Wall clock time and date at job start Tue Mar 9 2021 13:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33866 * 124.19628 * 2 1 4 4 O 1.21545 * 123.79015 * 359.97438 * 3 2 1 5 5 N 1.34670 * 112.42426 * 179.97438 * 3 2 1 6 6 C 1.46862 * 106.42519 * 0.02562 * 5 3 2 7 7 C 1.52467 * 110.47988 * 118.53900 * 6 5 3 8 8 C 1.53079 * 109.58963 * 181.30647 * 7 6 5 9 9 C 1.53015 * 109.42021 * 300.85353 * 8 7 6 10 10 N 1.46498 * 109.47042 * 180.49690 * 9 8 7 11 11 S 1.65593 * 120.00360 * 145.00045 * 10 9 8 12 12 O 1.42101 * 106.40317 * 311.45789 * 11 10 9 13 13 O 1.42100 * 106.40318 * 178.53778 * 11 10 9 14 14 C 1.76198 * 107.21808 * 64.99590 * 11 10 9 15 15 C 1.33390 * 122.54113 * 269.97503 * 14 11 10 16 16 S 1.75884 * 109.59249 * 179.77740 * 15 14 11 17 17 C 1.75883 * 90.97180 * 0.32046 * 16 15 14 18 18 C 1.50693 * 125.20254 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47661 * 119.69255 * 18 17 16 20 20 Si 1.86298 * 109.47618 * 359.68946 * 18 17 16 21 21 C 1.33392 * 109.59298 * 359.67912 * 17 16 15 22 22 C 1.53010 * 109.49675 * 60.48415 * 9 8 7 23 23 C 1.52469 * 110.48150 * 241.44601 * 6 5 3 24 24 C 1.34917 * 124.19934 * 180.02562 * 2 1 3 25 25 O 1.21239 * 127.25104 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47271 * 359.97367 * 1 2 3 27 27 H 1.09004 * 109.47168 * 119.97462 * 1 2 3 28 28 H 1.09000 * 109.47016 * 239.97873 * 1 2 3 29 29 H 0.96997 * 126.79163 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.45299 * 61.26978 * 7 6 5 31 31 H 1.09001 * 109.45771 * 301.34049 * 7 6 5 32 32 H 1.09006 * 109.47714 * 180.87448 * 8 7 6 33 33 H 1.08996 * 109.48429 * 60.84063 * 8 7 6 34 34 H 1.09009 * 109.46601 * 300.48468 * 9 8 7 35 35 H 0.97005 * 119.99572 * 325.00092 * 10 9 8 36 36 H 1.07999 * 125.20680 * 0.06367 * 15 14 11 37 37 H 1.09000 * 109.46936 * 239.68879 * 18 17 16 38 38 H 0.96697 * 114.00527 * 179.97438 * 19 18 17 39 39 H 1.48506 * 109.99834 * 298.68714 * 20 18 17 40 40 H 1.48502 * 110.00011 * 59.99978 * 20 18 17 41 41 H 1.07996 * 122.53741 * 180.26645 * 21 17 16 42 42 H 1.09001 * 109.47825 * 59.50071 * 22 9 8 43 43 H 1.08996 * 109.48093 * 179.53155 * 22 9 8 44 44 H 1.09003 * 109.44958 * 298.72832 * 23 6 5 45 45 H 1.09001 * 109.45092 * 58.66136 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1072 0.0000 4 8 1.7617 2.2341 -0.0005 5 7 3.5357 0.8325 0.0006 6 6 3.6548 -0.6313 0.0003 7 6 4.3788 -1.1074 -1.2542 8 6 4.4629 -2.6359 -1.2493 9 6 5.2139 -3.1002 0.0004 10 7 5.3054 -4.5623 0.0001 11 16 6.6539 -5.3077 0.6068 12 8 7.7714 -4.6556 0.0193 13 8 6.4234 -6.7056 0.4967 14 6 6.7176 -4.9481 2.3305 15 6 7.3505 -3.8797 2.8176 16 16 7.1944 -3.8495 4.5693 17 6 6.2589 -5.3387 4.5415 18 6 5.6991 -6.0357 5.7546 19 8 4.2759 -6.1081 5.6482 20 14 6.1594 -5.0813 7.2869 21 6 6.1152 -5.7533 3.2818 22 6 4.4621 -2.6364 1.2497 23 6 4.3780 -1.1079 1.2552 24 6 2.2233 -1.1159 -0.0005 25 8 1.8376 -2.2653 -0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5135 -0.8902 28 1 -0.3633 -0.5142 0.8898 29 1 4.2629 1.4744 0.0010 30 1 5.3850 -0.6886 -1.2736 31 1 3.8313 -0.7769 -2.1369 32 1 4.9944 -2.9735 -2.1392 33 1 3.4569 -3.0553 -1.2456 34 1 6.2170 -2.6735 0.0008 35 1 4.5760 -5.0937 -0.3555 36 1 7.8743 -3.1431 2.2265 37 1 6.1104 -7.0432 5.8168 38 1 3.8472 -6.5459 6.3962 39 1 7.6369 -5.0261 7.4262 40 1 5.6045 -3.7058 7.2144 41 1 5.5700 -6.6490 3.0237 42 1 3.4560 -3.0558 1.2451 43 1 4.9928 -2.9744 2.1397 44 1 5.3842 -0.6891 1.2754 45 1 3.8298 -0.7776 2.1375 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17849356_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:29 Heat of formation + Delta-G solvation = -95.807930 kcal Electronic energy + Delta-G solvation = -35354.769827 eV Core-core repulsion = 30594.075288 eV Total energy + Delta-G solvation = -4760.694539 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.084 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.88718 -40.34745 -39.49573 -39.16281 -38.22929 -37.63873 -37.31506 -36.87975 -36.16452 -33.88270 -32.40535 -31.99585 -29.45555 -28.98303 -27.28745 -25.11127 -24.93931 -24.23654 -23.22464 -22.66577 -21.29769 -20.83787 -20.13294 -19.18823 -19.05855 -18.62079 -18.50932 -18.06226 -17.83615 -17.80581 -17.31979 -16.73330 -16.51958 -16.33049 -16.02204 -15.89709 -15.57908 -15.56392 -15.04410 -14.71526 -14.66128 -14.59642 -14.35945 -14.23826 -14.13417 -13.96804 -13.94587 -13.66532 -13.62546 -13.37047 -13.15898 -13.07402 -12.90569 -12.72392 -12.67371 -12.53577 -12.43222 -12.23325 -11.99390 -11.83928 -11.82547 -10.98550 -10.89760 -10.72126 -10.66568 -10.55553 -10.18521 -9.90795 -5.39791 -0.78857 -0.54195 0.24894 0.46430 0.52611 0.94653 1.04835 1.08679 1.42200 1.72252 1.88372 1.89011 1.97994 2.67531 2.70398 3.10252 3.15771 3.19126 3.34679 3.49751 3.60467 3.69528 3.74686 3.79982 3.90023 3.92402 3.99657 4.10088 4.15355 4.24418 4.25534 4.31888 4.34590 4.38856 4.52826 4.58406 4.60683 4.63029 4.64870 4.82206 4.83514 4.84921 4.99656 5.02191 5.18199 5.62109 5.83768 5.88841 6.24160 6.40561 6.99531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.580 5.580 3 C 0.702 3.298 4 O -0.538 6.538 5 N -0.719 5.719 6 C 0.120 3.880 7 C -0.111 4.111 8 C -0.131 4.131 9 C 0.152 3.848 10 N -1.107 6.107 11 S 2.709 3.291 12 O -0.952 6.952 13 O -0.949 6.949 14 C -0.683 4.683 15 C -0.086 4.086 16 S 0.137 5.863 17 C -0.182 4.182 18 C -0.036 4.036 19 O -0.542 6.542 20 Si 0.671 3.329 21 C -0.036 4.036 22 C -0.152 4.152 23 C -0.110 4.110 24 C 0.531 3.469 25 O -0.452 6.452 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.442 0.558 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.423 0.577 36 H 0.186 0.814 37 H 0.088 0.912 38 H 0.386 0.614 39 H -0.238 1.238 40 H -0.235 1.235 41 H 0.159 0.841 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 0.097 4.035 4.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.327 5.327 3 C 0.402 3.598 4 O -0.411 6.411 5 N -0.383 5.383 6 C 0.029 3.971 7 C -0.150 4.150 8 C -0.170 4.170 9 C 0.044 3.956 10 N -0.866 5.866 11 S 2.795 3.205 12 O -0.942 6.942 13 O -0.939 6.939 14 C -0.782 4.782 15 C -0.224 4.224 16 S 0.401 5.599 17 C -0.299 4.299 18 C -0.149 4.149 19 O -0.349 6.349 20 Si 0.570 3.430 21 C -0.065 4.065 22 C -0.191 4.191 23 C -0.150 4.150 24 C 0.317 3.683 25 O -0.320 6.320 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.287 0.713 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.259 0.741 36 H 0.204 0.796 37 H 0.105 0.895 38 H 0.235 0.765 39 H -0.162 1.162 40 H -0.159 1.159 41 H 0.177 0.823 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.644 1.663 4.597 4.930 hybrid contribution -0.689 -0.651 -0.916 1.318 sum -0.045 1.012 3.680 3.817 Atomic orbital electron populations 1.21914 0.74664 1.05373 1.03728 1.46343 1.09820 1.07962 1.68623 1.15943 0.82213 0.84196 0.77418 1.91051 1.75154 1.20283 1.54648 1.45592 1.06714 1.07019 1.79020 1.21166 0.94695 0.81465 0.99737 1.21657 1.01834 0.96538 0.94982 1.21932 1.03084 0.94129 0.97871 1.20856 1.00496 0.78751 0.95466 1.55546 1.38826 1.14839 1.77397 1.01641 0.72981 0.73037 0.72833 1.93610 1.49301 1.76680 1.74576 1.93619 1.85067 1.29258 1.85989 1.30089 1.14635 1.05995 1.27528 1.25915 0.98639 0.99322 0.98545 1.84483 1.49580 1.21640 1.04199 1.23683 1.07973 1.00257 0.97980 1.23990 0.85299 1.03975 1.01630 1.86500 1.16418 1.82829 1.49132 0.94670 0.82790 0.81998 0.83517 1.19580 0.97319 0.99823 0.89752 1.22303 1.04089 0.94240 0.98503 1.21634 1.01665 0.96592 0.95083 1.20634 0.88020 0.84953 0.74650 1.90778 1.78863 1.17470 1.44919 0.88312 0.90192 0.90230 0.71323 0.88874 0.89882 0.89430 0.89032 0.88650 0.74089 0.79642 0.89474 0.76536 1.16197 1.15866 0.82325 0.88701 0.90412 0.89115 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.10 10.89 59.84 0.65 0.55 16 2 N -0.58 -0.21 3.01 -128.24 -0.39 -0.59 16 3 C 0.70 0.92 8.63 -87.83 -0.76 0.16 16 4 O -0.54 -2.69 17.24 5.33 0.09 -2.60 16 5 N -0.72 1.54 5.88 -53.87 -0.32 1.22 16 6 C 0.12 -0.30 1.01 -133.11 -0.13 -0.43 16 7 C -0.11 0.40 5.10 -26.96 -0.14 0.26 16 8 C -0.13 0.37 5.20 -26.68 -0.14 0.23 16 9 C 0.15 -0.37 2.77 -67.92 -0.19 -0.56 16 10 N -1.11 1.68 5.47 -4.88 -0.03 1.65 16 11 S 2.71 3.28 5.78 -107.50 -0.62 2.66 16 12 O -0.95 -3.17 16.98 -57.17 -0.97 -4.14 16 13 O -0.95 -4.15 17.63 -57.17 -1.01 -5.15 16 14 C -0.68 -0.51 4.99 -41.21 -0.21 -0.71 16 15 C -0.09 0.04 9.75 29.04 0.28 0.32 16 16 S 0.14 0.06 20.58 -107.50 -2.21 -2.16 16 17 C -0.18 -0.22 5.76 -36.01 -0.21 -0.42 16 18 C -0.04 0.04 2.95 36.00 0.11 0.14 16 19 O -0.54 0.51 12.83 -35.23 -0.45 0.06 16 20 Si 0.67 -1.31 30.97 -169.99 -5.26 -6.58 16 21 C -0.04 -0.05 9.56 -41.21 -0.39 -0.45 16 22 C -0.15 0.34 5.28 -26.68 -0.14 0.20 16 23 C -0.11 0.36 5.10 -26.96 -0.14 0.23 16 24 C 0.53 -0.03 6.53 -10.71 -0.07 -0.10 16 25 O -0.45 -0.72 13.94 5.59 0.08 -0.64 16 26 H 0.10 -0.10 7.45 -51.93 -0.39 -0.48 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 29 H 0.44 -1.86 8.96 -40.82 -0.37 -2.23 16 30 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16 31 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 33 H 0.09 -0.16 6.11 -51.93 -0.32 -0.47 16 34 H 0.10 -0.33 7.50 -51.92 -0.39 -0.72 16 35 H 0.42 -1.15 8.84 -34.47 -0.30 -1.46 16 36 H 0.19 -0.55 8.00 -52.49 -0.42 -0.97 16 37 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 38 H 0.39 -2.29 8.74 45.56 0.40 -1.89 16 39 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 40 H -0.24 -0.19 7.11 56.52 0.40 0.21 16 41 H 0.16 0.18 7.96 -52.49 -0.42 -0.24 16 42 H 0.09 -0.07 6.11 -51.93 -0.32 -0.38 16 43 H 0.08 -0.16 6.16 -51.93 -0.32 -0.48 16 44 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 45 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 LS Contribution 388.86 15.07 5.86 5.86 Total: 0.00 -13.32 388.86 -12.11 -25.43 By element: Atomic # 1 Polarization: -9.04 SS G_CDS: -5.41 Total: -14.45 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.47 Total: -0.58 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -0.73 Total: 2.29 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.26 Total: -12.47 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.26 Total: -6.58 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.83 Total: 0.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -13.32 -12.11 -25.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849356_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.378 kcal (2) G-P(sol) polarization free energy of solvation -13.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds