Wall clock time and date at job start Tue Mar 9 2021 13:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42104 * 108.57659 * 2 1 4 4 O 1.42097 * 108.57977 * 228.97483 * 2 1 3 5 5 C 1.81401 * 101.91940 * 114.48572 * 2 1 3 6 6 H 1.09002 * 112.85014 * 55.33657 * 5 2 1 7 7 C 1.53781 * 113.61581 * 186.53161 * 5 2 1 8 8 C 1.53777 * 87.08336 * 140.06322 * 7 5 2 9 9 H 1.08996 * 113.61474 * 220.01758 * 8 7 5 10 10 C 1.53002 * 113.61002 * 89.11664 * 8 7 5 11 11 N 1.46502 * 109.46845 * 174.99937 * 10 8 7 12 12 S 1.65597 * 119.99956 * 165.00272 * 11 10 8 13 13 O 1.42097 * 106.40358 * 178.54144 * 12 11 10 14 14 O 1.42108 * 106.40158 * 311.45901 * 12 11 10 15 15 C 1.76196 * 107.22167 * 64.99690 * 12 11 10 16 16 C 1.33392 * 122.53575 * 90.02391 * 15 12 11 17 17 S 1.75886 * 109.59035 * 180.02562 * 16 15 12 18 18 C 1.75885 * 90.97441 * 0.02562 * 17 16 15 19 19 C 1.50697 * 125.20564 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46864 * 120.02602 * 19 18 17 21 21 Si 1.86299 * 109.46901 * 0.02778 * 19 18 17 22 22 C 1.33394 * 109.58824 * 359.72997 * 18 17 16 23 23 C 1.53775 * 87.07992 * 334.56762 * 8 7 5 24 24 H 1.08996 * 109.47188 * 305.51365 * 1 2 3 25 25 H 1.08999 * 109.46989 * 65.51428 * 1 2 3 26 26 H 1.09000 * 109.46814 * 185.51207 * 1 2 3 27 27 H 1.08997 * 113.61673 * 254.61871 * 7 5 2 28 28 H 1.09005 * 113.61396 * 25.51699 * 7 5 2 29 29 H 1.08997 * 109.47421 * 294.99809 * 10 8 7 30 30 H 1.09002 * 109.47366 * 55.00252 * 10 8 7 31 31 H 0.97003 * 120.00236 * 344.99887 * 11 10 8 32 32 H 1.07990 * 125.20375 * 0.02848 * 16 15 12 33 33 H 1.08993 * 109.47144 * 240.02479 * 19 18 17 34 34 H 0.96701 * 113.99907 * 299.99871 * 20 19 18 35 35 H 1.48510 * 109.99601 * 179.97438 * 21 19 18 36 36 H 1.48495 * 110.00111 * 301.31267 * 21 19 18 37 37 H 1.08000 * 122.53543 * 180.23813 * 22 18 17 38 38 H 1.08993 * 113.61636 * 270.87622 * 23 8 7 39 39 H 1.09008 * 113.61006 * 139.97865 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.7172 -1.7081 1.7571 7 6 3.6857 -0.7198 1.9671 8 6 3.2641 -0.3653 3.4029 9 1 3.9069 0.3770 3.8760 10 6 3.0148 -1.5882 4.2879 11 7 2.7370 -1.1507 5.6583 12 16 2.0713 -2.2072 6.7458 13 8 1.9597 -1.5015 7.9741 14 8 0.9627 -2.8101 6.0924 15 6 3.2485 -3.4903 7.0143 16 6 4.1762 -3.4243 7.9705 17 16 5.1649 -4.8785 7.9345 18 6 4.2359 -5.5128 6.5825 19 6 4.4806 -6.8366 5.9052 20 8 3.3123 -7.6518 6.0167 21 14 5.9177 -7.6957 6.7221 22 6 3.2781 -4.6452 6.2518 23 6 1.9816 0.2276 2.7959 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 4.1649 -1.6949 1.8809 28 1 4.2433 0.0726 1.4676 29 1 2.1605 -2.1462 3.9045 30 1 3.8981 -2.2269 4.2824 31 1 2.9432 -0.2422 5.9286 32 1 4.3011 -2.6035 8.6611 33 1 4.7079 -6.6695 4.8524 34 1 3.0507 -7.8417 6.9281 35 1 6.1689 -9.0029 6.0636 36 1 7.1314 -6.8441 6.6408 37 1 2.5808 -4.8284 5.4476 38 1 2.0731 1.2789 2.5231 39 1 1.0849 0.0172 3.3790 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17836388_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:08 Heat of formation + Delta-G solvation = -101.977246 kcal Electronic energy + Delta-G solvation = -26924.618150 eV Core-core repulsion = 22795.650058 eV Total energy + Delta-G solvation = -4128.968092 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.035 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69635 -39.59704 -38.31682 -37.98420 -37.63605 -37.03328 -36.94328 -35.86938 -31.92635 -30.70342 -28.93840 -27.33857 -27.09850 -25.35193 -24.98826 -21.51865 -20.96385 -20.13816 -19.81983 -19.32620 -18.62664 -18.40639 -17.95391 -17.72113 -17.29038 -17.11617 -17.02038 -16.45378 -16.19795 -15.75558 -15.60726 -15.45956 -15.03135 -14.51387 -14.39639 -14.26835 -14.25007 -14.20442 -14.02269 -13.91107 -13.85705 -13.35611 -13.22471 -13.12020 -13.07981 -12.99326 -12.96965 -12.82429 -12.57997 -12.29268 -12.08827 -11.91406 -11.83867 -11.70008 -11.15945 -10.86939 -10.72175 -10.28151 -9.97573 -5.31517 -1.05744 -0.85316 -0.57834 0.20818 0.47816 0.87573 1.06339 1.42031 1.64504 1.74542 1.92210 2.45008 2.61860 2.72818 3.02874 3.09114 3.18313 3.23089 3.26571 3.35115 3.53353 3.72608 3.76990 3.82616 3.94202 4.05826 4.09022 4.17159 4.24722 4.27530 4.33299 4.44506 4.53319 4.60457 4.63571 4.66594 4.77295 4.79567 4.95768 4.97029 5.71386 6.33075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.423 3.577 3 O -0.936 6.936 4 O -0.939 6.939 5 C -0.612 4.612 6 H 0.155 0.845 7 C -0.100 4.100 8 C -0.106 4.106 9 H 0.099 0.901 10 C 0.130 3.870 11 N -1.115 6.115 12 S 2.710 3.290 13 O -0.953 6.953 14 O -0.948 6.948 15 C -0.689 4.689 16 C -0.082 4.082 17 S 0.161 5.839 18 C -0.228 4.228 19 C -0.027 4.027 20 O -0.532 6.532 21 Si 0.654 3.346 22 C -0.046 4.046 23 C -0.114 4.114 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.422 0.578 32 H 0.186 0.814 33 H 0.126 0.874 34 H 0.382 0.618 35 H -0.230 1.230 36 H -0.237 1.237 37 H 0.157 0.843 38 H 0.109 0.891 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -0.882 3.622 4.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.933 6.933 4 O -0.936 6.936 5 C -0.720 4.720 6 H 0.173 0.827 7 C -0.139 4.139 8 C -0.127 4.127 9 H 0.117 0.883 10 C 0.004 3.996 11 N -0.876 5.876 12 S 2.797 3.203 13 O -0.944 6.944 14 O -0.938 6.938 15 C -0.789 4.789 16 C -0.221 4.221 17 S 0.424 5.576 18 C -0.346 4.346 19 C -0.140 4.140 20 O -0.338 6.338 21 Si 0.553 3.447 22 C -0.075 4.075 23 C -0.152 4.152 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.257 0.743 32 H 0.203 0.797 33 H 0.143 0.857 34 H 0.230 0.770 35 H -0.153 1.153 36 H -0.161 1.161 37 H 0.175 0.825 38 H 0.127 0.873 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.662 -1.603 3.361 5.222 hybrid contribution -1.297 0.552 -0.561 1.517 sum 2.364 -1.052 2.800 3.812 Atomic orbital electron populations 1.30227 1.26520 1.11753 1.11903 1.07800 0.78525 0.75862 0.77252 1.93610 1.79238 1.34152 1.86311 1.93611 1.79139 1.67015 1.53863 1.31805 1.07652 1.12485 1.20103 0.82682 1.22640 0.90803 1.04476 0.95950 1.22390 0.98056 0.97537 0.94742 0.88288 1.21188 1.02003 0.96292 0.80103 1.55527 1.83330 1.26274 1.22451 1.01573 0.73284 0.72745 0.72725 1.93624 1.85708 1.72078 1.42951 1.93609 1.47145 1.77488 1.75553 1.30031 1.21093 1.18952 1.08792 1.25923 0.95315 1.02073 0.98810 1.84431 1.32208 1.12014 1.28898 1.25100 1.03099 1.03142 1.03284 1.24446 0.97861 0.88007 1.03702 1.86544 1.44952 1.69480 1.32794 0.95007 0.77156 0.82559 0.89970 1.19615 0.97946 0.90326 0.99582 1.22855 0.99916 0.98439 0.93967 0.85188 0.85224 0.85238 0.88907 0.87941 0.89534 0.90808 0.74295 0.79663 0.85680 0.77000 1.15307 1.16112 0.82541 0.87301 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.53 10.62 101.05 1.07 3.60 16 2 S 2.42 -3.39 5.29 -107.50 -0.57 -3.96 16 3 O -0.94 -1.92 17.40 -57.83 -1.01 -2.92 16 4 O -0.94 -2.76 18.10 -57.83 -1.05 -3.81 16 5 C -0.61 2.33 3.81 -25.92 -0.10 2.23 16 6 H 0.16 -0.91 7.72 -51.93 -0.40 -1.31 16 7 C -0.10 0.35 7.26 -25.92 -0.19 0.16 16 8 C -0.11 0.45 3.98 -89.81 -0.36 0.09 16 9 H 0.10 -0.50 8.12 -51.93 -0.42 -0.92 16 10 C 0.13 -0.50 5.90 -4.04 -0.02 -0.52 16 11 N -1.11 3.65 6.00 -10.61 -0.06 3.59 16 12 S 2.71 -0.44 5.80 -107.50 -0.62 -1.06 16 13 O -0.95 -2.49 17.64 -57.17 -1.01 -3.50 16 14 O -0.95 -2.62 17.10 -57.17 -0.98 -3.60 16 15 C -0.69 0.51 5.86 -41.21 -0.24 0.27 16 16 C -0.08 0.13 10.70 29.04 0.31 0.44 16 17 S 0.16 -0.32 20.58 -107.50 -2.21 -2.53 16 18 C -0.23 0.26 5.72 -36.00 -0.21 0.06 16 19 C -0.03 0.04 2.96 36.00 0.11 0.15 16 20 O -0.53 0.43 12.86 -35.23 -0.45 -0.02 16 21 Si 0.65 -1.37 30.97 -169.99 -5.26 -6.63 16 22 C -0.05 0.02 9.56 -41.21 -0.39 -0.37 16 23 C -0.11 0.46 7.16 -25.92 -0.19 0.28 16 24 H 0.13 -0.71 8.14 -51.93 -0.42 -1.13 16 25 H 0.13 -0.49 8.14 -51.92 -0.42 -0.91 16 26 H 0.13 -0.69 8.14 -51.92 -0.42 -1.11 16 27 H 0.09 -0.41 8.10 -51.93 -0.42 -0.83 16 28 H 0.10 -0.35 8.10 -51.93 -0.42 -0.77 16 29 H 0.09 -0.33 7.00 -51.93 -0.36 -0.70 16 30 H 0.07 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.42 -2.11 8.64 -34.47 -0.30 -2.41 16 32 H 0.19 -0.65 8.00 -52.49 -0.42 -1.07 16 33 H 0.13 -0.22 7.96 -51.93 -0.41 -0.64 16 34 H 0.38 -1.70 8.70 45.56 0.40 -1.30 16 35 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 36 H -0.24 0.06 7.11 56.52 0.40 0.46 16 37 H 0.16 -0.12 7.96 -52.49 -0.42 -0.54 16 38 H 0.11 -0.45 7.53 -51.93 -0.39 -0.85 16 39 H 0.09 -0.45 8.10 -51.92 -0.42 -0.87 16 LS Contribution 367.98 15.07 5.55 5.55 Total: 0.00 -15.18 367.98 -12.76 -27.94 By element: Atomic # 1 Polarization: -10.55 SS G_CDS: -4.88 Total: -15.43 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.20 Total: 6.40 kcal Atomic # 7 Polarization: 3.65 SS G_CDS: -0.06 Total: 3.59 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -4.49 Total: -13.85 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.26 Total: -6.63 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -3.40 Total: -7.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -15.18 -12.76 -27.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17836388_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.039 kcal (2) G-P(sol) polarization free energy of solvation -15.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds