Wall clock time and date at job start Tue Mar 9 2021 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34779 * 1 3 3 O 1.21279 * 119.99730 * 2 1 4 4 C 1.50698 * 119.99820 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46833 * 180.02562 * 4 2 1 6 6 H 1.09002 * 109.47097 * 304.99997 * 5 4 2 7 7 C 1.53002 * 109.47454 * 65.00117 * 5 4 2 8 8 C 1.53001 * 109.46963 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 5 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 12 12 N 1.46497 * 109.47195 * 64.99866 * 11 9 8 13 13 S 1.65605 * 120.00229 * 164.99940 * 12 11 9 14 14 O 1.42096 * 106.40402 * 178.54519 * 13 12 11 15 15 O 1.42100 * 106.39858 * 311.46499 * 13 12 11 16 16 C 1.76198 * 107.21687 * 65.00297 * 13 12 11 17 17 C 1.33391 * 122.54075 * 269.71530 * 16 13 12 18 18 S 1.75881 * 109.59272 * 179.90857 * 17 16 13 19 19 C 1.75883 * 90.97256 * 0.29278 * 18 17 16 20 20 C 1.50698 * 125.20327 * 179.79195 * 19 18 17 21 21 O 1.42907 * 109.46904 * 120.04739 * 20 19 18 22 22 Si 1.86292 * 109.47376 * 0.05048 * 20 19 18 23 23 C 1.33389 * 109.59122 * 359.83554 * 19 18 17 24 24 C 1.53002 * 109.47233 * 60.00670 * 9 8 7 25 25 C 1.52997 * 109.46978 * 185.00195 * 5 4 2 26 26 H 0.96999 * 120.00240 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99693 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47173 * 60.00405 * 4 2 1 29 29 H 1.09000 * 109.47293 * 299.99610 * 4 2 1 30 30 H 1.09000 * 109.46497 * 300.00109 * 7 5 4 31 31 H 1.09002 * 109.47067 * 59.99861 * 7 5 4 32 32 H 1.09001 * 109.46652 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.47514 * 59.99933 * 8 7 5 34 34 H 1.09001 * 109.47630 * 185.00216 * 11 9 8 35 35 H 1.09004 * 109.47346 * 305.00346 * 11 9 8 36 36 H 0.96998 * 120.00342 * 345.00696 * 12 11 9 37 37 H 1.08000 * 125.20131 * 0.02562 * 17 16 13 38 38 H 1.09000 * 109.47628 * 240.04328 * 20 19 18 39 39 H 0.96692 * 114.00411 * 180.02562 * 21 20 19 40 40 H 1.48501 * 110.00193 * 59.99207 * 22 20 19 41 41 H 1.48500 * 110.00334 * 181.31543 * 22 20 19 42 42 H 1.08001 * 122.53883 * 179.97438 * 23 19 18 43 43 H 1.09002 * 109.47075 * 59.99068 * 24 9 8 44 44 H 1.08996 * 109.47407 * 180.02562 * 24 9 8 45 45 H 1.09001 * 109.47375 * 59.99908 * 25 5 4 46 46 H 1.09002 * 109.47497 * 299.99550 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0503 0.0000 4 6 2.1012 -1.3051 0.0006 5 6 3.6055 -1.0255 0.0011 6 1 3.8553 -0.3798 -0.8408 7 6 3.9951 -0.3327 1.3085 8 6 5.4992 -0.0525 1.3086 9 6 6.2637 -1.3719 1.1832 10 1 6.0142 -2.0178 2.0251 11 6 7.7678 -1.0919 1.1840 12 7 8.1608 -0.5381 2.4821 13 16 9.7598 -0.4843 2.9095 14 8 9.8124 0.1294 4.1901 15 8 10.2897 -1.7758 2.6443 16 6 10.5607 0.6207 1.7950 17 6 11.1065 0.2125 0.6483 18 16 11.8063 1.5885 -0.1945 19 6 11.3113 2.6713 1.1001 20 6 11.5666 4.1561 1.1362 21 8 10.3202 4.8523 1.1993 22 14 12.4853 4.6658 -0.4022 23 6 10.6762 1.9771 2.0456 24 6 5.8742 -2.0648 -0.1242 25 6 4.3695 -2.3451 -0.1241 26 1 -0.4850 -0.8400 0.0004 27 1 -0.4849 0.8401 -0.0004 28 1 1.8380 -1.8770 -0.8892 29 1 1.8380 -1.8763 0.8909 30 1 3.4507 0.6075 1.3975 31 1 3.7453 -0.9784 2.1503 32 1 5.7767 0.4415 2.2398 33 1 5.7486 0.5933 0.4668 34 1 8.3104 -2.0203 1.0057 35 1 8.0045 -0.3759 0.3969 36 1 7.4844 -0.2031 3.0913 37 1 11.1154 -0.8066 0.2911 38 1 12.1643 4.4009 2.0143 39 1 10.4082 5.8149 1.2249 40 1 11.6809 4.3374 -1.6065 41 1 12.7711 6.1225 -0.3640 42 1 10.2822 2.4383 2.9392 43 1 6.1235 -1.4189 -0.9660 44 1 6.4184 -3.0050 -0.2133 45 1 4.0920 -2.8387 -1.0555 46 1 4.1198 -2.9909 0.7178 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17846946_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:45 Heat of formation + Delta-G solvation = -127.787552 kcal Electronic energy + Delta-G solvation = -30171.895581 eV Core-core repulsion = 25894.837067 eV Total energy + Delta-G solvation = -4277.058514 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.98271 -39.55941 -39.37850 -38.14235 -37.67361 -36.76882 -36.46208 -34.65700 -33.20528 -31.95574 -31.67611 -29.07851 -27.19980 -25.54719 -24.80592 -23.74466 -22.32624 -21.24197 -21.08513 -20.75432 -20.05519 -18.99325 -18.58993 -18.41803 -18.28560 -17.71655 -17.61019 -17.15518 -16.57600 -16.23756 -15.98708 -15.75642 -15.54678 -15.25067 -15.23615 -14.85550 -14.44767 -14.32321 -14.26190 -14.12744 -14.04075 -13.94322 -13.58937 -13.20049 -13.04884 -12.96642 -12.94737 -12.85132 -12.69282 -12.57357 -12.40868 -12.40375 -12.04314 -11.89090 -11.58923 -11.45051 -11.31062 -11.08223 -10.73486 -10.71758 -10.55465 -10.49611 -10.13360 -9.77182 -5.18445 -0.66544 -0.41081 0.32919 0.61709 1.03639 1.16167 1.46003 1.68104 1.79316 2.12326 2.54752 2.80598 3.13568 3.38002 3.53256 3.67184 3.69011 3.72231 3.85715 3.87202 3.94777 4.03842 4.19157 4.22610 4.33089 4.37341 4.42633 4.45333 4.53067 4.57851 4.58653 4.62763 4.71306 4.72727 4.87117 4.96451 4.96641 5.09578 5.13208 5.15477 5.20009 5.27327 5.32296 5.51634 5.56419 5.80407 5.93641 6.28230 6.33034 7.29890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.514 3.486 3 O -0.538 6.538 4 C -0.141 4.141 5 C -0.073 4.073 6 H 0.079 0.921 7 C -0.121 4.121 8 C -0.114 4.114 9 C -0.094 4.094 10 H 0.082 0.918 11 C 0.118 3.882 12 N -1.114 6.114 13 S 2.711 3.289 14 O -0.953 6.953 15 O -0.953 6.953 16 C -0.684 4.684 17 C -0.089 4.089 18 S 0.166 5.834 19 C -0.183 4.183 20 C -0.036 4.036 21 O -0.531 6.531 22 Si 0.649 3.351 23 C -0.042 4.042 24 C -0.113 4.113 25 C -0.114 4.114 26 H 0.401 0.599 27 H 0.401 0.599 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.420 0.580 37 H 0.187 0.813 38 H 0.089 0.911 39 H 0.384 0.616 40 H -0.235 1.235 41 H -0.237 1.237 42 H 0.156 0.844 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -1.993 -3.586 4.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.300 3.700 3 O -0.415 6.415 4 C -0.181 4.181 5 C -0.092 4.092 6 H 0.097 0.903 7 C -0.158 4.158 8 C -0.151 4.151 9 C -0.114 4.114 10 H 0.100 0.900 11 C -0.008 4.008 12 N -0.875 5.875 13 S 2.797 3.203 14 O -0.943 6.943 15 O -0.943 6.943 16 C -0.784 4.784 17 C -0.228 4.228 18 S 0.429 5.571 19 C -0.301 4.301 20 C -0.148 4.148 21 O -0.339 6.339 22 Si 0.547 3.453 23 C -0.071 4.071 24 C -0.151 4.151 25 C -0.152 4.152 26 H 0.229 0.771 27 H 0.232 0.768 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.256 0.744 37 H 0.204 0.796 38 H 0.107 0.893 39 H 0.233 0.767 40 H -0.159 1.159 41 H -0.160 1.160 42 H 0.173 0.827 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.833 -1.814 -5.171 5.543 hybrid contribution -2.286 1.262 1.383 2.955 sum -3.120 -0.552 -3.787 4.938 Atomic orbital electron populations 1.43975 1.07480 1.12584 1.78300 1.20787 0.82540 0.91874 0.74833 1.90740 1.67938 1.33891 1.48913 1.21784 0.96513 0.95233 1.04547 1.20950 0.91564 0.96939 0.99722 0.90257 1.21717 0.95961 1.01792 0.96338 1.21578 0.95005 0.96325 1.02215 1.21396 0.92703 0.97933 0.99356 0.90006 1.21440 0.97103 0.98753 0.83526 1.55516 1.25697 1.78105 1.28195 1.01525 0.72280 0.73541 0.72906 1.93609 1.85765 1.77996 1.36935 1.93602 1.78157 1.36970 1.85595 1.30020 1.21646 1.11425 1.15293 1.25914 0.97089 1.03835 0.95945 1.84308 1.54368 0.97448 1.20942 1.23769 1.09263 0.98036 0.98982 1.24037 0.91121 0.88861 1.10752 1.86599 1.27966 1.23204 1.96139 0.95309 0.86554 0.86267 0.77194 1.19565 0.97348 0.90177 1.00021 1.21530 0.96091 1.00635 0.96885 1.21594 0.94734 0.96693 1.02140 0.77051 0.76846 0.88722 0.88725 0.89940 0.92476 0.91919 0.91531 0.89941 0.91604 0.74404 0.79629 0.89294 0.76731 1.15901 1.15988 0.82685 0.91452 0.91282 0.91630 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 2.23 8.87 31.22 0.28 2.51 16 2 C 0.51 0.20 7.82 -10.99 -0.09 0.11 16 3 O -0.54 -2.59 14.80 5.56 0.08 -2.50 16 4 C -0.14 0.32 5.17 -27.88 -0.14 0.17 16 5 C -0.07 0.07 1.84 -90.62 -0.17 -0.10 16 6 H 0.08 0.06 7.96 -51.93 -0.41 -0.35 16 7 C -0.12 0.00 4.94 -26.73 -0.13 -0.13 16 8 C -0.11 0.07 5.08 -26.73 -0.14 -0.07 16 9 C -0.09 0.16 2.29 -90.62 -0.21 -0.05 16 10 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 11 C 0.12 -0.17 5.61 -4.04 -0.02 -0.19 16 12 N -1.11 0.63 5.88 -10.61 -0.06 0.56 16 13 S 2.71 5.27 5.80 -107.50 -0.62 4.64 16 14 O -0.95 -4.78 17.63 -57.17 -1.01 -5.79 16 15 O -0.95 -4.00 17.11 -57.17 -0.98 -4.98 16 16 C -0.68 -0.97 5.86 -41.21 -0.24 -1.22 16 17 C -0.09 -0.01 10.70 29.04 0.31 0.30 16 18 S 0.17 -0.01 20.58 -107.50 -2.21 -2.22 16 19 C -0.18 -0.26 5.75 -36.00 -0.21 -0.47 16 20 C -0.04 0.00 2.95 36.00 0.11 0.11 16 21 O -0.53 -0.51 12.83 -35.23 -0.45 -0.96 16 22 Si 0.65 -0.59 30.97 -169.99 -5.26 -5.86 16 23 C -0.04 -0.09 9.56 -41.21 -0.39 -0.48 16 24 C -0.11 0.25 5.21 -26.70 -0.14 0.11 16 25 C -0.11 0.27 5.21 -26.70 -0.14 0.13 16 26 H 0.40 -2.22 8.83 -40.82 -0.36 -2.58 16 27 H 0.40 -1.09 8.93 -40.82 -0.36 -1.45 16 28 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 29 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.08 0.21 5.95 -51.93 -0.31 -0.10 16 31 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.05 6.90 -51.93 -0.36 -0.41 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.08 -0.15 7.75 -51.93 -0.40 -0.55 16 35 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.42 -0.70 7.41 -34.47 -0.26 -0.96 16 37 H 0.19 -0.42 8.00 -52.49 -0.42 -0.84 16 38 H 0.09 -0.16 7.96 -51.93 -0.41 -0.57 16 39 H 0.38 -1.22 8.74 45.56 0.40 -0.82 16 40 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 41 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 42 H 0.16 0.30 7.96 -52.49 -0.42 -0.11 16 43 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 44 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 45 H 0.06 -0.18 8.14 -51.93 -0.42 -0.61 16 46 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 394.50 15.07 5.94 5.94 Total: 0.00 -12.18 394.50 -12.64 -24.82 By element: Atomic # 1 Polarization: -7.65 SS G_CDS: -6.74 Total: -14.39 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.60 Total: -1.78 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: 0.21 Total: 3.08 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -2.36 Total: -14.24 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.26 Total: -5.86 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -2.84 Total: 2.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -12.18 -12.64 -24.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17846946_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.968 kcal (2) G-P(sol) polarization free energy of solvation -12.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds