Wall clock time and date at job start Tue Mar 9 2021 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33864 * 124.19364 * 2 1 4 4 O 1.21536 * 123.79097 * 0.02562 * 3 2 1 5 5 N 1.34683 * 112.42138 * 180.02562 * 3 2 1 6 6 C 1.46853 * 106.41643 * 0.02562 * 5 3 2 7 7 C 1.52468 * 110.49116 * 241.44109 * 6 5 3 8 8 C 1.53093 * 109.52785 * 295.99395 * 7 6 5 9 9 C 1.53000 * 109.41706 * 300.84151 * 8 7 6 10 10 N 1.46495 * 109.45381 * 180.42821 * 9 8 7 11 11 S 1.65606 * 120.00036 * 97.33891 * 10 9 8 12 12 O 1.42101 * 106.40301 * 180.43756 * 11 10 9 13 13 O 1.42097 * 106.39999 * 313.36070 * 11 10 9 14 14 C 1.76205 * 107.21560 * 66.89904 * 11 10 9 15 15 C 1.33391 * 122.53510 * 166.13405 * 14 11 10 16 16 C 1.50698 * 125.20572 * 359.97438 * 15 14 11 17 17 O 1.42902 * 109.46927 * 39.65403 * 16 15 14 18 18 Si 1.86305 * 109.46948 * 159.64830 * 16 15 14 19 19 S 1.75882 * 109.59006 * 180.02562 * 15 14 11 20 20 C 1.75882 * 90.97346 * 359.97438 * 19 15 14 21 21 C 1.33388 * 109.59225 * 359.73426 * 20 19 15 22 22 C 1.53004 * 109.56738 * 60.39938 * 9 8 7 23 23 C 1.52481 * 110.48817 * 118.55092 * 6 5 3 24 24 C 1.34921 * 124.19451 * 180.02562 * 2 1 3 25 25 O 1.21237 * 127.25382 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46854 * 359.97213 * 1 2 3 27 27 H 1.08999 * 109.46924 * 119.97406 * 1 2 3 28 28 H 1.08997 * 109.46848 * 239.97448 * 1 2 3 29 29 H 0.96999 * 126.79336 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46612 * 56.01343 * 7 6 5 31 31 H 1.09004 * 109.45972 * 175.97468 * 7 6 5 32 32 H 1.08998 * 109.47804 * 180.85250 * 8 7 6 33 33 H 1.08996 * 109.47591 * 60.82021 * 8 7 6 34 34 H 1.08998 * 109.43968 * 300.37839 * 9 8 7 35 35 H 0.96998 * 120.00722 * 277.33794 * 10 9 8 36 36 H 1.08995 * 109.47379 * 279.65195 * 16 15 14 37 37 H 0.96697 * 113.99829 * 184.95339 * 17 16 15 38 38 H 1.48496 * 110.00383 * 300.00425 * 18 16 15 39 39 H 1.48500 * 109.99508 * 61.32553 * 18 16 15 40 40 H 1.07998 * 125.20585 * 180.02562 * 20 19 15 41 41 H 1.08000 * 122.54635 * 180.23461 * 21 20 19 42 42 H 1.09001 * 109.48390 * 179.61066 * 22 9 8 43 43 H 1.09003 * 109.47682 * 59.57058 * 22 9 8 44 44 H 1.08997 * 109.46431 * 184.01364 * 23 6 5 45 45 H 1.08998 * 109.46375 * 303.99192 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1072 0.0000 4 8 1.7618 2.2340 0.0005 5 7 3.5358 0.8325 -0.0006 6 6 3.6547 -0.6312 -0.0016 7 6 4.3788 -1.1088 1.2523 8 6 5.8146 -0.5776 1.2477 9 6 6.5389 -1.0800 -0.0029 10 7 7.9160 -0.5805 -0.0029 11 16 9.1460 -1.5432 0.5474 12 8 10.3379 -0.7785 0.4288 13 8 8.6997 -2.1015 1.7755 14 6 9.3022 -2.8864 -0.5822 15 6 10.3614 -3.6972 -0.5906 16 6 11.5457 -3.5890 0.3349 17 8 11.0949 -3.2490 1.6476 18 14 12.4422 -5.2213 0.3896 19 16 10.1649 -4.9111 -1.8482 20 6 8.6091 -4.2295 -2.3048 21 6 8.3323 -3.1840 -1.5240 22 6 5.8138 -0.5756 -1.2523 23 6 4.3780 -1.1071 -1.2568 24 6 2.2233 -1.1160 -0.0005 25 8 1.8376 -2.2653 -0.0014 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5134 -0.8902 28 1 -0.3633 -0.5142 0.8897 29 1 4.2631 1.4744 -0.0003 30 1 3.8578 -0.7394 2.1356 31 1 4.3948 -2.1986 1.2696 32 1 6.3361 -0.9319 2.1369 33 1 5.7989 0.5123 1.2455 34 1 6.5480 -2.1699 -0.0035 35 1 8.1076 0.3141 -0.3252 36 1 12.2217 -2.8153 -0.0289 37 1 11.8091 -3.0883 2.2794 38 1 11.5313 -6.2848 0.8841 39 1 12.9438 -5.5708 -0.9637 40 1 7.9728 -4.6033 -3.0933 41 1 7.4225 -2.6104 -1.6219 42 1 6.3348 -0.9285 -2.1423 43 1 5.7980 0.5143 -1.2482 44 1 4.3942 -2.1967 -1.2756 45 1 3.8564 -0.7364 -2.1391 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17849356_14772022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:25 Heat of formation + Delta-G solvation = -92.840961 kcal Electronic energy + Delta-G solvation = -35423.136404 eV Core-core repulsion = 30662.570523 eV Total energy + Delta-G solvation = -4760.565882 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.084 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.83216 -40.18664 -39.64974 -39.53958 -38.00026 -37.74001 -37.11128 -36.60311 -36.14322 -33.73479 -32.38177 -32.03098 -30.03177 -28.73889 -27.59801 -25.09834 -24.58530 -24.26578 -23.54206 -21.77083 -21.75162 -21.28483 -20.25527 -19.07775 -18.98586 -18.60275 -18.30823 -17.94992 -17.71908 -17.66157 -17.35022 -16.67493 -16.56547 -16.37259 -16.00036 -15.89190 -15.72086 -15.35140 -15.21497 -15.11738 -14.74263 -14.62468 -14.45669 -14.22506 -14.00584 -13.88539 -13.81235 -13.68364 -13.63893 -13.35628 -13.00269 -12.90560 -12.81843 -12.69833 -12.62416 -12.54364 -12.32469 -12.15055 -11.91842 -11.82731 -11.76248 -11.15827 -10.91325 -10.89539 -10.78976 -10.53418 -10.15650 -9.85572 -5.34948 -0.64779 -0.56422 0.24576 0.48589 0.58505 0.93106 1.08826 1.11558 1.42592 1.75169 1.91345 1.91822 1.96204 2.72862 2.77073 2.96235 3.12021 3.19840 3.37341 3.42766 3.54854 3.70757 3.74841 3.85615 3.90436 3.91675 4.02403 4.03672 4.05572 4.17683 4.26647 4.27132 4.36464 4.40258 4.45459 4.51426 4.60171 4.64657 4.69203 4.70607 4.74251 4.79432 4.97604 5.01576 5.05203 5.64767 5.78177 5.91619 6.25068 6.33307 7.02620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.580 5.580 3 C 0.702 3.298 4 O -0.539 6.539 5 N -0.716 5.716 6 C 0.122 3.878 7 C -0.114 4.114 8 C -0.135 4.135 9 C 0.144 3.856 10 N -1.118 6.118 11 S 2.721 3.279 12 O -0.952 6.952 13 O -0.930 6.930 14 C -0.660 4.660 15 C -0.055 4.055 16 C -0.080 4.080 17 O -0.544 6.544 18 Si 0.694 3.306 19 S 0.144 5.856 20 C -0.206 4.206 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.114 4.114 24 C 0.531 3.469 25 O -0.457 6.457 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.440 0.560 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.109 0.891 37 H 0.400 0.600 38 H -0.235 1.235 39 H -0.234 1.234 40 H 0.177 0.823 41 H 0.154 0.846 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -1.387 -2.195 4.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.327 5.327 3 C 0.403 3.597 4 O -0.412 6.412 5 N -0.381 5.381 6 C 0.031 3.969 7 C -0.153 4.153 8 C -0.174 4.174 9 C 0.037 3.963 10 N -0.877 5.877 11 S 2.806 3.194 12 O -0.943 6.943 13 O -0.919 6.919 14 C -0.757 4.757 15 C -0.175 4.175 16 C -0.191 4.191 17 O -0.353 6.353 18 Si 0.591 3.409 19 S 0.407 5.593 20 C -0.341 4.341 21 C -0.121 4.121 22 C -0.167 4.167 23 C -0.153 4.153 24 C 0.317 3.683 25 O -0.325 6.325 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.286 0.714 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.255 0.745 36 H 0.126 0.874 37 H 0.251 0.749 38 H -0.158 1.158 39 H -0.158 1.158 40 H 0.195 0.805 41 H 0.172 0.828 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.255 -3.655 -2.540 5.514 hybrid contribution -1.088 1.870 -0.689 2.270 sum 2.167 -1.785 -3.229 4.279 Atomic orbital electron populations 1.21913 0.74669 1.05363 1.03721 1.46333 1.09818 1.07972 1.68610 1.15940 0.82228 0.84158 0.77406 1.91047 1.75173 1.20279 1.54702 1.45607 1.06522 1.07043 1.78936 1.21143 0.94184 0.81851 0.99757 1.21702 0.95539 1.03058 0.94986 1.22070 0.94267 1.01932 0.99156 1.20992 0.80639 0.99135 0.95582 1.55818 1.19320 1.28970 1.83587 1.01502 0.72120 0.72521 0.73302 1.93573 1.44638 1.69492 1.86554 1.93607 1.81114 1.78629 1.38579 1.29911 1.02300 1.23482 1.20011 1.23607 0.97683 0.96875 0.99321 1.24618 0.96404 1.13397 0.84693 1.86399 1.37952 1.92515 1.18455 0.94299 0.85770 0.74643 0.86160 1.84517 1.17219 1.29358 1.28214 1.25917 1.00100 1.01861 1.06267 1.19848 0.99222 0.98426 0.94584 1.21941 0.94440 1.02380 0.97989 1.21692 0.95300 1.02977 0.95308 1.20649 0.88086 0.84924 0.74644 1.90835 1.78978 1.17654 1.45034 0.88292 0.90248 0.90210 0.71438 0.89764 0.88562 0.88702 0.90632 0.88796 0.74496 0.87374 0.74859 1.15778 1.15841 0.80526 0.82825 0.89567 0.90184 0.88592 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.09 10.89 59.85 0.65 0.56 16 2 N -0.58 -0.27 3.01 -128.24 -0.39 -0.65 16 3 C 0.70 0.88 8.63 -87.82 -0.76 0.12 16 4 O -0.54 -2.66 17.24 5.33 0.09 -2.57 16 5 N -0.72 1.52 5.23 -53.87 -0.28 1.24 16 6 C 0.12 -0.29 0.84 -133.11 -0.11 -0.40 16 7 C -0.11 0.30 4.98 -26.96 -0.13 0.17 16 8 C -0.14 0.39 5.42 -26.68 -0.14 0.24 16 9 C 0.14 -0.47 1.50 -67.93 -0.10 -0.57 16 10 N -1.12 2.57 5.21 -4.89 -0.03 2.54 16 11 S 2.72 5.06 4.12 -107.50 -0.44 4.62 16 12 O -0.95 -3.92 17.15 -61.62 -1.06 -4.98 16 13 O -0.93 -4.25 16.34 -65.05 -1.06 -5.31 16 14 C -0.66 -1.21 5.71 -41.21 -0.24 -1.45 16 15 C -0.05 -0.12 5.78 -36.00 -0.21 -0.33 16 16 C -0.08 -0.03 2.35 36.00 0.08 0.05 16 17 O -0.54 -0.52 9.55 -59.43 -0.57 -1.09 16 18 Si 0.69 -0.97 31.26 -169.99 -5.31 -6.29 16 19 S 0.14 0.14 20.85 -107.50 -2.24 -2.10 16 20 C -0.21 0.11 11.23 29.04 0.33 0.44 16 21 C -0.09 0.03 9.04 -41.21 -0.37 -0.34 16 22 C -0.13 0.65 5.10 -26.68 -0.14 0.52 16 23 C -0.11 0.46 4.99 -26.95 -0.13 0.33 16 24 C 0.53 0.16 6.95 -10.71 -0.07 0.09 16 25 O -0.46 -1.29 17.86 5.59 0.10 -1.19 16 26 H 0.10 -0.09 7.45 -51.93 -0.39 -0.48 16 27 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.44 -1.73 7.71 -40.82 -0.31 -2.04 16 30 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 31 H 0.10 -0.25 8.14 -51.93 -0.42 -0.68 16 32 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 33 H 0.08 -0.31 7.33 -51.93 -0.38 -0.69 16 34 H 0.09 -0.31 6.35 -51.93 -0.33 -0.64 16 35 H 0.42 -1.82 8.86 -34.47 -0.31 -2.12 16 36 H 0.11 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.40 -1.71 8.86 45.56 0.40 -1.31 16 38 H -0.23 -0.37 7.11 56.52 0.40 0.03 16 39 H -0.23 0.03 7.11 56.52 0.40 0.43 16 40 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 41 H 0.15 -0.52 4.46 -52.49 -0.23 -0.76 16 42 H 0.09 -0.51 7.22 -51.93 -0.37 -0.89 16 43 H 0.08 -0.48 7.33 -51.93 -0.38 -0.86 16 44 H 0.10 -0.42 8.14 -51.93 -0.42 -0.84 16 45 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 LS Contribution 383.77 15.07 5.78 5.78 Total: 0.00 -13.99 383.77 -12.04 -26.03 By element: Atomic # 1 Polarization: -10.17 SS G_CDS: -5.28 Total: -15.45 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.35 Total: -0.58 kcal Atomic # 7 Polarization: 3.82 SS G_CDS: -0.69 Total: 3.13 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -2.50 Total: -15.14 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.31 Total: -6.29 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -2.69 Total: 2.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -13.99 -12.04 -26.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849356_14772022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.816 kcal (2) G-P(sol) polarization free energy of solvation -13.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds