Wall clock time and date at job start Tue Mar 9 2021 13:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.46938 * 2 1 4 4 C 1.50698 * 109.47463 * 120.00240 * 2 1 3 5 5 C 1.33386 * 125.20115 * 64.99590 * 4 2 1 6 6 C 1.38429 * 114.92198 * 179.97438 * 5 4 2 7 7 S 1.76197 * 122.54249 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39925 * 336.45810 * 7 6 5 9 9 O 1.42103 * 106.39966 * 203.53925 * 7 6 5 10 10 N 1.65597 * 107.21750 * 89.99905 * 7 6 5 11 11 C 1.46506 * 120.00079 * 65.00357 * 10 7 6 12 12 H 1.08999 * 109.46864 * 24.71745 * 11 10 7 13 13 C 1.52999 * 109.47265 * 144.72351 * 11 10 7 14 14 C 1.52996 * 109.46888 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47366 * 299.99914 * 14 13 11 16 16 H 1.09006 * 109.46903 * 300.00448 * 15 14 13 17 17 O 1.42895 * 109.47174 * 180.02562 * 15 14 13 18 18 C 1.42908 * 113.99717 * 149.99991 * 17 15 14 19 19 F 1.39890 * 109.47395 * 59.99984 * 18 17 15 20 20 F 1.39904 * 109.46782 * 179.97438 * 18 17 15 21 21 F 1.39898 * 109.47127 * 299.99274 * 18 17 15 22 22 C 1.52992 * 109.47187 * 59.99979 * 15 14 13 23 23 C 1.52995 * 109.46824 * 264.72374 * 11 10 7 24 24 C 1.33388 * 114.91577 * 0.25041 * 6 5 4 25 25 S 1.75882 * 125.20219 * 244.95870 * 4 2 1 26 26 H 0.96706 * 113.99571 * 299.99316 * 1 2 3 27 27 H 1.08996 * 109.46613 * 240.00328 * 2 1 3 28 28 H 1.48505 * 109.99759 * 178.68203 * 3 2 1 29 29 H 1.48501 * 110.00023 * 300.00149 * 3 2 1 30 30 H 1.07999 * 122.54430 * 359.97438 * 5 4 2 31 31 H 0.97005 * 120.00050 * 244.72378 * 10 7 6 32 32 H 1.09007 * 109.46839 * 299.99759 * 13 11 10 33 33 H 1.08994 * 109.47161 * 59.99396 * 13 11 10 34 34 H 1.09006 * 109.47475 * 60.00012 * 14 13 11 35 35 H 1.09002 * 109.47071 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47437 * 60.00277 * 22 15 14 37 37 H 1.09002 * 109.47668 * 180.02562 * 22 15 14 38 38 H 1.09003 * 109.47335 * 299.99547 * 23 11 10 39 39 H 1.09002 * 109.47311 * 59.99668 * 23 11 10 40 40 H 1.08006 * 125.20247 * 179.75348 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7534 -2.0052 1.4973 6 6 2.3064 -2.4361 2.6909 7 16 2.1902 -4.1060 3.2410 8 8 1.0539 -4.6631 2.5948 9 8 2.3437 -4.0747 4.6534 10 7 3.5088 -4.9113 2.6451 11 6 4.8548 -4.5456 3.0935 12 1 4.7961 -4.0812 4.0779 13 6 5.7247 -5.8017 3.1731 14 6 7.1304 -5.4197 3.6408 15 6 7.7481 -4.4337 2.6473 16 1 7.8064 -4.8984 1.6629 17 8 9.0613 -4.0774 3.0838 18 6 9.9606 -3.7579 2.0202 19 9 9.4581 -2.6725 1.2947 20 9 11.2112 -3.4244 2.5513 21 9 10.0930 -4.8637 1.1735 22 6 6.8783 -3.1777 2.5676 23 6 5.4728 -3.5594 2.1004 24 6 2.9290 -1.4901 3.3957 25 16 2.8430 0.0406 2.5337 26 1 -0.3933 0.4417 0.7652 27 1 1.7922 -0.5138 -0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5614 2.4679 -1.2085 30 1 1.2184 -2.6672 0.8325 31 1 3.3898 -5.6278 2.0022 32 1 5.2843 -6.5044 3.8807 33 1 5.7832 -6.2661 2.1888 34 1 7.0722 -4.9551 4.6252 35 1 7.7500 -6.3147 3.6980 36 1 6.8200 -2.7130 3.5519 37 1 7.3181 -2.4754 1.8595 38 1 5.5314 -4.0237 1.1160 39 1 4.8530 -2.6645 2.0437 40 1 3.4137 -1.6415 4.3489 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17849240_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:06 Heat of formation + Delta-G solvation = -280.195885 kcal Electronic energy + Delta-G solvation = -32923.344372 eV Core-core repulsion = 27736.042298 eV Total energy + Delta-G solvation = -5187.302073 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -51.24522 -48.97672 -48.94224 -40.85448 -39.58476 -38.64749 -38.18221 -37.62458 -36.92002 -34.87567 -32.29884 -31.87722 -29.70737 -27.30184 -26.33883 -25.02835 -24.15012 -23.66303 -21.77286 -21.44683 -20.49459 -20.27939 -19.96817 -19.72137 -19.25643 -18.60347 -18.02722 -17.82156 -17.57615 -16.80274 -16.42102 -16.21884 -15.96968 -15.78654 -15.69560 -15.59999 -15.51446 -15.34707 -15.17959 -15.09709 -15.04627 -14.93730 -14.65516 -14.40698 -14.26842 -14.09228 -14.01098 -13.68717 -13.54319 -13.32965 -13.20564 -13.11211 -12.95155 -12.63723 -12.56871 -12.50969 -12.30397 -12.25839 -11.92330 -11.69677 -11.49658 -10.81713 -10.67213 -10.27503 -9.95326 -5.31845 -0.83448 -0.57504 0.22268 0.49099 0.76205 0.91032 1.06452 1.43329 1.75276 1.88293 2.00045 2.64702 2.92031 3.00310 3.14045 3.22738 3.26674 3.32106 3.51971 3.56193 3.59408 3.67708 3.72474 3.78386 3.92362 4.00764 4.10795 4.15239 4.26269 4.33034 4.42979 4.51094 4.55927 4.71461 4.76207 4.78755 4.81952 4.91705 4.97608 4.99493 5.16738 5.73577 6.34942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.655 3.345 4 C -0.229 4.229 5 C -0.041 4.041 6 C -0.686 4.686 7 S 2.708 3.292 8 O -0.949 6.949 9 O -0.951 6.951 10 N -1.110 6.110 11 C 0.144 3.856 12 H 0.099 0.901 13 C -0.119 4.119 14 C -0.113 4.113 15 C 0.082 3.918 16 H 0.085 0.915 17 O -0.366 6.366 18 C 0.594 3.406 19 F -0.175 7.175 20 F -0.141 7.141 21 F -0.175 7.175 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.087 4.087 25 S 0.160 5.840 26 H 0.382 0.618 27 H 0.126 0.874 28 H -0.238 1.238 29 H -0.231 1.231 30 H 0.157 0.843 31 H 0.422 0.578 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 1.815 0.244 2.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.140 4.140 3 Si 0.554 3.446 4 C -0.346 4.346 5 C -0.070 4.070 6 C -0.786 4.786 7 S 2.794 3.206 8 O -0.939 6.939 9 O -0.941 6.941 10 N -0.869 5.869 11 C 0.037 3.963 12 H 0.117 0.883 13 C -0.158 4.158 14 C -0.151 4.151 15 C 0.027 3.973 16 H 0.103 0.897 17 O -0.290 6.290 18 C 0.502 3.498 19 F -0.157 7.157 20 F -0.123 7.123 21 F -0.157 7.157 22 C -0.185 4.185 23 C -0.179 4.179 24 C -0.226 4.226 25 S 0.424 5.576 26 H 0.230 0.770 27 H 0.143 0.857 28 H -0.162 1.162 29 H -0.154 1.154 30 H 0.174 0.826 31 H 0.257 0.743 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.984 3.427 0.324 3.973 hybrid contribution 0.034 -1.536 -1.360 2.052 sum 2.019 1.891 -1.036 2.953 Atomic orbital electron populations 1.86554 1.16359 1.81675 1.49168 1.24445 0.85429 1.09129 0.94999 0.95059 0.82046 0.77419 0.90032 1.25076 1.08778 0.98334 1.02442 1.19593 0.97541 0.95169 0.94658 1.30035 1.15480 1.25984 1.07053 1.01659 0.72333 0.72838 0.73738 1.93627 1.47036 1.76658 1.76618 1.93617 1.85830 1.86555 1.28082 1.55611 1.20045 1.49936 1.61357 1.20977 0.81167 0.96073 0.98094 0.88315 1.21774 0.93460 0.97045 1.03539 1.21596 0.95507 0.98889 0.99144 1.22657 0.78316 0.96392 0.99978 0.89727 1.88370 1.23465 1.87124 1.30003 1.19578 0.78664 0.74760 0.76792 1.93258 1.87252 1.56400 1.78826 1.93292 1.39938 1.92225 1.86801 1.93266 1.95758 1.54348 1.72361 1.22179 0.94993 0.97266 1.04097 1.22105 0.95504 1.00108 1.00175 1.25926 0.98515 0.95887 1.02290 1.84388 1.50397 1.10855 1.11910 0.77044 0.85708 1.16189 1.15383 0.82581 0.74310 0.89262 0.90404 0.89609 0.89621 0.89764 0.89905 0.90333 0.90441 0.79728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.27 12.88 -35.23 -0.45 -0.18 16 2 C -0.03 0.03 2.96 36.00 0.11 0.14 16 3 Si 0.66 -1.28 30.98 -169.99 -5.27 -6.54 16 4 C -0.23 0.24 5.70 -36.00 -0.21 0.04 16 5 C -0.04 0.01 9.59 -41.21 -0.40 -0.38 16 6 C -0.69 0.50 5.01 -41.21 -0.21 0.29 16 7 S 2.71 0.54 5.78 -107.50 -0.62 -0.08 16 8 O -0.95 -3.37 17.63 -57.17 -1.01 -4.38 16 9 O -0.95 -2.60 16.97 -57.17 -0.97 -3.57 16 10 N -1.11 3.30 5.47 -4.89 -0.03 3.28 16 11 C 0.14 -0.52 2.79 -67.93 -0.19 -0.71 16 12 H 0.10 -0.36 7.50 -51.93 -0.39 -0.75 16 13 C -0.12 0.51 5.45 -26.73 -0.15 0.37 16 14 C -0.11 0.41 5.57 -26.73 -0.15 0.26 16 15 C 0.08 -0.21 2.40 -26.74 -0.06 -0.27 16 16 H 0.08 -0.26 7.20 -51.93 -0.37 -0.64 16 17 O -0.37 0.13 10.24 -35.23 -0.36 -0.23 16 18 C 0.59 0.12 3.71 101.05 0.37 0.49 16 19 F -0.18 -0.03 15.44 2.25 0.03 0.01 16 20 F -0.14 -0.18 17.53 2.25 0.04 -0.15 16 21 F -0.18 -0.07 16.61 2.25 0.04 -0.03 16 22 C -0.15 0.47 5.39 -26.76 -0.14 0.32 16 23 C -0.14 0.53 5.52 -26.76 -0.15 0.39 16 24 C -0.09 0.17 9.79 29.04 0.28 0.45 16 25 S 0.16 -0.36 20.60 -107.50 -2.21 -2.57 16 26 H 0.38 -1.61 8.70 45.56 0.40 -1.21 16 27 H 0.13 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H -0.24 0.02 7.11 56.52 0.40 0.42 16 29 H -0.23 -0.20 7.11 56.52 0.40 0.20 16 30 H 0.16 -0.03 7.96 -52.49 -0.42 -0.45 16 31 H 0.42 -1.96 8.84 -34.47 -0.30 -2.26 16 32 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 33 H 0.08 -0.40 8.14 -51.93 -0.42 -0.82 16 34 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 35 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 36 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 37 H 0.08 -0.21 6.50 -51.93 -0.34 -0.55 16 38 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 39 H 0.08 -0.29 6.24 -51.93 -0.32 -0.61 16 40 H 0.19 -0.72 8.00 -52.48 -0.42 -1.14 16 LS Contribution 365.99 15.07 5.52 5.52 Total: 0.00 -9.20 365.99 -10.49 -19.69 By element: Atomic # 1 Polarization: -7.82 SS G_CDS: -4.32 Total: -12.14 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.88 Total: 1.39 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -0.03 Total: 3.28 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -2.79 Total: -8.37 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.11 Total: -0.16 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.27 Total: -6.54 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.84 Total: -2.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -9.20 -10.49 -19.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849240_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.503 kcal (2) G-P(sol) polarization free energy of solvation -9.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds