Wall clock time and date at job start Tue Mar 9 2021 13:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.46853 * 2 1 4 4 C 1.50691 * 109.47075 * 240.00166 * 2 1 3 5 5 C 1.33395 * 122.53947 * 284.99514 * 4 2 1 6 6 S 1.76197 * 125.20067 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40604 * 66.17878 * 6 5 4 8 8 O 1.42103 * 106.40296 * 293.25631 * 6 5 4 9 9 N 1.65600 * 107.21889 * 179.71774 * 6 5 4 10 10 C 1.46494 * 120.00218 * 64.99915 * 9 6 5 11 11 C 1.53000 * 109.47355 * 165.00117 * 10 9 6 12 12 C 1.53002 * 109.47214 * 180.02562 * 11 10 9 13 13 H 1.08995 * 112.85150 * 43.80181 * 12 11 10 14 14 C 1.53773 * 113.61607 * 175.00259 * 12 11 10 15 15 C 1.53774 * 87.08467 * 140.06417 * 14 12 11 16 16 H 1.08995 * 113.62199 * 89.19772 * 15 14 12 17 17 O 1.42903 * 113.61673 * 220.02206 * 15 14 12 18 18 C 1.53777 * 87.08184 * 334.56349 * 15 14 12 19 19 S 1.75881 * 109.59551 * 179.75181 * 5 4 2 20 20 C 1.75884 * 90.97049 * 0.23208 * 19 5 4 21 21 C 1.33386 * 109.59510 * 359.97438 * 20 19 5 22 22 H 0.96697 * 114.00403 * 59.99864 * 1 2 3 23 23 H 1.08997 * 109.46743 * 119.99762 * 2 1 3 24 24 H 1.48507 * 110.00071 * 298.67802 * 3 2 1 25 25 H 1.48498 * 110.00531 * 60.00225 * 3 2 1 26 26 H 0.97005 * 120.00073 * 245.00015 * 9 6 5 27 27 H 1.09002 * 109.47121 * 44.99738 * 10 9 6 28 28 H 1.09005 * 109.47132 * 285.00203 * 10 9 6 29 29 H 1.09004 * 109.47262 * 60.00284 * 11 10 9 30 30 H 1.08996 * 109.47222 * 299.99956 * 11 10 9 31 31 H 1.09002 * 113.61658 * 25.51251 * 14 12 11 32 32 H 1.08999 * 113.61565 * 254.61366 * 14 12 11 33 33 H 0.96700 * 114.00311 * 179.97438 * 17 15 14 34 34 H 1.08996 * 113.61847 * 139.97775 * 18 15 14 35 35 H 1.08999 * 113.61851 * 270.88748 * 18 15 14 36 36 H 1.07996 * 125.20389 * 180.02562 * 20 19 5 37 37 H 1.07997 * 122.54213 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2304 5 6 1.8961 -2.0378 -1.3572 6 16 1.2753 -3.1576 -0.1467 7 8 -0.1207 -2.9102 -0.0497 8 8 2.1578 -3.0775 0.9642 9 7 1.4376 -4.6858 -0.7636 10 6 2.7716 -5.2353 -1.0176 11 6 2.6699 -6.7485 -1.2195 12 6 4.0633 -7.3225 -1.4842 13 1 4.8229 -6.9141 -0.8177 14 6 4.0892 -8.8570 -1.5809 15 6 5.0893 -8.6889 -2.7368 16 1 6.1295 -8.6554 -2.4130 17 8 4.8735 -9.5988 -3.8174 18 6 4.4690 -7.3008 -2.9674 19 16 2.5570 -2.4988 -2.9205 20 6 2.8592 -0.8135 -3.3232 21 6 2.4669 -0.0351 -2.3136 22 1 -0.3934 0.4417 -0.7650 23 1 1.7922 -0.5138 0.8900 24 1 1.5878 2.4585 -1.2243 25 1 1.5615 2.4679 1.2085 26 1 0.6493 -5.2171 -0.9568 27 1 3.4193 -5.0250 -0.1665 28 1 3.1890 -4.7764 -1.9139 29 1 2.0223 -6.9588 -2.0707 30 1 2.2526 -7.2074 -0.3233 31 1 3.1374 -9.2914 -1.8866 32 1 4.5146 -9.3427 -0.7027 33 1 5.4992 -9.4976 -4.5477 34 1 5.2009 -6.5300 -3.2085 35 1 3.6210 -7.3097 -3.6522 36 1 3.2949 -0.4626 -4.2470 37 1 2.5570 1.0408 -2.3406 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17837620_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:20 Heat of formation + Delta-G solvation = -97.334327 kcal Electronic energy + Delta-G solvation = -23045.156128 eV Core-core repulsion = 19429.683073 eV Total energy + Delta-G solvation = -3615.473055 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38429 -40.10354 -38.42440 -37.29155 -37.22111 -37.07086 -35.71420 -31.47509 -31.03084 -28.11361 -26.65170 -25.37308 -24.36783 -22.71376 -21.65672 -20.53504 -19.97376 -19.72588 -18.74283 -18.37207 -17.96726 -17.43710 -16.84174 -16.46131 -16.29495 -16.08711 -15.91159 -15.68781 -15.37647 -15.30503 -14.40460 -14.15806 -14.06416 -13.76760 -13.63091 -13.38792 -13.35657 -13.30260 -13.25262 -12.82178 -12.71709 -12.52935 -12.40206 -12.32878 -11.87857 -11.62658 -11.58931 -11.11821 -10.81063 -10.71717 -10.60363 -10.41577 -9.62866 -4.98585 -0.83440 -0.67531 0.20729 0.64981 1.14009 1.24866 1.53098 1.84412 1.90500 2.47638 3.19297 3.31941 3.42919 3.48993 3.56937 3.67297 3.83070 3.93854 3.99729 4.04945 4.13656 4.20071 4.29022 4.34135 4.51092 4.64188 4.69273 4.76771 4.86665 4.88232 4.90277 4.97804 5.07383 5.10167 5.21026 5.32160 5.55098 5.88874 6.35516 6.92621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.135 4.135 3 Si 0.804 3.196 4 C 0.001 3.999 5 C -0.795 4.795 6 S 2.723 3.277 7 O -0.972 6.972 8 O -0.980 6.980 9 N -1.110 6.110 10 C 0.106 3.894 11 C -0.110 4.110 12 C -0.104 4.104 13 H 0.108 0.892 14 C -0.133 4.133 15 C 0.067 3.933 16 H 0.094 0.906 17 O -0.585 6.585 18 C -0.161 4.161 19 S 0.233 5.767 20 C -0.151 4.151 21 C -0.175 4.175 22 H 0.390 0.610 23 H 0.110 0.890 24 H -0.250 1.250 25 H -0.296 1.296 26 H 0.431 0.569 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.393 0.607 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.213 0.787 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 0.804 -6.968 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.243 4.243 3 Si 0.703 3.297 4 C -0.017 4.017 5 C -0.998 4.998 6 S 2.811 3.189 7 O -0.962 6.962 8 O -0.970 6.970 9 N -0.875 5.875 10 C -0.019 4.019 11 C -0.149 4.149 12 C -0.123 4.123 13 H 0.126 0.874 14 C -0.171 4.171 15 C 0.008 3.992 16 H 0.111 0.889 17 O -0.394 6.394 18 C -0.199 4.199 19 S 0.500 5.500 20 C -0.288 4.288 21 C -0.204 4.204 22 H 0.240 0.760 23 H 0.128 0.872 24 H -0.175 1.175 25 H -0.223 1.223 26 H 0.268 0.732 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.230 0.770 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.378 0.035 -6.005 8.760 hybrid contribution -1.147 1.044 -0.555 1.647 sum 5.231 1.079 -6.560 8.459 Atomic orbital electron populations 1.86740 1.16864 1.80763 1.50040 1.25829 0.85011 1.16223 0.97277 0.93583 0.89427 0.68561 0.78098 1.19134 0.94183 0.91371 0.97039 1.35475 1.28125 1.14504 1.21695 1.00832 0.72642 0.72383 0.73085 1.93608 1.31831 1.84677 1.86073 1.93567 1.68036 1.86611 1.48743 1.55328 1.15681 1.31997 1.84508 1.21681 0.81754 0.96333 1.02182 1.21709 0.97388 0.92303 1.03542 1.22290 0.97365 0.95129 0.97541 0.87410 1.23163 0.99890 0.96457 0.97579 1.23506 0.98741 0.89017 0.87946 0.88860 1.86494 1.60302 1.60559 1.32010 1.23751 1.01826 0.97804 0.96499 1.83919 1.55238 1.06743 1.04136 1.26652 1.01913 0.96108 1.04122 1.20479 1.03866 1.03227 0.92829 0.75985 0.87186 1.17493 1.22331 0.73159 0.89948 0.90174 0.90016 0.90442 0.90189 0.90588 0.75714 0.89783 0.89586 0.77029 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -4.47 12.27 -147.82 -1.81 -6.29 16 2 C -0.14 -0.63 2.33 71.23 0.17 -0.47 16 3 Si 0.80 -1.40 30.45 68.60 2.09 0.69 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -2.87 6.46 66.72 0.43 -2.44 16 6 S 2.72 21.11 5.07 -56.49 -0.29 20.82 16 7 O -0.97 -14.30 17.41 -125.53 -2.19 -16.48 16 8 O -0.98 -12.77 16.99 -128.00 -2.17 -14.95 16 9 N -1.11 0.41 5.81 -187.49 -1.09 -0.68 16 10 C 0.11 -0.39 5.96 86.38 0.51 0.12 16 11 C -0.11 0.60 5.19 30.60 0.16 0.76 16 12 C -0.10 0.60 3.65 -10.27 -0.04 0.56 16 13 H 0.11 -0.79 8.13 -2.39 -0.02 -0.81 16 14 C -0.13 0.34 7.47 31.12 0.23 0.58 16 15 C 0.07 -0.22 5.21 31.12 0.16 -0.05 16 16 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 17 O -0.59 -0.13 13.67 -148.98 -2.04 -2.17 16 18 C -0.16 0.95 7.47 31.12 0.23 1.18 16 19 S 0.23 -0.87 21.09 -56.49 -1.19 -2.06 16 20 C -0.15 0.98 11.23 66.72 0.75 1.73 16 21 C -0.18 0.63 8.74 21.22 0.19 0.82 16 22 H 0.39 0.20 8.70 -74.06 -0.64 -0.45 16 23 H 0.11 0.78 7.26 -2.39 -0.02 0.76 16 24 H -0.25 0.57 6.81 99.48 0.68 1.25 16 25 H -0.30 -1.75 7.11 99.48 0.71 -1.04 16 26 H 0.43 -1.67 8.65 -96.74 -0.84 -2.51 16 27 H 0.08 -0.22 7.75 -2.39 -0.02 -0.24 16 28 H 0.08 -0.55 6.25 -2.38 -0.01 -0.56 16 29 H 0.08 -0.53 7.85 -2.39 -0.02 -0.54 16 30 H 0.08 -0.38 8.14 -2.39 -0.02 -0.39 16 31 H 0.08 -0.02 8.10 -2.39 -0.02 -0.04 16 32 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.39 -3.09 9.12 -74.06 -0.68 -3.77 16 34 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.09 -0.39 7.90 -2.39 -0.02 -0.41 16 36 H 0.21 -2.89 8.06 -2.91 -0.02 -2.92 16 37 H 0.18 -1.46 5.53 -2.91 -0.02 -1.47 16 Total: 0.00 -26.10 331.40 -7.02 -33.12 By element: Atomic # 1 Polarization: -13.68 SS G_CDS: -1.02 Total: -14.69 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 2.69 Total: 2.69 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -1.09 Total: -0.68 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -8.21 Total: -39.89 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.09 Total: 0.69 kcal Atomic # 16 Polarization: 20.24 SS G_CDS: -1.48 Total: 18.76 kcal Total: -26.10 -7.02 -33.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.216 kcal (2) G-P(sol) polarization free energy of solvation -26.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds