Wall clock time and date at job start Tue Mar 9 2021 13:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20004 * 2 1 4 4 C 1.50702 * 122.54143 * 0.02562 * 3 2 1 5 5 O 1.42895 * 109.47207 * 311.38947 * 4 3 2 6 6 Si 1.86307 * 109.46721 * 71.38933 * 4 3 2 7 7 C 1.38429 * 114.91934 * 179.75986 * 3 2 1 8 8 S 1.76199 * 122.53837 * 180.26983 * 7 3 2 9 9 O 1.42097 * 106.40247 * 30.26214 * 8 7 3 10 10 O 1.42095 * 106.39954 * 163.17967 * 8 7 3 11 11 N 1.65600 * 107.21872 * 276.72017 * 8 7 3 12 12 C 1.46507 * 119.99890 * 65.00118 * 11 8 7 13 13 C 1.52996 * 109.47074 * 165.00049 * 12 11 8 14 14 C 1.52994 * 109.47129 * 180.02562 * 13 12 11 15 15 H 1.09003 * 112.85251 * 314.66459 * 14 13 12 16 16 C 1.53780 * 113.61790 * 85.86223 * 14 13 12 17 17 C 1.53955 * 87.02151 * 139.95110 * 16 14 13 18 18 H 1.09008 * 113.53684 * 89.19063 * 17 16 14 19 19 O 1.42898 * 113.74506 * 220.05659 * 17 16 14 20 20 C 1.53772 * 87.11060 * 334.63766 * 17 16 14 21 21 C 1.33386 * 114.91964 * 0.24742 * 7 3 2 22 22 C 1.50703 * 125.20320 * 179.97438 * 21 7 3 23 23 S 1.75880 * 125.20568 * 180.14212 * 2 1 3 24 24 H 1.09007 * 109.47158 * 89.55871 * 1 2 3 25 25 H 1.09004 * 109.46891 * 209.55520 * 1 2 3 26 26 H 1.09001 * 109.47333 * 329.55628 * 1 2 3 27 27 H 1.09004 * 109.46951 * 191.38687 * 4 3 2 28 28 H 0.96705 * 114.00145 * 67.44130 * 5 4 3 29 29 H 1.48499 * 109.99697 * 184.73176 * 6 4 3 30 30 H 1.48495 * 109.99785 * 306.05184 * 6 4 3 31 31 H 0.96995 * 119.99999 * 245.00146 * 11 8 7 32 32 H 1.08998 * 109.47091 * 285.00305 * 12 11 8 33 33 H 1.09004 * 109.47008 * 45.00195 * 12 11 8 34 34 H 1.09000 * 109.46866 * 299.99941 * 13 12 11 35 35 H 1.09002 * 109.47332 * 59.99709 * 13 12 11 36 36 H 1.08996 * 113.61697 * 254.53241 * 16 14 13 37 37 H 1.09001 * 113.61492 * 25.43381 * 16 14 13 38 38 H 0.96699 * 114.00313 * 277.60237 * 19 17 16 39 39 H 1.08999 * 113.61798 * 270.81059 * 20 17 16 40 40 H 1.09000 * 113.61474 * 139.90839 * 20 17 16 41 41 H 1.09007 * 109.46967 * 83.07638 * 22 21 7 42 42 H 1.08997 * 109.47179 * 203.08204 * 22 21 7 43 43 H 1.08998 * 109.46510 * 323.08099 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 0.6999 2.5884 -1.0098 6 14 0.9517 2.8465 1.6656 7 6 3.6380 0.8429 0.0053 8 16 4.8356 2.1353 0.0132 9 8 4.2417 3.2284 0.7001 10 8 6.0636 1.5419 0.4116 11 7 5.0397 2.6242 -1.5557 12 6 3.9306 3.2537 -2.2770 13 6 4.4646 3.9374 -3.5372 14 6 3.3066 4.5953 -4.2901 15 1 2.4341 3.9474 -4.3745 16 6 2.9755 6.0128 -3.7942 17 6 2.7708 6.3950 -5.2715 18 1 1.7509 6.2402 -5.6238 19 8 3.2844 7.6851 -5.6086 20 6 3.7252 5.2412 -5.6215 21 6 3.9751 -0.4476 0.0043 22 6 5.3861 -0.9770 0.0087 23 16 2.5210 -1.4371 -0.0036 24 1 -0.3634 0.0079 -1.0277 25 1 -0.3633 -0.8940 0.5069 26 1 -0.3634 0.8860 0.5207 27 1 2.4998 3.2026 -0.2024 28 1 -0.0912 2.0610 -0.8332 29 1 0.2854 4.1735 1.6440 30 1 -0.0308 1.7906 2.0188 31 1 5.8934 2.4938 -1.9972 32 1 3.2015 2.4935 -2.5573 33 1 3.4542 3.9951 -1.6355 34 1 5.1937 4.6976 -3.2568 35 1 4.9411 3.1961 -4.1787 36 1 2.0644 6.0653 -3.1983 37 1 3.8190 6.5194 -3.3251 38 1 2.6887 8.4150 -5.3908 39 1 4.7740 5.5363 -5.6529 40 1 3.4183 4.6715 -6.4986 41 1 5.7660 -0.9904 1.0304 42 1 5.3957 -1.9890 -0.3959 43 1 6.0171 -0.3342 -0.6051 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17837620_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:28 Heat of formation + Delta-G solvation = -95.390719 kcal Electronic energy + Delta-G solvation = -28029.306538 eV Core-core repulsion = 24102.842526 eV Total energy + Delta-G solvation = -3926.464012 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51498 -40.34919 -38.62173 -37.38643 -37.16232 -37.02873 -35.68933 -34.09386 -31.07231 -30.97964 -28.09884 -26.68823 -25.98129 -25.31148 -23.22761 -22.64675 -20.98541 -20.49786 -20.08521 -19.11492 -18.53854 -18.22649 -18.13681 -17.29869 -17.15108 -16.39195 -16.30657 -15.83721 -15.72747 -15.59448 -15.38423 -15.32933 -14.68141 -14.50310 -14.38160 -14.16391 -14.10227 -13.66799 -13.52540 -13.47727 -13.37974 -13.30370 -13.20347 -13.02076 -12.83351 -12.69300 -12.63541 -12.40062 -12.39327 -11.90701 -11.70267 -11.57007 -11.37361 -11.14944 -10.93552 -10.66442 -10.54702 -9.99858 -9.40207 -4.95424 -0.79065 -0.44288 0.37829 0.69105 0.76541 1.27423 1.44878 1.81678 2.02848 2.61463 3.14950 3.29335 3.33021 3.45913 3.54225 3.66375 3.68474 3.81465 3.96260 3.99221 4.00955 4.04999 4.20155 4.21521 4.34383 4.44276 4.47971 4.58142 4.59917 4.64974 4.66570 4.78367 4.81158 4.83793 4.88397 4.94721 4.97818 5.08893 5.12130 5.20039 5.22351 5.30041 5.53238 6.00845 6.34196 6.87953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.199 4.199 3 C -0.072 4.072 4 C -0.086 4.086 5 O -0.531 6.531 6 Si 0.709 3.291 7 C -0.694 4.694 8 S 2.714 3.286 9 O -0.968 6.968 10 O -0.970 6.970 11 N -1.107 6.107 12 C 0.114 3.886 13 C -0.110 4.110 14 C -0.101 4.101 15 H 0.104 0.896 16 C -0.168 4.168 17 C 0.068 3.932 18 H 0.092 0.908 19 O -0.584 6.584 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.117 4.117 23 S 0.179 5.821 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.134 0.866 28 H 0.379 0.621 29 H -0.276 1.276 30 H -0.239 1.239 31 H 0.429 0.571 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.393 0.607 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -3.776 -1.969 4.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.317 4.317 3 C -0.082 4.082 4 C -0.197 4.197 5 O -0.340 6.340 6 Si 0.609 3.391 7 C -0.794 4.794 8 S 2.803 3.197 9 O -0.958 6.958 10 O -0.960 6.960 11 N -0.870 5.870 12 C -0.012 4.012 13 C -0.149 4.149 14 C -0.120 4.120 15 H 0.122 0.878 16 C -0.206 4.206 17 C 0.009 3.991 18 H 0.110 0.890 19 O -0.392 6.392 20 C -0.165 4.165 21 C -0.172 4.172 22 C -0.175 4.175 23 S 0.446 5.554 24 H 0.120 0.880 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.230 0.770 29 H -0.201 1.201 30 H -0.164 1.164 31 H 0.266 0.734 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.242 0.758 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.134 -4.810 -1.175 5.392 hybrid contribution -1.036 0.917 -0.919 1.661 sum -3.170 -3.893 -2.095 5.440 Atomic orbital electron populations 1.20804 0.86566 1.04323 1.04633 1.24492 1.01021 0.95356 1.10856 1.18508 0.90750 0.96693 1.02287 1.25235 0.95665 0.94741 1.04074 1.86610 1.29718 1.72266 1.45429 0.93284 0.83830 0.79064 0.82879 1.29378 1.11502 1.13643 1.24865 1.01134 0.72618 0.73146 0.72821 1.93492 1.78473 1.51986 1.71873 1.93581 1.43019 1.78387 1.81013 1.55302 1.22584 1.75827 1.33317 1.21517 0.87924 0.97110 0.94643 1.21693 0.97819 1.00433 0.94908 1.22245 0.98998 0.95424 0.95335 0.87755 1.23797 1.02571 0.96890 0.97323 1.23527 0.97722 0.82988 0.94822 0.88986 1.86483 1.49305 1.16874 1.86506 1.23128 1.00178 0.95251 0.97955 1.24822 1.01620 0.94950 0.95788 1.21044 0.87381 1.03210 1.05895 1.84282 0.94469 1.07635 1.69051 0.87986 0.89286 0.90437 0.84896 0.77022 1.20109 1.16368 0.73371 0.90743 0.90833 0.90809 0.89565 0.90815 0.89961 0.75773 0.89975 0.90164 0.87978 0.88336 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.42 8.47 71.24 0.60 1.03 16 2 C -0.20 -0.08 6.12 24.59 0.15 0.07 16 3 C -0.07 -0.19 4.27 -20.92 -0.09 -0.28 16 4 C -0.09 -0.28 2.17 71.24 0.15 -0.12 16 5 O -0.53 -0.89 12.82 -148.98 -1.91 -2.80 16 6 Si 0.71 2.32 30.67 68.60 2.10 4.43 16 7 C -0.69 -1.82 5.86 21.22 0.12 -1.70 16 8 S 2.71 9.08 5.35 -56.49 -0.30 8.77 16 9 O -0.97 -7.16 14.13 -128.00 -1.81 -8.97 16 10 O -0.97 -6.27 14.83 -128.00 -1.90 -8.17 16 11 N -1.11 2.03 6.00 -187.48 -1.12 0.91 16 12 C 0.11 -0.20 5.33 86.38 0.46 0.27 16 13 C -0.11 0.40 5.18 30.59 0.16 0.56 16 14 C -0.10 0.28 3.64 -10.27 -0.04 0.24 16 15 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 16 C -0.17 0.13 7.48 31.18 0.23 0.36 16 17 C 0.07 -0.01 5.21 31.18 0.16 0.15 16 18 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 19 O -0.58 -1.67 13.68 -148.98 -2.04 -3.70 16 20 C -0.13 0.11 7.47 31.12 0.23 0.35 16 21 C -0.05 -0.04 6.50 24.59 0.16 0.12 16 22 C -0.12 0.24 8.84 71.24 0.63 0.87 16 23 S 0.18 -0.17 23.31 -56.49 -1.32 -1.49 16 24 H 0.10 -0.74 7.86 -2.38 -0.02 -0.76 16 25 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 26 H 0.08 -0.29 3.58 -2.39 -0.01 -0.30 16 27 H 0.13 0.55 2.69 -2.38 -0.01 0.55 16 28 H 0.38 -1.31 5.35 -74.05 -0.40 -1.71 16 29 H -0.28 -2.29 7.11 99.48 0.71 -1.59 16 30 H -0.24 -0.52 5.84 99.48 0.58 0.06 16 31 H 0.43 -2.56 8.65 -96.75 -0.84 -3.40 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.07 0.02 6.39 -2.38 -0.02 0.00 16 34 H 0.07 -0.22 7.87 -2.39 -0.02 -0.23 16 35 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.08 0.09 7.92 -2.39 -0.02 0.07 16 38 H 0.39 -1.95 9.12 -74.06 -0.68 -2.62 16 39 H 0.08 0.08 8.10 -2.39 -0.02 0.07 16 40 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.10 -0.19 8.14 -2.38 -0.02 -0.21 16 42 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.10 -0.20 6.49 -2.39 -0.02 -0.21 16 Total: 0.00 -16.01 357.59 -6.27 -22.28 By element: Atomic # 1 Polarization: -12.23 SS G_CDS: -0.92 Total: -13.15 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 2.94 Total: 1.91 kcal Atomic # 7 Polarization: 2.03 SS G_CDS: -1.12 Total: 0.91 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -7.66 Total: -23.65 kcal Atomic # 14 Polarization: 2.32 SS G_CDS: 2.10 Total: 4.43 kcal Atomic # 16 Polarization: 8.90 SS G_CDS: -1.62 Total: 7.28 kcal Total: -16.01 -6.27 -22.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.112 kcal (2) G-P(sol) polarization free energy of solvation -16.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds