Wall clock time and date at job start Tue Mar 9 2021 13:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33864 * 124.19364 * 2 1 4 4 O 1.21536 * 123.79097 * 0.02562 * 3 2 1 5 5 N 1.34683 * 112.42138 * 180.02562 * 3 2 1 6 6 C 1.46853 * 106.41643 * 0.02562 * 5 3 2 7 7 C 1.52468 * 110.49116 * 241.44109 * 6 5 3 8 8 C 1.53093 * 109.52785 * 295.99395 * 7 6 5 9 9 C 1.53000 * 109.41706 * 300.84151 * 8 7 6 10 10 N 1.46495 * 109.45381 * 180.42821 * 9 8 7 11 11 S 1.65606 * 120.00036 * 97.33891 * 10 9 8 12 12 O 1.42101 * 106.40301 * 180.43756 * 11 10 9 13 13 O 1.42097 * 106.39999 * 313.36070 * 11 10 9 14 14 C 1.76205 * 107.21560 * 66.89904 * 11 10 9 15 15 C 1.33391 * 122.53510 * 166.13405 * 14 11 10 16 16 C 1.50698 * 125.20572 * 359.97438 * 15 14 11 17 17 O 1.42902 * 109.46927 * 39.65403 * 16 15 14 18 18 Si 1.86305 * 109.46948 * 159.64830 * 16 15 14 19 19 S 1.75882 * 109.59006 * 180.02562 * 15 14 11 20 20 C 1.75882 * 90.97346 * 359.97438 * 19 15 14 21 21 C 1.33388 * 109.59225 * 359.73426 * 20 19 15 22 22 C 1.53004 * 109.56738 * 60.39938 * 9 8 7 23 23 C 1.52481 * 110.48817 * 118.55092 * 6 5 3 24 24 C 1.34921 * 124.19451 * 180.02562 * 2 1 3 25 25 O 1.21237 * 127.25382 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.46854 * 359.97213 * 1 2 3 27 27 H 1.08999 * 109.46924 * 119.97406 * 1 2 3 28 28 H 1.08997 * 109.46848 * 239.97448 * 1 2 3 29 29 H 0.96999 * 126.79336 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.46612 * 56.01343 * 7 6 5 31 31 H 1.09004 * 109.45972 * 175.97468 * 7 6 5 32 32 H 1.08998 * 109.47804 * 180.85250 * 8 7 6 33 33 H 1.08996 * 109.47591 * 60.82021 * 8 7 6 34 34 H 1.08998 * 109.43968 * 300.37839 * 9 8 7 35 35 H 0.96998 * 120.00722 * 277.33794 * 10 9 8 36 36 H 1.08995 * 109.47379 * 279.65195 * 16 15 14 37 37 H 0.96697 * 113.99829 * 184.95339 * 17 16 15 38 38 H 1.48496 * 110.00383 * 300.00425 * 18 16 15 39 39 H 1.48500 * 109.99508 * 61.32553 * 18 16 15 40 40 H 1.07998 * 125.20585 * 180.02562 * 20 19 15 41 41 H 1.08000 * 122.54635 * 180.23461 * 21 20 19 42 42 H 1.09001 * 109.48390 * 179.61066 * 22 9 8 43 43 H 1.09003 * 109.47682 * 59.57058 * 22 9 8 44 44 H 1.08997 * 109.46431 * 184.01364 * 23 6 5 45 45 H 1.08998 * 109.46375 * 303.99192 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1072 0.0000 4 8 1.7618 2.2340 0.0005 5 7 3.5358 0.8325 -0.0006 6 6 3.6547 -0.6312 -0.0016 7 6 4.3788 -1.1088 1.2523 8 6 5.8146 -0.5776 1.2477 9 6 6.5389 -1.0800 -0.0029 10 7 7.9160 -0.5805 -0.0029 11 16 9.1460 -1.5432 0.5474 12 8 10.3379 -0.7785 0.4288 13 8 8.6997 -2.1015 1.7755 14 6 9.3022 -2.8864 -0.5822 15 6 10.3614 -3.6972 -0.5906 16 6 11.5457 -3.5890 0.3349 17 8 11.0949 -3.2490 1.6476 18 14 12.4422 -5.2213 0.3896 19 16 10.1649 -4.9111 -1.8482 20 6 8.6091 -4.2295 -2.3048 21 6 8.3323 -3.1840 -1.5240 22 6 5.8138 -0.5756 -1.2523 23 6 4.3780 -1.1071 -1.2568 24 6 2.2233 -1.1160 -0.0005 25 8 1.8376 -2.2653 -0.0014 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5134 -0.8902 28 1 -0.3633 -0.5142 0.8897 29 1 4.2631 1.4744 -0.0003 30 1 3.8578 -0.7394 2.1356 31 1 4.3948 -2.1986 1.2696 32 1 6.3361 -0.9319 2.1369 33 1 5.7989 0.5123 1.2455 34 1 6.5480 -2.1699 -0.0035 35 1 8.1076 0.3141 -0.3252 36 1 12.2217 -2.8153 -0.0289 37 1 11.8091 -3.0883 2.2794 38 1 11.5313 -6.2848 0.8841 39 1 12.9438 -5.5708 -0.9637 40 1 7.9728 -4.6033 -3.0933 41 1 7.4225 -2.6104 -1.6219 42 1 6.3348 -0.9285 -2.1423 43 1 5.7980 0.5143 -1.2482 44 1 4.3942 -2.1967 -1.2756 45 1 3.8564 -0.7364 -2.1391 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17849356_14772022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:24 Heat of formation + Delta-G solvation = -101.133978 kcal Electronic energy + Delta-G solvation = -35423.496017 eV Core-core repulsion = 30662.570523 eV Total energy + Delta-G solvation = -4760.925494 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.81749 -40.10280 -39.69408 -39.51984 -38.17607 -37.74884 -37.18608 -36.80062 -36.10279 -33.63122 -32.12918 -31.98505 -29.92311 -28.65919 -27.58752 -25.06944 -24.53319 -24.02942 -23.44607 -21.76385 -21.72011 -21.11036 -20.26171 -19.08878 -18.99178 -18.59306 -18.26936 -17.96258 -17.70180 -17.67768 -17.33568 -16.65868 -16.56315 -16.39438 -16.03075 -15.80561 -15.55515 -15.35276 -15.30358 -15.05000 -14.58710 -14.50818 -14.41876 -14.21167 -13.93714 -13.80568 -13.79334 -13.57004 -13.42650 -13.23969 -13.13572 -13.06394 -12.94432 -12.68696 -12.63297 -12.27712 -12.18631 -12.12647 -11.98295 -11.81149 -11.63034 -11.15022 -10.97404 -10.87769 -10.67068 -10.41848 -10.18311 -9.84053 -5.25439 -0.72907 -0.59240 0.22566 0.44888 0.61120 0.99161 1.12650 1.14741 1.49478 1.80065 1.85093 1.95568 2.04356 2.68967 2.79351 3.03462 3.33522 3.42456 3.46753 3.57918 3.63578 3.93889 3.95544 3.95775 4.02709 4.11966 4.15495 4.18253 4.25391 4.35743 4.37095 4.39707 4.54082 4.56055 4.60509 4.67866 4.72772 4.76009 4.87571 4.93547 5.02624 5.04560 5.09144 5.24635 5.32297 5.74262 5.90793 6.04770 6.25832 6.60096 7.01211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.700 3.300 4 O -0.580 6.580 5 N -0.697 5.697 6 C 0.129 3.871 7 C -0.111 4.111 8 C -0.135 4.135 9 C 0.137 3.863 10 N -1.102 6.102 11 S 2.733 3.267 12 O -0.981 6.981 13 O -0.964 6.964 14 C -0.671 4.671 15 C -0.083 4.083 16 C -0.098 4.098 17 O -0.565 6.565 18 Si 0.779 3.221 19 S 0.121 5.879 20 C -0.200 4.200 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.112 4.112 24 C 0.530 3.470 25 O -0.484 6.484 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.450 0.550 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.432 0.568 36 H 0.120 0.880 37 H 0.418 0.582 38 H -0.280 1.280 39 H -0.250 1.250 40 H 0.207 0.793 41 H 0.184 0.816 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -1.121 -3.437 4.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.330 5.330 3 C 0.401 3.599 4 O -0.456 6.456 5 N -0.362 5.362 6 C 0.038 3.962 7 C -0.150 4.150 8 C -0.174 4.174 9 C 0.031 3.969 10 N -0.865 5.865 11 S 2.819 3.181 12 O -0.971 6.971 13 O -0.953 6.953 14 C -0.770 4.770 15 C -0.203 4.203 16 C -0.208 4.208 17 O -0.378 6.378 18 Si 0.679 3.321 19 S 0.383 5.617 20 C -0.335 4.335 21 C -0.127 4.127 22 C -0.162 4.162 23 C -0.151 4.151 24 C 0.317 3.683 25 O -0.354 6.354 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.298 0.702 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.269 0.731 36 H 0.138 0.862 37 H 0.272 0.728 38 H -0.206 1.206 39 H -0.176 1.176 40 H 0.224 0.776 41 H 0.201 0.799 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.406 -3.351 -3.765 6.083 hybrid contribution -1.206 1.760 -0.293 2.153 sum 2.200 -1.591 -4.058 4.882 Atomic orbital electron populations 1.22036 0.74228 1.05421 1.04569 1.46453 1.10420 1.07965 1.68167 1.16064 0.83068 0.83636 0.77134 1.91020 1.76035 1.21760 1.56799 1.45544 1.05633 1.07490 1.77568 1.21190 0.92710 0.81262 1.00999 1.21675 0.95553 1.03159 0.94613 1.22054 0.93751 1.02817 0.98770 1.21172 0.79902 0.99460 0.96392 1.55453 1.18802 1.28987 1.83281 1.00815 0.71992 0.72333 0.72956 1.93524 1.46471 1.70150 1.86957 1.93565 1.81628 1.79378 1.40757 1.30035 1.03009 1.23427 1.20487 1.23991 0.98695 0.97443 1.00200 1.24959 0.96323 1.15088 0.84414 1.86361 1.39619 1.92671 1.19124 0.93342 0.83603 0.71308 0.83893 1.84557 1.19020 1.29690 1.28389 1.26300 0.99181 1.01315 1.06656 1.20181 0.99773 0.98853 0.93890 1.21955 0.93404 1.03333 0.97508 1.21745 0.95584 1.03559 0.94194 1.21020 0.89070 0.84415 0.73757 1.90820 1.79660 1.18577 1.46392 0.88604 0.89287 0.89556 0.70206 0.90231 0.88464 0.90417 0.89218 0.88645 0.73051 0.86215 0.72801 1.20577 1.17555 0.77626 0.79901 0.87646 0.88740 0.87832 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.12 10.89 127.77 1.39 1.27 16 2 N -0.58 -0.61 3.01 -796.76 -2.40 -3.01 16 3 C 0.70 1.73 8.63 179.37 1.55 3.28 16 4 O -0.58 -6.05 17.24 -3.83 -0.07 -6.12 16 5 N -0.70 3.63 5.23 -442.70 -2.31 1.31 16 6 C 0.13 -0.74 0.84 2.58 0.00 -0.74 16 7 C -0.11 0.65 4.98 30.45 0.15 0.80 16 8 C -0.13 0.88 5.42 30.63 0.17 1.05 16 9 C 0.14 -1.11 1.50 44.99 0.07 -1.05 16 10 N -1.10 6.23 5.21 -169.39 -0.88 5.35 16 11 S 2.73 10.84 4.12 -56.49 -0.23 10.60 16 12 O -0.98 -8.65 17.15 -123.75 -2.12 -10.77 16 13 O -0.96 -9.76 16.34 -120.47 -1.97 -11.73 16 14 C -0.67 -2.44 5.71 21.22 0.12 -2.32 16 15 C -0.08 -0.42 5.78 24.59 0.14 -0.28 16 16 C -0.10 -0.16 2.35 71.24 0.17 0.00 16 17 O -0.56 -1.74 9.55 -125.84 -1.20 -2.94 16 18 Si 0.78 -1.57 31.26 68.60 2.14 0.58 16 19 S 0.12 0.26 20.85 -56.49 -1.18 -0.92 16 20 C -0.20 0.48 11.23 66.72 0.75 1.23 16 21 C -0.10 0.20 9.04 21.22 0.19 0.39 16 22 C -0.12 1.59 5.10 30.63 0.16 1.75 16 23 C -0.11 1.14 4.99 30.46 0.15 1.29 16 24 C 0.53 0.20 6.95 87.77 0.61 0.81 16 25 O -0.48 -2.75 17.86 -2.90 -0.05 -2.80 16 26 H 0.10 -0.09 7.45 -2.39 -0.02 -0.10 16 27 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.45 -4.22 7.71 -92.71 -0.71 -4.93 16 30 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.10 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H 0.08 -0.17 7.90 -2.39 -0.02 -0.19 16 33 H 0.09 -0.86 7.33 -2.39 -0.02 -0.87 16 34 H 0.10 -0.77 6.35 -2.39 -0.02 -0.78 16 35 H 0.43 -4.39 8.86 -96.75 -0.86 -5.25 16 36 H 0.12 -0.19 7.96 -2.39 -0.02 -0.21 16 37 H 0.42 -3.14 8.86 -74.06 -0.66 -3.80 16 38 H -0.28 -1.44 7.11 99.48 0.71 -0.73 16 39 H -0.25 -0.08 7.11 99.48 0.71 0.63 16 40 H 0.21 -1.88 8.06 -2.91 -0.02 -1.91 16 41 H 0.18 -1.70 4.46 -2.91 -0.01 -1.71 16 42 H 0.11 -1.66 7.22 -2.39 -0.02 -1.67 16 43 H 0.09 -1.43 7.33 -2.39 -0.02 -1.45 16 44 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 45 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 Total: 0.00 -33.91 383.77 -5.75 -39.66 By element: Atomic # 1 Polarization: -25.60 SS G_CDS: -1.09 Total: -26.69 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.62 Total: 7.48 kcal Atomic # 7 Polarization: 9.25 SS G_CDS: -5.60 Total: 3.65 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -5.41 Total: -34.36 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.14 Total: 0.58 kcal Atomic # 16 Polarization: 11.10 SS G_CDS: -1.41 Total: 9.69 kcal Total: -33.91 -5.75 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849356_14772022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.477 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds