Wall clock time and date at job start Tue Mar 9 2021 13:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42104 * 108.57659 * 2 1 4 4 O 1.42097 * 108.57977 * 228.97483 * 2 1 3 5 5 C 1.81401 * 101.91940 * 114.48572 * 2 1 3 6 6 H 1.09002 * 112.85014 * 55.33657 * 5 2 1 7 7 C 1.53781 * 113.61581 * 186.53161 * 5 2 1 8 8 C 1.53777 * 87.08336 * 140.06322 * 7 5 2 9 9 H 1.08996 * 113.61474 * 220.01758 * 8 7 5 10 10 C 1.53002 * 113.61002 * 89.11664 * 8 7 5 11 11 N 1.46502 * 109.46845 * 174.99937 * 10 8 7 12 12 S 1.65597 * 119.99956 * 165.00272 * 11 10 8 13 13 O 1.42097 * 106.40358 * 178.54144 * 12 11 10 14 14 O 1.42108 * 106.40158 * 311.45901 * 12 11 10 15 15 C 1.76196 * 107.22167 * 64.99690 * 12 11 10 16 16 C 1.33392 * 122.53575 * 90.02391 * 15 12 11 17 17 S 1.75886 * 109.59035 * 180.02562 * 16 15 12 18 18 C 1.75885 * 90.97441 * 0.02562 * 17 16 15 19 19 C 1.50697 * 125.20564 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.46864 * 120.02602 * 19 18 17 21 21 Si 1.86299 * 109.46901 * 0.02778 * 19 18 17 22 22 C 1.33394 * 109.58824 * 359.72997 * 18 17 16 23 23 C 1.53775 * 87.07992 * 334.56762 * 8 7 5 24 24 H 1.08996 * 109.47188 * 305.51365 * 1 2 3 25 25 H 1.08999 * 109.46989 * 65.51428 * 1 2 3 26 26 H 1.09000 * 109.46814 * 185.51207 * 1 2 3 27 27 H 1.08997 * 113.61673 * 254.61871 * 7 5 2 28 28 H 1.09005 * 113.61396 * 25.51699 * 7 5 2 29 29 H 1.08997 * 109.47421 * 294.99809 * 10 8 7 30 30 H 1.09002 * 109.47366 * 55.00252 * 10 8 7 31 31 H 0.97003 * 120.00236 * 344.99887 * 11 10 8 32 32 H 1.07990 * 125.20375 * 0.02848 * 16 15 12 33 33 H 1.08993 * 109.47144 * 240.02479 * 19 18 17 34 34 H 0.96701 * 113.99907 * 299.99871 * 20 19 18 35 35 H 1.48510 * 109.99601 * 179.97438 * 21 19 18 36 36 H 1.48495 * 110.00111 * 301.31267 * 21 19 18 37 37 H 1.08000 * 122.53543 * 180.23813 * 22 18 17 38 38 H 1.08993 * 113.61636 * 270.87622 * 23 8 7 39 39 H 1.09008 * 113.61006 * 139.97865 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.7172 -1.7081 1.7571 7 6 3.6857 -0.7198 1.9671 8 6 3.2641 -0.3653 3.4029 9 1 3.9069 0.3770 3.8760 10 6 3.0148 -1.5882 4.2879 11 7 2.7370 -1.1507 5.6583 12 16 2.0713 -2.2072 6.7458 13 8 1.9597 -1.5015 7.9741 14 8 0.9627 -2.8101 6.0924 15 6 3.2485 -3.4903 7.0143 16 6 4.1762 -3.4243 7.9705 17 16 5.1649 -4.8785 7.9345 18 6 4.2359 -5.5128 6.5825 19 6 4.4806 -6.8366 5.9052 20 8 3.3123 -7.6518 6.0167 21 14 5.9177 -7.6957 6.7221 22 6 3.2781 -4.6452 6.2518 23 6 1.9816 0.2276 2.7959 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 4.1649 -1.6949 1.8809 28 1 4.2433 0.0726 1.4676 29 1 2.1605 -2.1462 3.9045 30 1 3.8981 -2.2269 4.2824 31 1 2.9432 -0.2422 5.9286 32 1 4.3011 -2.6035 8.6611 33 1 4.7079 -6.6695 4.8524 34 1 3.0507 -7.8417 6.9281 35 1 6.1689 -9.0029 6.0636 36 1 7.1314 -6.8441 6.6408 37 1 2.5808 -4.8284 5.4476 38 1 2.0731 1.2789 2.5231 39 1 1.0849 0.0172 3.3790 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17836388_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:07 Heat of formation + Delta-G solvation = -112.942410 kcal Electronic energy + Delta-G solvation = -26925.093636 eV Core-core repulsion = 22795.650058 eV Total energy + Delta-G solvation = -4129.443577 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.035 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39980 -39.47801 -38.38655 -38.00094 -37.52064 -37.05112 -37.02096 -35.63793 -31.80565 -30.43340 -28.67369 -27.21270 -26.78117 -25.10375 -24.85406 -21.41183 -20.74536 -20.02781 -19.66555 -19.19293 -18.50679 -18.27127 -17.84371 -17.62552 -17.13544 -16.99745 -16.90957 -16.32858 -16.06780 -15.57233 -15.37310 -15.35910 -14.91795 -14.30933 -14.23624 -14.13056 -14.01706 -13.94085 -13.90901 -13.75663 -13.59642 -13.34009 -13.22358 -13.20452 -13.07788 -12.95475 -12.88902 -12.68552 -12.55623 -12.19541 -11.97374 -11.65240 -11.57775 -11.49410 -10.93968 -10.71968 -10.49168 -10.15349 -9.83425 -5.17184 -0.90608 -0.78123 -0.46199 0.34632 0.60539 0.97101 1.19629 1.53179 1.83977 1.84720 2.05672 2.64102 2.68380 2.93936 3.19222 3.30322 3.41734 3.44564 3.52294 3.62423 3.69057 3.91851 4.08163 4.17036 4.21677 4.24815 4.38462 4.40784 4.44952 4.60045 4.65298 4.66825 4.78936 4.90933 4.95333 4.97075 4.99870 5.06252 5.08167 5.30443 6.04885 6.63483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.418 3.582 3 O -0.980 6.980 4 O -0.993 6.993 5 C -0.595 4.595 6 H 0.180 0.820 7 C -0.112 4.112 8 C -0.101 4.101 9 H 0.110 0.890 10 C 0.122 3.878 11 N -1.103 6.103 12 S 2.728 3.272 13 O -0.984 6.984 14 O -0.980 6.980 15 C -0.695 4.695 16 C -0.085 4.085 17 S 0.183 5.817 18 C -0.234 4.234 19 C -0.030 4.030 20 O -0.549 6.549 21 Si 0.723 3.277 22 C -0.056 4.056 23 C -0.118 4.118 24 H 0.151 0.849 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.431 0.569 32 H 0.203 0.797 33 H 0.126 0.874 34 H 0.397 0.603 35 H -0.271 1.271 36 H -0.259 1.259 37 H 0.155 0.845 38 H 0.108 0.892 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -1.035 4.800 5.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.607 3.393 3 O -0.977 6.977 4 O -0.990 6.990 5 C -0.707 4.707 6 H 0.198 0.802 7 C -0.151 4.151 8 C -0.122 4.122 9 H 0.128 0.872 10 C -0.004 4.004 11 N -0.867 5.867 12 S 2.816 3.184 13 O -0.974 6.974 14 O -0.970 6.970 15 C -0.795 4.795 16 C -0.225 4.225 17 S 0.447 5.553 18 C -0.352 4.352 19 C -0.143 4.143 20 O -0.357 6.357 21 Si 0.626 3.374 22 C -0.085 4.085 23 C -0.156 4.156 24 H 0.169 0.831 25 H 0.147 0.853 26 H 0.168 0.832 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.269 0.731 32 H 0.220 0.780 33 H 0.143 0.857 34 H 0.247 0.753 35 H -0.197 1.197 36 H -0.184 1.184 37 H 0.173 0.827 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.491 -1.717 4.525 5.967 hybrid contribution -1.225 0.551 -0.902 1.617 sum 2.267 -1.166 3.623 4.430 Atomic orbital electron populations 1.30117 1.23034 1.13614 1.12928 1.07567 0.79628 0.74482 0.77636 1.93547 1.80821 1.36152 1.87226 1.93540 1.80922 1.67735 1.56789 1.31719 1.07919 1.13512 1.17506 0.80250 1.22772 0.90949 1.04918 0.96468 1.22351 0.98067 0.97582 0.94185 0.87219 1.21373 1.02796 0.96682 0.79509 1.55222 1.83008 1.26241 1.22188 1.00734 0.73031 0.72503 0.72105 1.93579 1.86380 1.72830 1.44656 1.93565 1.49208 1.78217 1.76039 1.29864 1.21371 1.18804 1.09502 1.26222 0.94883 1.02723 0.98627 1.84360 1.31459 1.11453 1.28009 1.25178 1.03206 1.03146 1.03661 1.24544 0.97904 0.87947 1.03900 1.86508 1.45194 1.69567 1.34411 0.94177 0.75365 0.79044 0.88863 1.19680 0.98284 0.90650 0.99894 1.22973 1.00639 0.98370 0.93649 0.83053 0.85255 0.83232 0.87990 0.88578 0.89299 0.89551 0.73143 0.78019 0.85663 0.75316 1.19672 1.18431 0.82704 0.87374 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.43 10.62 113.37 1.20 6.64 16 2 S 2.42 -4.40 5.29 -56.49 -0.30 -4.69 16 3 O -0.98 -5.72 17.40 -127.37 -2.22 -7.94 16 4 O -0.99 -7.72 18.10 -127.37 -2.30 -10.02 16 5 C -0.60 4.82 3.81 31.12 0.12 4.94 16 6 H 0.18 -2.36 7.72 -2.39 -0.02 -2.38 16 7 C -0.11 0.81 7.26 31.12 0.23 1.04 16 8 C -0.10 0.95 3.98 -10.27 -0.04 0.91 16 9 H 0.11 -1.24 8.12 -2.39 -0.02 -1.26 16 10 C 0.12 -1.08 5.90 86.38 0.51 -0.57 16 11 N -1.10 8.21 6.00 -187.48 -1.12 7.09 16 12 S 2.73 -1.47 5.80 -56.49 -0.33 -1.80 16 13 O -0.98 -5.13 17.64 -128.00 -2.26 -7.38 16 14 O -0.98 -5.48 17.10 -128.00 -2.19 -7.67 16 15 C -0.69 1.39 5.86 21.22 0.12 1.51 16 16 C -0.09 0.36 10.70 66.72 0.71 1.07 16 17 S 0.18 -0.92 20.58 -56.49 -1.16 -2.08 16 18 C -0.23 0.68 5.72 24.59 0.14 0.82 16 19 C -0.03 0.10 2.96 71.23 0.21 0.31 16 20 O -0.55 1.03 12.86 -148.98 -1.92 -0.88 16 21 Si 0.72 -3.09 30.97 68.60 2.12 -0.97 16 22 C -0.06 0.08 9.56 21.22 0.20 0.28 16 23 C -0.12 1.08 7.16 31.12 0.22 1.30 16 24 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 25 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.15 -1.82 8.14 -2.39 -0.02 -1.84 16 27 H 0.10 -0.94 8.10 -2.39 -0.02 -0.96 16 28 H 0.10 -0.56 8.10 -2.38 -0.02 -0.58 16 29 H 0.09 -0.80 7.00 -2.39 -0.02 -0.82 16 30 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.43 -4.75 8.64 -96.74 -0.84 -5.59 16 32 H 0.20 -1.65 8.00 -2.92 -0.02 -1.67 16 33 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 34 H 0.40 -3.70 8.70 -74.06 -0.64 -4.35 16 35 H -0.27 -0.66 7.11 99.48 0.71 0.05 16 36 H -0.26 0.19 7.11 99.48 0.71 0.89 16 37 H 0.16 -0.24 7.96 -2.91 -0.02 -0.26 16 38 H 0.11 -0.93 7.53 -2.39 -0.02 -0.95 16 39 H 0.10 -1.19 8.10 -2.38 -0.02 -1.21 16 Total: 0.00 -35.04 367.98 -8.38 -43.42 By element: Atomic # 1 Polarization: -24.98 SS G_CDS: -0.34 Total: -25.32 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 3.63 Total: 18.25 kcal Atomic # 7 Polarization: 8.21 SS G_CDS: -1.12 Total: 7.09 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -10.88 Total: -33.90 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.12 Total: -0.97 kcal Atomic # 16 Polarization: -6.79 SS G_CDS: -1.79 Total: -8.58 kcal Total: -35.04 -8.38 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17836388_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.523 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds