Wall clock time and date at job start Tue Mar 9 2021 13:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.46938 * 2 1 4 4 C 1.50698 * 109.47463 * 120.00240 * 2 1 3 5 5 C 1.33386 * 125.20115 * 64.99590 * 4 2 1 6 6 C 1.38429 * 114.92198 * 179.97438 * 5 4 2 7 7 S 1.76197 * 122.54249 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.39925 * 336.45810 * 7 6 5 9 9 O 1.42103 * 106.39966 * 203.53925 * 7 6 5 10 10 N 1.65597 * 107.21750 * 89.99905 * 7 6 5 11 11 C 1.46506 * 120.00079 * 65.00357 * 10 7 6 12 12 H 1.08999 * 109.46864 * 24.71745 * 11 10 7 13 13 C 1.52999 * 109.47265 * 144.72351 * 11 10 7 14 14 C 1.52996 * 109.46888 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47366 * 299.99914 * 14 13 11 16 16 H 1.09006 * 109.46903 * 300.00448 * 15 14 13 17 17 O 1.42895 * 109.47174 * 180.02562 * 15 14 13 18 18 C 1.42908 * 113.99717 * 149.99991 * 17 15 14 19 19 F 1.39890 * 109.47395 * 59.99984 * 18 17 15 20 20 F 1.39904 * 109.46782 * 179.97438 * 18 17 15 21 21 F 1.39898 * 109.47127 * 299.99274 * 18 17 15 22 22 C 1.52992 * 109.47187 * 59.99979 * 15 14 13 23 23 C 1.52995 * 109.46824 * 264.72374 * 11 10 7 24 24 C 1.33388 * 114.91577 * 0.25041 * 6 5 4 25 25 S 1.75882 * 125.20219 * 244.95870 * 4 2 1 26 26 H 0.96706 * 113.99571 * 299.99316 * 1 2 3 27 27 H 1.08996 * 109.46613 * 240.00328 * 2 1 3 28 28 H 1.48505 * 109.99759 * 178.68203 * 3 2 1 29 29 H 1.48501 * 110.00023 * 300.00149 * 3 2 1 30 30 H 1.07999 * 122.54430 * 359.97438 * 5 4 2 31 31 H 0.97005 * 120.00050 * 244.72378 * 10 7 6 32 32 H 1.09007 * 109.46839 * 299.99759 * 13 11 10 33 33 H 1.08994 * 109.47161 * 59.99396 * 13 11 10 34 34 H 1.09006 * 109.47475 * 60.00012 * 14 13 11 35 35 H 1.09002 * 109.47071 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.47437 * 60.00277 * 22 15 14 37 37 H 1.09002 * 109.47668 * 180.02562 * 22 15 14 38 38 H 1.09003 * 109.47335 * 299.99547 * 23 11 10 39 39 H 1.09002 * 109.47311 * 59.99668 * 23 11 10 40 40 H 1.08006 * 125.20247 * 179.75348 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7534 -2.0052 1.4973 6 6 2.3064 -2.4361 2.6909 7 16 2.1902 -4.1060 3.2410 8 8 1.0539 -4.6631 2.5948 9 8 2.3437 -4.0747 4.6534 10 7 3.5088 -4.9113 2.6451 11 6 4.8548 -4.5456 3.0935 12 1 4.7961 -4.0812 4.0779 13 6 5.7247 -5.8017 3.1731 14 6 7.1304 -5.4197 3.6408 15 6 7.7481 -4.4337 2.6473 16 1 7.8064 -4.8984 1.6629 17 8 9.0613 -4.0774 3.0838 18 6 9.9606 -3.7579 2.0202 19 9 9.4581 -2.6725 1.2947 20 9 11.2112 -3.4244 2.5513 21 9 10.0930 -4.8637 1.1735 22 6 6.8783 -3.1777 2.5676 23 6 5.4728 -3.5594 2.1004 24 6 2.9290 -1.4901 3.3957 25 16 2.8430 0.0406 2.5337 26 1 -0.3933 0.4417 0.7652 27 1 1.7922 -0.5138 -0.8900 28 1 3.5346 1.7703 0.0321 29 1 1.5614 2.4679 -1.2085 30 1 1.2184 -2.6672 0.8325 31 1 3.3898 -5.6278 2.0022 32 1 5.2843 -6.5044 3.8807 33 1 5.7832 -6.2661 2.1888 34 1 7.0722 -4.9551 4.6252 35 1 7.7500 -6.3147 3.6980 36 1 6.8200 -2.7130 3.5519 37 1 7.3181 -2.4754 1.8595 38 1 5.5314 -4.0237 1.1160 39 1 4.8530 -2.6645 2.0437 40 1 3.4137 -1.6415 4.3489 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17849240_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:05 Heat of formation + Delta-G solvation = -282.670186 kcal Electronic energy + Delta-G solvation = -32923.451665 eV Core-core repulsion = 27736.042298 eV Total energy + Delta-G solvation = -5187.409367 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.25992 -49.01363 -48.94619 -40.64419 -39.48912 -38.59007 -38.20569 -37.53621 -37.04525 -34.69538 -32.04367 -31.73730 -29.50238 -27.19878 -26.30255 -24.94041 -23.86836 -23.46154 -21.57282 -21.32702 -20.43533 -20.21879 -19.96907 -19.68677 -19.14307 -18.57011 -17.93174 -17.70296 -17.47336 -16.70187 -16.32596 -16.10818 -15.96711 -15.73714 -15.61857 -15.47904 -15.41614 -15.37035 -15.15059 -15.10605 -14.94561 -14.82838 -14.47011 -14.31805 -14.17536 -13.96036 -13.92802 -13.59066 -13.37585 -13.27232 -13.26443 -13.10630 -12.92069 -12.55859 -12.44145 -12.23154 -12.18913 -12.06117 -11.72538 -11.55116 -11.26101 -10.68974 -10.48434 -10.15699 -9.81848 -5.19249 -0.79699 -0.47273 0.35062 0.60219 0.81320 0.97459 1.17841 1.53001 1.83885 1.96750 2.06528 2.66510 2.94632 3.04379 3.20665 3.41638 3.49061 3.53424 3.65512 3.80778 3.84105 3.90955 3.92716 4.05411 4.16696 4.23714 4.32168 4.37476 4.42613 4.57136 4.65999 4.72016 4.77379 4.91847 4.99767 5.04661 5.07960 5.10363 5.20927 5.24969 5.42452 6.01926 6.62968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.032 4.032 3 Si 0.728 3.272 4 C -0.235 4.235 5 C -0.053 4.053 6 C -0.691 4.691 7 S 2.723 3.277 8 O -0.988 6.988 9 O -0.979 6.979 10 N -1.099 6.099 11 C 0.140 3.860 12 H 0.101 0.899 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.075 3.925 16 H 0.091 0.909 17 O -0.373 6.373 18 C 0.595 3.405 19 F -0.175 7.175 20 F -0.150 7.150 21 F -0.177 7.177 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.087 4.087 25 S 0.193 5.807 26 H 0.397 0.603 27 H 0.123 0.877 28 H -0.259 1.259 29 H -0.272 1.272 30 H 0.149 0.851 31 H 0.430 0.570 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 2.103 0.615 2.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.145 4.145 3 Si 0.630 3.370 4 C -0.353 4.353 5 C -0.082 4.082 6 C -0.793 4.793 7 S 2.812 3.188 8 O -0.978 6.978 9 O -0.969 6.969 10 N -0.861 5.861 11 C 0.033 3.967 12 H 0.119 0.881 13 C -0.155 4.155 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.109 0.891 17 O -0.297 6.297 18 C 0.503 3.497 19 F -0.158 7.158 20 F -0.132 7.132 21 F -0.159 7.159 22 C -0.183 4.183 23 C -0.176 4.176 24 C -0.226 4.226 25 S 0.457 5.543 26 H 0.247 0.753 27 H 0.140 0.860 28 H -0.184 1.184 29 H -0.197 1.197 30 H 0.166 0.834 31 H 0.268 0.732 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.386 3.682 0.716 4.446 hybrid contribution -0.070 -1.581 -1.513 2.190 sum 2.316 2.101 -0.797 3.227 Atomic orbital electron populations 1.86515 1.16797 1.82132 1.50362 1.24582 0.85243 1.09702 0.94976 0.94204 0.79540 0.75191 0.88018 1.25150 1.08935 0.98290 1.02926 1.19610 0.98093 0.95549 0.94966 1.29776 1.16660 1.25481 1.07334 1.00850 0.72080 0.72947 0.72917 1.93572 1.49384 1.77749 1.77132 1.93577 1.86300 1.87110 1.29888 1.55319 1.19513 1.49818 1.61419 1.21115 0.80615 0.96645 0.98322 0.88092 1.21768 0.92748 0.96687 1.04312 1.21591 0.95716 0.98658 0.98867 1.22891 0.77537 0.96987 1.00626 0.89148 1.88377 1.24233 1.87179 1.29897 1.19570 0.78519 0.74697 0.76866 1.93255 1.87207 1.56433 1.78869 1.93269 1.40650 1.92311 1.86925 1.93259 1.95775 1.54425 1.72455 1.22155 0.95069 0.96897 1.04206 1.22080 0.95031 1.00114 1.00350 1.26243 0.97729 0.95831 1.02778 1.84282 1.49325 1.09961 1.10723 0.75322 0.85966 1.18411 1.19734 0.83354 0.73231 0.88981 0.89273 0.89618 0.89436 0.89386 0.90459 0.89755 0.90360 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.44 12.88 -148.98 -1.92 -1.48 16 2 C -0.03 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.73 -2.87 30.98 68.60 2.13 -0.75 16 4 C -0.24 0.54 5.70 24.59 0.14 0.68 16 5 C -0.05 0.01 9.59 21.22 0.20 0.21 16 6 C -0.69 0.98 5.01 21.22 0.11 1.08 16 7 S 2.72 2.60 5.78 -56.49 -0.33 2.27 16 8 O -0.99 -8.26 17.63 -128.00 -2.26 -10.52 16 9 O -0.98 -5.73 16.97 -128.00 -2.17 -7.90 16 10 N -1.10 6.64 5.47 -169.39 -0.93 5.71 16 11 C 0.14 -1.09 2.79 44.99 0.13 -0.97 16 12 H 0.10 -0.81 7.50 -2.39 -0.02 -0.83 16 13 C -0.12 1.10 5.45 30.59 0.17 1.27 16 14 C -0.11 0.87 5.57 30.59 0.17 1.04 16 15 C 0.07 -0.42 2.40 30.59 0.07 -0.34 16 16 H 0.09 -0.62 7.20 -2.38 -0.02 -0.63 16 17 O -0.37 0.31 10.24 -148.98 -1.53 -1.21 16 18 C 0.60 0.28 3.71 113.37 0.42 0.70 16 19 F -0.18 -0.05 15.44 44.97 0.69 0.64 16 20 F -0.15 -0.44 17.53 44.97 0.79 0.35 16 21 F -0.18 -0.13 16.61 44.97 0.75 0.61 16 22 C -0.14 1.00 5.39 30.58 0.16 1.17 16 23 C -0.14 1.14 5.52 30.58 0.17 1.31 16 24 C -0.09 0.40 9.79 66.72 0.65 1.05 16 25 S 0.19 -1.06 20.60 -56.49 -1.16 -2.22 16 26 H 0.40 -3.39 8.70 -74.05 -0.64 -4.04 16 27 H 0.12 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H -0.26 0.13 7.11 99.48 0.71 0.84 16 29 H -0.27 -0.76 7.11 99.48 0.71 -0.05 16 30 H 0.15 0.14 7.96 -2.91 -0.02 0.11 16 31 H 0.43 -4.05 8.84 -96.74 -0.85 -4.90 16 32 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 33 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.09 -0.66 8.14 -2.38 -0.02 -0.68 16 35 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.08 -0.42 6.50 -2.39 -0.02 -0.44 16 38 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 39 H 0.08 -0.64 6.24 -2.39 -0.01 -0.66 16 40 H 0.20 -1.83 8.00 -2.91 -0.02 -1.86 16 Total: 0.00 -20.92 365.99 -3.66 -24.58 By element: Atomic # 1 Polarization: -17.24 SS G_CDS: -0.33 Total: -17.58 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 2.60 Total: 7.49 kcal Atomic # 7 Polarization: 6.64 SS G_CDS: -0.93 Total: 5.71 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -7.87 Total: -21.11 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 2.23 Total: 1.60 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.13 Total: -0.75 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.49 Total: 0.05 kcal Total: -20.92 -3.66 -24.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849240_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -258.086 kcal (2) G-P(sol) polarization free energy of solvation -20.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds