Wall clock time and date at job start Tue Mar 9 2021 13:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.46853 * 2 1 4 4 C 1.50691 * 109.47075 * 240.00166 * 2 1 3 5 5 C 1.33395 * 122.53947 * 284.99514 * 4 2 1 6 6 S 1.76197 * 125.20067 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40604 * 66.17878 * 6 5 4 8 8 O 1.42103 * 106.40296 * 293.25631 * 6 5 4 9 9 N 1.65600 * 107.21889 * 179.71774 * 6 5 4 10 10 C 1.46494 * 120.00218 * 64.99915 * 9 6 5 11 11 C 1.53000 * 109.47355 * 165.00117 * 10 9 6 12 12 C 1.53002 * 109.47214 * 180.02562 * 11 10 9 13 13 H 1.08995 * 112.85150 * 43.80181 * 12 11 10 14 14 C 1.53773 * 113.61607 * 175.00259 * 12 11 10 15 15 C 1.53774 * 87.08467 * 140.06417 * 14 12 11 16 16 H 1.08995 * 113.62199 * 89.19772 * 15 14 12 17 17 O 1.42903 * 113.61673 * 220.02206 * 15 14 12 18 18 C 1.53777 * 87.08184 * 334.56349 * 15 14 12 19 19 S 1.75881 * 109.59551 * 179.75181 * 5 4 2 20 20 C 1.75884 * 90.97049 * 0.23208 * 19 5 4 21 21 C 1.33386 * 109.59510 * 359.97438 * 20 19 5 22 22 H 0.96697 * 114.00403 * 59.99864 * 1 2 3 23 23 H 1.08997 * 109.46743 * 119.99762 * 2 1 3 24 24 H 1.48507 * 110.00071 * 298.67802 * 3 2 1 25 25 H 1.48498 * 110.00531 * 60.00225 * 3 2 1 26 26 H 0.97005 * 120.00073 * 245.00015 * 9 6 5 27 27 H 1.09002 * 109.47121 * 44.99738 * 10 9 6 28 28 H 1.09005 * 109.47132 * 285.00203 * 10 9 6 29 29 H 1.09004 * 109.47262 * 60.00284 * 11 10 9 30 30 H 1.08996 * 109.47222 * 299.99956 * 11 10 9 31 31 H 1.09002 * 113.61658 * 25.51251 * 14 12 11 32 32 H 1.08999 * 113.61565 * 254.61366 * 14 12 11 33 33 H 0.96700 * 114.00311 * 179.97438 * 17 15 14 34 34 H 1.08996 * 113.61847 * 139.97775 * 18 15 14 35 35 H 1.08999 * 113.61851 * 270.88748 * 18 15 14 36 36 H 1.07996 * 125.20389 * 180.02562 * 20 19 5 37 37 H 1.07997 * 122.54213 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 1.8961 -2.0378 -1.3572 6 16 1.2753 -3.1576 -0.1467 7 8 -0.1207 -2.9102 -0.0497 8 8 2.1578 -3.0775 0.9642 9 7 1.4376 -4.6858 -0.7636 10 6 2.7716 -5.2353 -1.0176 11 6 2.6699 -6.7485 -1.2195 12 6 4.0633 -7.3225 -1.4842 13 1 4.8229 -6.9141 -0.8177 14 6 4.0892 -8.8570 -1.5809 15 6 5.0893 -8.6889 -2.7368 16 1 6.1295 -8.6554 -2.4130 17 8 4.8735 -9.5988 -3.8174 18 6 4.4690 -7.3008 -2.9674 19 16 2.5570 -2.4988 -2.9205 20 6 2.8592 -0.8135 -3.3232 21 6 2.4669 -0.0351 -2.3136 22 1 -0.3934 0.4417 -0.7650 23 1 1.7922 -0.5138 0.8900 24 1 1.5878 2.4585 -1.2243 25 1 1.5615 2.4679 1.2085 26 1 0.6493 -5.2171 -0.9568 27 1 3.4193 -5.0250 -0.1665 28 1 3.1890 -4.7764 -1.9139 29 1 2.0223 -6.9588 -2.0707 30 1 2.2526 -7.2074 -0.3233 31 1 3.1374 -9.2914 -1.8866 32 1 4.5146 -9.3427 -0.7027 33 1 5.4992 -9.4976 -4.5477 34 1 5.2009 -6.5300 -3.2085 35 1 3.6210 -7.3097 -3.6522 36 1 3.2949 -0.4626 -4.2470 37 1 2.5570 1.0408 -2.3406 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17837620_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:20 Heat of formation + Delta-G solvation = -90.318821 kcal Electronic energy + Delta-G solvation = -23044.851913 eV Core-core repulsion = 19429.683073 eV Total energy + Delta-G solvation = -3615.168840 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54898 -40.11755 -38.12937 -37.27599 -37.19842 -36.77096 -35.78396 -31.53093 -31.12995 -28.06009 -26.82606 -25.48976 -24.41628 -22.85502 -21.61807 -20.68546 -19.91019 -19.72357 -18.63037 -18.45203 -17.91357 -17.35625 -16.81847 -16.57146 -16.28059 -16.05083 -15.94612 -15.64367 -15.48576 -15.33554 -14.52066 -14.20694 -14.10230 -13.79064 -13.60507 -13.49959 -13.24725 -13.04756 -12.97743 -12.84348 -12.67281 -12.58506 -12.47281 -12.26312 -12.03408 -11.75282 -11.62997 -11.30139 -10.81298 -10.74623 -10.71758 -10.47075 -9.72938 -5.04739 -0.71095 -0.66945 0.16708 0.53158 1.12466 1.16870 1.49150 1.87800 1.92207 2.64563 3.13816 3.24098 3.37705 3.39821 3.48476 3.59421 3.71159 3.82675 3.85898 3.88383 4.01646 4.04254 4.17830 4.28499 4.37803 4.43628 4.57311 4.61121 4.70582 4.72392 4.77463 4.81615 4.92451 4.97378 5.02861 5.14348 5.35367 5.78907 6.32651 6.65290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.508 6.508 2 C -0.106 4.106 3 Si 0.711 3.289 4 C 0.007 3.993 5 C -0.765 4.765 6 S 2.715 3.285 7 O -0.930 6.930 8 O -0.945 6.945 9 N -1.120 6.120 10 C 0.111 3.889 11 C -0.114 4.114 12 C -0.110 4.110 13 H 0.099 0.901 14 C -0.125 4.125 15 C 0.073 3.927 16 H 0.082 0.918 17 O -0.561 6.561 18 C -0.168 4.168 19 S 0.206 5.794 20 C -0.164 4.164 21 C -0.163 4.163 22 H 0.379 0.621 23 H 0.127 0.873 24 H -0.253 1.253 25 H -0.248 1.248 26 H 0.423 0.577 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.379 0.621 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 0.108 -4.948 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.610 3.390 4 C -0.011 4.011 5 C -0.965 4.965 6 S 2.799 3.201 7 O -0.920 6.920 8 O -0.935 6.935 9 N -0.882 5.882 10 C -0.015 4.015 11 C -0.153 4.153 12 C -0.129 4.129 13 H 0.117 0.883 14 C -0.162 4.162 15 C 0.014 3.986 16 H 0.100 0.900 17 O -0.367 6.367 18 C -0.205 4.205 19 S 0.472 5.528 20 C -0.302 4.302 21 C -0.193 4.193 22 H 0.226 0.774 23 H 0.145 0.855 24 H -0.178 1.178 25 H -0.172 1.172 26 H 0.258 0.742 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.226 0.774 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.196 0.804 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.010 -0.604 -3.976 6.424 hybrid contribution -0.738 1.330 -1.147 1.905 sum 4.272 0.725 -5.122 6.709 Atomic orbital electron populations 1.86788 1.15609 1.79979 1.49028 1.25351 0.85574 1.13506 0.97275 0.94611 0.91060 0.72490 0.80873 1.18975 0.94121 0.91317 0.96653 1.35767 1.26030 1.14453 1.20255 1.01594 0.73842 0.71724 0.72931 1.93670 1.29524 1.83708 1.85079 1.93620 1.67690 1.85867 1.46309 1.55610 1.14625 1.33226 1.84761 1.21503 0.82617 0.95760 1.01619 1.21727 0.97110 0.93090 1.03336 1.22307 0.97267 0.96122 0.97250 0.88303 1.23119 1.00270 0.95547 0.97288 1.23347 0.98170 0.88706 0.88332 0.90002 1.86539 1.59258 1.59844 1.31020 1.23809 1.01844 0.98118 0.96751 1.84078 1.56309 1.06036 1.06390 1.26167 1.03651 0.96911 1.03429 1.20330 1.03523 1.02085 0.93365 0.77356 0.85485 1.17798 1.17211 0.74174 0.89566 0.91679 0.90588 0.90246 0.88988 0.90597 0.77395 0.91083 0.89056 0.80401 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.59 12.27 -36.45 -0.45 -2.04 16 2 C -0.11 -0.17 2.33 36.00 0.08 -0.09 16 3 Si 0.71 -0.60 30.45 -169.99 -5.18 -5.77 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -1.16 6.46 29.04 0.19 -0.97 16 6 S 2.72 7.85 5.07 -107.50 -0.54 7.30 16 7 O -0.93 -5.57 17.41 -59.76 -1.04 -6.61 16 8 O -0.94 -4.96 16.99 -57.17 -0.97 -5.93 16 9 N -1.12 0.76 5.81 -10.61 -0.06 0.69 16 10 C 0.11 -0.21 5.96 -4.04 -0.02 -0.24 16 11 C -0.11 0.31 5.19 -26.73 -0.14 0.17 16 12 C -0.11 0.29 3.65 -89.81 -0.33 -0.03 16 13 H 0.10 -0.33 8.13 -51.93 -0.42 -0.75 16 14 C -0.12 0.18 7.47 -25.93 -0.19 -0.02 16 15 C 0.07 -0.11 5.21 -25.92 -0.14 -0.24 16 16 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 17 O -0.56 -0.06 13.67 -35.23 -0.48 -0.54 16 18 C -0.17 0.42 7.47 -25.92 -0.19 0.23 16 19 S 0.21 -0.25 21.09 -107.50 -2.27 -2.52 16 20 C -0.16 0.32 11.23 29.04 0.33 0.65 16 21 C -0.16 0.16 8.74 -41.21 -0.36 -0.20 16 22 H 0.38 -0.19 8.70 45.56 0.40 0.20 16 23 H 0.13 0.26 7.26 -51.93 -0.38 -0.12 16 24 H -0.25 0.04 6.81 56.52 0.38 0.43 16 25 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 26 H 0.42 -1.04 8.65 -34.47 -0.30 -1.34 16 27 H 0.09 -0.14 7.75 -51.93 -0.40 -0.54 16 28 H 0.07 -0.20 6.25 -51.93 -0.32 -0.52 16 29 H 0.08 -0.23 7.85 -51.93 -0.41 -0.64 16 30 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 31 H 0.09 -0.05 8.10 -51.93 -0.42 -0.47 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.38 -1.46 9.12 45.56 0.42 -1.05 16 34 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 35 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 36 H 0.18 -0.85 8.06 -52.49 -0.42 -1.27 16 37 H 0.16 -0.44 5.53 -52.49 -0.29 -0.73 16 LS Contribution 331.40 15.07 4.99 4.99 Total: 0.00 -10.52 331.40 -11.19 -21.71 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -3.87 Total: -10.00 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.32 Total: -1.28 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -0.06 Total: 0.69 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -2.94 Total: -15.12 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.18 Total: -5.77 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -2.81 Total: 4.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -10.52 -11.19 -21.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.610 kcal (2) G-P(sol) polarization free energy of solvation -10.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds