core repulsion = 30897.173273 eV Total energy + Delta-G solvation = -4687.587213 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02000 -39.86094 -39.46448 -38.37278 -37.93696 -37.53374 -37.00929 -35.49853 -34.82832 -31.82844 -31.75624 -30.34852 -28.40183 -28.32188 -27.21667 -25.15496 -24.93929 -23.72094 -22.53825 -21.44801 -21.13684 -20.49780 -20.06783 -19.18108 -18.54672 -18.18985 -17.92306 -17.73073 -17.53893 -17.23833 -16.99307 -16.35798 -16.10038 -15.59201 -15.46955 -15.38409 -15.22937 -14.93617 -14.84608 -14.66754 -14.33219 -14.27108 -14.12392 -13.96358 -13.86143 -13.52649 -13.40749 -13.32787 -13.23342 -13.14593 -13.11874 -12.94362 -12.93311 -12.87547 -12.56901 -12.54173 -12.42970 -12.25979 -12.21837 -12.08682 -11.96704 -11.74009 -11.53611 -11.39144 -11.32375 -10.84979 -10.66849 -10.44113 -10.17539 -9.82738 -5.21480 -0.77598 -0.46185 0.34100 0.58814 0.97890 1.15796 1.22422 1.52556 1.71325 1.83362 2.06260 2.68716 3.21048 3.42047 3.50395 3.62260 3.64269 3.67748 3.72770 3.77526 3.90864 3.93653 3.96409 4.11622 4.14775 4.21720 4.26926 4.37028 4.38937 4.44639 4.53506 4.56418 4.57467 4.64183 4.73744 4.79445 4.84148 4.85319 4.85670 4.90187 4.91376 5.03828 5.08175 5.10481 5.16438 5.20737 5.22798 5.24179 5.27221 5.36448 5.46821 5.60825 6.10218 6.63900 6.83668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.464 3.536 7 O -0.525 6.525 8 C -0.080 4.080 9 H 0.128 0.872 10 C -0.105 4.105 11 C -0.137 4.137 12 C 0.148 3.852 13 H 0.087 0.913 14 N -1.096 6.096 15 S 2.723 3.277 16 O -0.982 6.982 17 O -0.986 6.986 18 C -0.695 4.695 19 C -0.083 4.083 20 S 0.190 5.810 21 C -0.235 4.235 22 C -0.032 4.032 23 O -0.546 6.546 24 Si 0.733 3.267 25 C -0.058 4.058 26 C -0.115 4.115 27 C -0.098 4.098 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.431 0.569 42 H 0.204 0.796 43 H 0.120 0.880 44 H 0.397 0.603 45 H -0.265 1.265 46 H -0.270 1.270 47 H 0.150 0.850 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -3.323 -4.613 6.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.308 3.692 7 O -0.414 6.414 8 C -0.098 4.098 9 H 0.146 0.854 10 C -0.143 4.143 11 C -0.176 4.176 12 C 0.042 3.958 13 H 0.105 0.895 14 N -0.858 5.858 15 S 2.812 3.188 16 O -0.971 6.971 17 O -0.976 6.976 18 C -0.796 4.796 19 C -0.222 4.222 20 S 0.454 5.546 21 C -0.353 4.353 22 C -0.145 4.145 23 O -0.354 6.354 24 Si 0.635 3.365 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.137 4.137 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.269 0.731 42 H 0.221 0.779 43 H 0.137 0.863 44 H 0.247 0.753 45 H -0.191 1.191 46 H -0.196 1.196 47 H 0.168 0.832 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.095 0.905 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.628 -4.307 -3.659 5.686 hybrid contribution 0.455 1.480 -0.030 1.549 sum 1.083 -2.827 -3.690 4.772 Atomic orbital electron populations 1.22463 0.94186 1.03629 1.03518 1.22390 0.94382 0.93237 0.82763 1.21878 1.02419 0.91396 1.03940 1.22454 1.01814 1.02138 0.97301 1.86557 1.69704 1.25574 1.45508 1.24161 0.76782 0.80609 0.87639 1.90584 1.36110 1.70344 1.44360 1.21294 1.04087 0.94627 0.89831 0.85437 1.21451 1.01323 0.99848 0.91689 1.22090 1.02947 0.94657 0.97942 1.20982 0.99307 0.90696 0.84859 0.89540 1.55298 1.31690 1.66927 1.31881 1.00892 0.72666 0.72872 0.72418 1.93569 1.82805 1.37615 1.83154 1.93571 1.72989 1.70884 1.60135 1.29838 1.21114 1.06434 1.22183 1.26225 1.02022 0.97025 0.96971 1.84245 1.07183 1.05721 1.57455 1.25164 1.02116 0.96850 1.11135 1.24560 0.95814 1.07488 0.86631 1.86520 1.84876 1.44430 1.19550 0.94276 0.80261 0.78736 0.83177 1.19660 0.90655 1.01473 0.96880 1.21809 1.02995 0.99600 0.90971 1.21382 1.01536 0.91831 0.98906 0.91932 0.89768 0.91691 0.91176 0.88898 0.91363 0.91658 0.89778 0.91685 0.89940 0.91750 0.91093 0.89204 0.73078 0.77856 0.86327 0.75308 1.19068 1.19564 0.83216 0.89049 0.89179 0.90478 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 2 C 0.11 0.20 1.13 -10.79 -0.01 0.18 16 3 C -0.14 0.29 8.85 71.98 0.64 0.93 16 4 C -0.18 -0.29 8.37 71.98 0.60 0.31 16 5 O -0.36 -1.21 9.79 -51.39 -0.50 -1.71 16 6 C 0.46 1.37 6.57 71.23 0.47 1.84 16 7 O -0.52 -3.93 11.48 21.96 0.25 -3.68 16 8 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 9 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 10 C -0.10 0.33 5.14 30.60 0.16 0.49 16 11 C -0.14 0.54 5.53 30.60 0.17 0.71 16 12 C 0.15 -0.83 2.65 44.99 0.12 -0.71 16 13 H 0.09 -0.43 7.37 -2.39 -0.02 -0.45 16 14 N -1.10 5.94 5.47 -169.39 -0.93 5.01 16 15 S 2.72 4.96 5.71 -56.49 -0.32 4.63 16 16 O -0.98 -8.41 16.90 -128.00 -2.16 -10.57 16 17 O -0.99 -7.03 17.64 -128.00 -2.26 -9.29 16 18 C -0.69 0.04 5.72 21.22 0.12 0.16 16 19 C -0.08 0.25 10.70 66.72 0.71 0.96 16 20 S 0.19 -0.77 20.60 -56.49 -1.16 -1.93 16 21 C -0.23 0.26 5.70 24.59 0.14 0.40 16 22 C -0.03 0.05 2.96 71.24 0.21 0.26 16 23 O -0.55 0.72 12.88 -148.98 -1.92 -1.20 16 24 Si 0.73 -2.18 30.98 68.60 2.13 -0.05 16 25 C -0.06 -0.05 9.12 21.22 0.19 0.14 16 26 C -0.11 1.00 5.45 30.60 0.17 1.17 16 27 C -0.10 0.48 4.49 30.60 0.14 0.61 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.06 0.37 5.89 -2.39 -0.01 0.36 16 35 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.08 -0.23 8.11 -2.39 -0.02 -0.25 16 38 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 39 H 0.07 0.00 7.64 -2.38 -0.02 -0.02 16 40 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.43 -4.26 8.84 -96.75 -0.85 -5.12 16 42 H 0.20 -1.48 8.00 -2.91 -0.02 -1.51 16 43 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 44 H 0.40 -3.76 8.70 -74.06 -0.64 -4.40 16 45 H -0.26 -0.37 7.11 99.48 0.71 0.33 16 46 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 47 H 0.15 0.23 7.97 -2.91 -0.02 0.21 16 48 H 0.09 -1.03 8.14 -2.38 -0.02 -1.05 16 49 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 50 H 0.08 -0.30 8.10 -2.38 -0.02 -0.32 16 51 H 0.07 -0.17 8.10 -2.39 -0.02 -0.19 16 Total: 0.00 -23.62 429.31 -2.99 -26.61 By element: Atomic # 1 Polarization: -15.17 SS G_CDS: -0.51 Total: -15.68 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 4.40 Total: 7.87 kcal Atomic # 7 Polarization: 5.94 SS G_CDS: -0.93 Total: 5.01 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -6.59 Total: -26.46 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.13 Total: -0.05 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.49 Total: 2.70 kcal Total: -23.62 -2.99 -26.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17607846_15065232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.182 kcal (2) G-P(sol) polarization free energy of solvation -23.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds