Wall clock time and date at job start Tue Mar 9 2021 13:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.46876 * 2 1 4 4 C 1.50704 * 109.47158 * 240.00049 * 2 1 3 5 5 C 1.38233 * 119.99850 * 299.99933 * 4 2 1 6 6 C 1.38235 * 119.99819 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00136 * 0.02562 * 6 5 4 8 8 S 1.76198 * 120.00181 * 179.97438 * 7 6 5 9 9 O 1.42106 * 106.40224 * 336.45971 * 8 7 6 10 10 O 1.42102 * 106.40421 * 203.53981 * 8 7 6 11 11 N 1.65596 * 107.21921 * 90.00132 * 8 7 6 12 12 C 1.46496 * 120.00473 * 64.99808 * 11 8 7 13 13 C 1.52999 * 109.47246 * 165.00183 * 12 11 8 14 14 C 1.53006 * 109.46811 * 180.02562 * 13 12 11 15 15 H 1.08989 * 112.84969 * 316.19674 * 14 13 12 16 16 C 1.53784 * 113.61171 * 87.50542 * 14 13 12 17 17 C 1.53779 * 87.07962 * 139.97968 * 16 14 13 18 18 H 1.08999 * 113.69285 * 89.12126 * 17 16 14 19 19 O 1.42900 * 113.61321 * 220.01775 * 17 16 14 20 20 C 1.53779 * 87.08153 * 334.56390 * 17 16 14 21 21 C 1.38237 * 120.00031 * 0.25383 * 7 6 5 22 22 C 1.38235 * 119.99873 * 119.97377 * 4 2 1 23 23 H 0.96699 * 114.00017 * 300.00121 * 1 2 3 24 24 H 1.09000 * 109.47263 * 119.99858 * 2 1 3 25 25 H 1.48503 * 110.00319 * 299.99845 * 3 2 1 26 26 H 1.48506 * 110.00430 * 61.31919 * 3 2 1 27 27 H 1.07999 * 120.00012 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.99756 * 180.02562 * 6 5 4 29 29 H 0.97004 * 119.99988 * 245.00307 * 11 8 7 30 30 H 1.09009 * 109.46918 * 45.00174 * 12 11 8 31 31 H 1.09001 * 109.47282 * 285.00543 * 12 11 8 32 32 H 1.08992 * 109.47188 * 60.00457 * 13 12 11 33 33 H 1.08997 * 109.46828 * 300.00176 * 13 12 11 34 34 H 1.09005 * 113.60951 * 254.52327 * 16 14 13 35 35 H 1.08996 * 113.61961 * 25.42950 * 16 14 13 36 36 H 0.96701 * 113.99914 * 277.49153 * 19 17 16 37 37 H 1.08999 * 113.61946 * 270.88503 * 20 17 16 38 38 H 1.09002 * 113.69216 * 139.99129 * 20 17 16 39 39 H 1.07999 * 119.99958 * 179.72345 * 21 7 6 40 40 H 1.08004 * 119.99960 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5974 -2.0338 -1.4492 6 6 2.0578 -2.6853 -2.5782 7 6 2.8525 -2.0136 -3.4881 8 16 3.4398 -2.8441 -4.9267 9 8 3.4290 -4.2319 -4.6214 10 8 4.6073 -2.1490 -5.3429 11 7 2.3118 -2.6186 -6.1179 12 6 2.0544 -1.2734 -6.6379 13 6 1.2740 -1.3745 -7.9500 14 6 1.0058 0.0305 -8.4933 15 1 0.6809 0.7279 -7.7214 16 6 2.1380 0.5742 -9.3807 17 6 1.0411 1.1526 -10.2901 18 1 0.7258 2.1580 -10.0111 19 8 1.3290 1.0281 -11.6843 20 6 0.1198 0.0460 -9.7502 21 6 3.1912 -0.6918 -3.2664 22 6 2.7257 -0.0384 -2.1407 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5138 0.8900 25 1 1.5615 2.4679 -1.2085 26 1 1.5878 2.4587 1.2243 27 1 0.9769 -2.5588 -0.7381 28 1 1.7965 -3.7192 -2.7493 29 1 1.8213 -3.3772 -6.4713 30 1 3.0022 -0.7657 -6.8171 31 1 1.4712 -0.7082 -5.9109 32 1 0.3263 -1.8822 -7.7708 33 1 1.8572 -1.9397 -8.6769 34 1 2.7473 1.3354 -8.8933 35 1 2.7332 -0.2055 -9.8559 36 1 1.9080 1.7212 -12.0298 37 1 0.1631 -0.8781 -10.3265 38 1 -0.9006 0.3793 -9.5609 39 1 3.8158 -0.1683 -3.9751 40 1 2.9866 0.9956 -1.9697 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17837620_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:18 Heat of formation + Delta-G solvation = -102.491043 kcal Electronic energy + Delta-G solvation = -23925.735101 eV Core-core repulsion = 20220.886188 eV Total energy + Delta-G solvation = -3704.848913 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67882 -40.51241 -38.24704 -37.92154 -37.20588 -36.82723 -35.72697 -33.21108 -32.24167 -31.07918 -27.30867 -26.79199 -25.44539 -24.12341 -22.91395 -22.70835 -20.78994 -20.41215 -19.22915 -18.75699 -18.56523 -18.20802 -17.42639 -17.06727 -16.86631 -16.39435 -16.14229 -15.79859 -15.66812 -15.45612 -15.35578 -14.68769 -14.51800 -14.37787 -14.03778 -13.95759 -13.58539 -13.46268 -13.23344 -13.09204 -13.02433 -12.91578 -12.85553 -12.47425 -12.47367 -12.04003 -11.95191 -11.83738 -11.65494 -11.27685 -10.81693 -10.75078 -10.62091 -10.35772 -10.16703 -5.11917 -0.68989 -0.35932 0.16236 1.07045 1.43938 1.78651 1.89805 2.28967 2.75621 3.05076 3.15840 3.28197 3.41274 3.52595 3.55867 3.66517 3.72466 3.76038 3.87727 3.91117 4.05689 4.09399 4.15680 4.20940 4.33439 4.41085 4.48009 4.54101 4.64463 4.75120 4.76144 4.77810 4.85023 4.90580 4.94757 4.95943 5.07198 5.16836 5.21979 5.38500 5.65053 5.85138 6.21887 6.68579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.087 4.087 3 Si 0.685 3.315 4 C -0.016 4.016 5 C -0.113 4.113 6 C -0.017 4.017 7 C -0.675 4.675 8 S 2.696 3.304 9 O -0.955 6.955 10 O -0.952 6.952 11 N -1.117 6.117 12 C 0.114 3.886 13 C -0.114 4.114 14 C -0.110 4.110 15 H 0.096 0.904 16 C -0.167 4.167 17 C 0.073 3.927 18 H 0.081 0.919 19 O -0.561 6.561 20 C -0.125 4.125 21 C -0.015 4.015 22 C -0.137 4.137 23 H 0.384 0.616 24 H 0.084 0.916 25 H -0.252 1.252 26 H -0.257 1.257 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.420 0.580 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.379 0.621 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 3.989 2.071 4.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.196 4.196 3 Si 0.585 3.415 4 C -0.017 4.017 5 C -0.132 4.132 6 C -0.036 4.036 7 C -0.762 4.762 8 S 2.785 3.215 9 O -0.945 6.945 10 O -0.942 6.942 11 N -0.878 5.878 12 C -0.012 4.012 13 C -0.153 4.153 14 C -0.129 4.129 15 H 0.115 0.885 16 C -0.205 4.205 17 C 0.014 3.986 18 H 0.099 0.901 19 O -0.367 6.367 20 C -0.162 4.162 21 C -0.035 4.035 22 C -0.155 4.155 23 H 0.232 0.768 24 H 0.102 0.898 25 H -0.177 1.177 26 H -0.182 1.182 27 H 0.154 0.846 28 H 0.162 0.838 29 H 0.255 0.745 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.226 0.774 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.925 3.695 1.588 4.127 hybrid contribution -1.547 0.471 0.958 1.880 sum -2.472 4.166 2.546 5.473 Atomic orbital electron populations 1.86569 1.17245 1.80357 1.50018 1.24946 0.84970 1.11515 0.98178 0.94927 0.91675 0.74144 0.80757 1.19628 0.94124 0.94094 0.93822 1.21161 0.99785 0.94170 0.98062 1.20985 0.91135 0.99500 0.91957 1.30996 1.15491 1.07399 1.22322 1.01874 0.73287 0.73373 0.72954 1.93619 1.86247 1.30349 1.84335 1.93606 1.44294 1.75379 1.80929 1.55528 1.61532 1.15814 1.54900 1.21384 1.01284 0.82235 0.96247 1.21724 1.00700 0.96911 0.95980 1.22292 0.97514 0.96844 0.96242 0.88542 1.23810 0.97195 1.01565 0.97929 1.23346 0.96338 0.98192 0.80690 0.90088 1.86535 1.71583 1.54879 1.23673 1.23119 0.98099 0.99468 0.95549 1.20888 0.94176 0.91901 0.96494 1.21092 0.99643 1.00050 0.94699 0.76781 0.89790 1.17651 1.18206 0.84628 0.83849 0.74484 0.89884 0.91589 0.90667 0.90481 0.91027 0.88926 0.77351 0.88986 0.90738 0.83598 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.05 12.74 -35.23 -0.45 -0.40 16 2 C -0.09 0.10 2.81 36.01 0.10 0.20 16 3 Si 0.68 -1.34 29.79 -169.99 -5.06 -6.41 16 4 C -0.02 -0.01 5.42 -104.62 -0.57 -0.57 16 5 C -0.11 -0.07 9.61 -39.58 -0.38 -0.45 16 6 C -0.02 -0.01 9.52 -39.59 -0.38 -0.39 16 7 C -0.68 -0.51 5.95 -39.58 -0.24 -0.75 16 8 S 2.70 3.50 5.74 -107.50 -0.62 2.89 16 9 O -0.96 -3.97 17.28 -57.17 -0.99 -4.96 16 10 O -0.95 -3.70 16.75 -57.17 -0.96 -4.66 16 11 N -1.12 1.60 6.00 -10.61 -0.06 1.53 16 12 C 0.11 -0.24 6.21 -4.04 -0.03 -0.27 16 13 C -0.11 0.29 5.19 -26.73 -0.14 0.15 16 14 C -0.11 0.25 3.65 -89.80 -0.33 -0.08 16 15 H 0.10 -0.30 8.13 -51.94 -0.42 -0.72 16 16 C -0.17 0.27 7.46 -25.92 -0.19 0.07 16 17 C 0.07 -0.06 5.21 -25.92 -0.14 -0.20 16 18 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 19 O -0.56 -0.41 13.67 -35.23 -0.48 -0.89 16 20 C -0.12 0.13 7.47 -25.92 -0.19 -0.07 16 21 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 22 C -0.14 0.04 8.67 -39.58 -0.34 -0.30 16 23 H 0.38 -1.53 8.74 45.56 0.40 -1.13 16 24 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 25 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 26 H -0.26 -0.02 7.11 56.52 0.40 0.38 16 27 H 0.14 -0.07 8.06 -52.49 -0.42 -0.49 16 28 H 0.14 -0.08 7.62 -52.48 -0.40 -0.48 16 29 H 0.42 -1.26 8.65 -34.47 -0.30 -1.56 16 30 H 0.08 -0.16 7.75 -51.92 -0.40 -0.56 16 31 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 33 H 0.08 -0.16 7.84 -51.93 -0.41 -0.57 16 34 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.09 -0.06 7.89 -51.93 -0.41 -0.47 16 36 H 0.38 -1.22 9.12 45.56 0.42 -0.80 16 37 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 39 H 0.15 -0.26 7.61 -52.49 -0.40 -0.66 16 40 H 0.14 -0.35 4.88 -52.48 -0.26 -0.60 16 LS Contribution 345.97 15.07 5.21 5.21 Total: 0.00 -10.93 345.97 -11.35 -22.28 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: -4.75 Total: -11.56 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.19 Total: -3.03 kcal Atomic # 7 Polarization: 1.60 SS G_CDS: -0.06 Total: 1.53 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -2.88 Total: -10.91 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.06 Total: -6.41 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -0.62 Total: 2.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -10.93 -11.35 -22.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.211 kcal (2) G-P(sol) polarization free energy of solvation -10.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds