Wall clock time and date at job start Tue Mar 9 2021 13:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33866 * 124.19628 * 2 1 4 4 O 1.21545 * 123.79015 * 359.97438 * 3 2 1 5 5 N 1.34670 * 112.42426 * 179.97438 * 3 2 1 6 6 C 1.46862 * 106.42519 * 0.02562 * 5 3 2 7 7 C 1.52467 * 110.47988 * 118.53900 * 6 5 3 8 8 C 1.53079 * 109.58963 * 181.30647 * 7 6 5 9 9 C 1.53015 * 109.42021 * 300.85353 * 8 7 6 10 10 N 1.46498 * 109.47042 * 180.49690 * 9 8 7 11 11 S 1.65593 * 120.00360 * 145.00045 * 10 9 8 12 12 O 1.42101 * 106.40317 * 311.45789 * 11 10 9 13 13 O 1.42100 * 106.40318 * 178.53778 * 11 10 9 14 14 C 1.76198 * 107.21808 * 64.99590 * 11 10 9 15 15 C 1.33390 * 122.54113 * 269.97503 * 14 11 10 16 16 S 1.75884 * 109.59249 * 179.77740 * 15 14 11 17 17 C 1.75883 * 90.97180 * 0.32046 * 16 15 14 18 18 C 1.50693 * 125.20254 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.47661 * 119.69255 * 18 17 16 20 20 Si 1.86298 * 109.47618 * 359.68946 * 18 17 16 21 21 C 1.33392 * 109.59298 * 359.67912 * 17 16 15 22 22 C 1.53010 * 109.49675 * 60.48415 * 9 8 7 23 23 C 1.52469 * 110.48150 * 241.44601 * 6 5 3 24 24 C 1.34917 * 124.19934 * 180.02562 * 2 1 3 25 25 O 1.21239 * 127.25104 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47271 * 359.97367 * 1 2 3 27 27 H 1.09004 * 109.47168 * 119.97462 * 1 2 3 28 28 H 1.09000 * 109.47016 * 239.97873 * 1 2 3 29 29 H 0.96997 * 126.79163 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.45299 * 61.26978 * 7 6 5 31 31 H 1.09001 * 109.45771 * 301.34049 * 7 6 5 32 32 H 1.09006 * 109.47714 * 180.87448 * 8 7 6 33 33 H 1.08996 * 109.48429 * 60.84063 * 8 7 6 34 34 H 1.09009 * 109.46601 * 300.48468 * 9 8 7 35 35 H 0.97005 * 119.99572 * 325.00092 * 10 9 8 36 36 H 1.07999 * 125.20680 * 0.06367 * 15 14 11 37 37 H 1.09000 * 109.46936 * 239.68879 * 18 17 16 38 38 H 0.96697 * 114.00527 * 179.97438 * 19 18 17 39 39 H 1.48506 * 109.99834 * 298.68714 * 20 18 17 40 40 H 1.48502 * 110.00011 * 59.99978 * 20 18 17 41 41 H 1.07996 * 122.53741 * 180.26645 * 21 17 16 42 42 H 1.09001 * 109.47825 * 59.50071 * 22 9 8 43 43 H 1.08996 * 109.48093 * 179.53155 * 22 9 8 44 44 H 1.09003 * 109.44958 * 298.72832 * 23 6 5 45 45 H 1.09001 * 109.45092 * 58.66136 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2173 1.1072 0.0000 4 8 1.7617 2.2341 -0.0005 5 7 3.5357 0.8325 0.0006 6 6 3.6548 -0.6313 0.0003 7 6 4.3788 -1.1074 -1.2542 8 6 4.4629 -2.6359 -1.2493 9 6 5.2139 -3.1002 0.0004 10 7 5.3054 -4.5623 0.0001 11 16 6.6539 -5.3077 0.6068 12 8 7.7714 -4.6556 0.0193 13 8 6.4234 -6.7056 0.4967 14 6 6.7176 -4.9481 2.3305 15 6 7.3505 -3.8797 2.8176 16 16 7.1944 -3.8495 4.5693 17 6 6.2589 -5.3387 4.5415 18 6 5.6991 -6.0357 5.7546 19 8 4.2759 -6.1081 5.6482 20 14 6.1594 -5.0813 7.2869 21 6 6.1152 -5.7533 3.2818 22 6 4.4621 -2.6364 1.2497 23 6 4.3780 -1.1079 1.2552 24 6 2.2233 -1.1159 -0.0005 25 8 1.8376 -2.2653 -0.0006 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5135 -0.8902 28 1 -0.3633 -0.5142 0.8898 29 1 4.2629 1.4744 0.0010 30 1 5.3850 -0.6886 -1.2736 31 1 3.8313 -0.7769 -2.1369 32 1 4.9944 -2.9735 -2.1392 33 1 3.4569 -3.0553 -1.2456 34 1 6.2170 -2.6735 0.0008 35 1 4.5760 -5.0937 -0.3555 36 1 7.8743 -3.1431 2.2265 37 1 6.1104 -7.0432 5.8168 38 1 3.8472 -6.5459 6.3962 39 1 7.6369 -5.0261 7.4262 40 1 5.6045 -3.7058 7.2144 41 1 5.5700 -6.6490 3.0237 42 1 3.4560 -3.0558 1.2451 43 1 4.9928 -2.9744 2.1397 44 1 5.3842 -0.6891 1.2754 45 1 3.8298 -0.7776 2.1375 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17849356_15065232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:28 Heat of formation + Delta-G solvation = -104.763286 kcal Electronic energy + Delta-G solvation = -35355.158160 eV Core-core repulsion = 30594.075288 eV Total energy + Delta-G solvation = -4761.082872 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.85173 -40.33047 -39.48736 -39.12206 -38.40654 -37.54996 -37.37780 -37.07535 -36.12664 -33.79029 -32.21936 -31.92096 -29.36152 -28.90465 -27.25282 -25.07008 -24.93173 -24.02019 -23.13408 -22.55980 -21.30911 -20.76321 -20.14582 -19.16048 -19.04084 -18.64885 -18.41169 -18.05112 -17.86522 -17.75971 -17.29092 -16.69148 -16.56065 -16.28513 -16.10092 -15.81232 -15.53068 -15.48989 -14.97835 -14.60895 -14.58945 -14.53014 -14.33589 -14.20243 -14.13330 -13.89186 -13.80719 -13.59771 -13.41319 -13.38098 -13.31063 -13.27863 -12.90902 -12.68416 -12.66547 -12.36179 -12.26083 -12.20671 -11.92052 -11.88778 -11.84492 -10.95212 -10.90571 -10.62372 -10.58483 -10.43655 -10.15966 -9.92450 -5.25844 -0.84199 -0.55941 0.24438 0.46037 0.52200 0.91841 1.13431 1.15024 1.52816 1.81743 1.83180 1.95040 2.04666 2.62069 2.77497 3.13989 3.34094 3.37259 3.43017 3.69178 3.71659 3.85241 3.88616 3.94033 4.02871 4.10607 4.16115 4.25729 4.34563 4.39011 4.39366 4.41478 4.50834 4.56309 4.57838 4.68848 4.72634 4.82183 4.83214 4.91618 4.98323 5.03207 5.06585 5.21000 5.37487 5.73754 5.90171 5.97730 6.28717 6.79549 6.99884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.586 5.586 3 C 0.698 3.302 4 O -0.581 6.581 5 N -0.700 5.700 6 C 0.127 3.873 7 C -0.108 4.108 8 C -0.129 4.129 9 C 0.146 3.854 10 N -1.099 6.099 11 S 2.727 3.273 12 O -0.972 6.972 13 O -0.986 6.986 14 C -0.690 4.690 15 C -0.075 4.075 16 S 0.130 5.870 17 C -0.198 4.198 18 C -0.046 4.046 19 O -0.560 6.560 20 Si 0.753 3.247 21 C -0.050 4.050 22 C -0.149 4.149 23 C -0.109 4.109 24 C 0.525 3.475 25 O -0.471 6.471 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.453 0.547 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.428 0.572 36 H 0.213 0.787 37 H 0.104 0.896 38 H 0.406 0.594 39 H -0.267 1.267 40 H -0.274 1.274 41 H 0.155 0.845 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.461 0.453 4.161 4.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.399 3.601 4 O -0.457 6.457 5 N -0.364 5.364 6 C 0.036 3.964 7 C -0.147 4.147 8 C -0.168 4.168 9 C 0.040 3.960 10 N -0.860 5.860 11 S 2.815 3.185 12 O -0.962 6.962 13 O -0.976 6.976 14 C -0.790 4.790 15 C -0.213 4.213 16 S 0.393 5.607 17 C -0.316 4.316 18 C -0.159 4.159 19 O -0.370 6.370 20 Si 0.656 3.344 21 C -0.079 4.079 22 C -0.189 4.189 23 C -0.148 4.148 24 C 0.313 3.687 25 O -0.341 6.341 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.301 0.699 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.266 0.734 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.258 0.742 39 H -0.193 1.193 40 H -0.200 1.200 41 H 0.173 0.827 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.673 1.967 4.715 5.376 hybrid contribution -1.053 -0.757 -0.930 1.596 sum 0.620 1.210 3.785 4.021 Atomic orbital electron populations 1.22018 0.74332 1.05345 1.04519 1.46477 1.10378 1.08024 1.68318 1.16099 0.83140 0.83692 0.77173 1.91019 1.76057 1.21820 1.56849 1.45520 1.05792 1.07493 1.77617 1.21233 0.93268 0.80858 1.01012 1.21707 1.03066 0.95920 0.94025 1.21907 1.02339 0.94646 0.97942 1.21068 1.01501 0.77900 0.95556 1.55339 1.38210 1.15467 1.76959 1.00850 0.72901 0.72055 0.72725 1.93577 1.50592 1.76811 1.75227 1.93567 1.85671 1.31753 1.86627 1.29960 1.15518 1.06601 1.26913 1.26250 0.97648 0.99207 0.98228 1.84525 1.49619 1.21543 1.05035 1.24043 1.08158 1.00632 0.98717 1.24200 0.85491 1.05004 1.01168 1.86451 1.16442 1.83364 1.50761 0.93703 0.79726 0.79171 0.81844 1.19670 0.97845 1.00095 0.90243 1.22247 1.03080 0.94933 0.98631 1.21680 1.03072 0.95844 0.94193 1.21076 0.89064 0.84541 0.74030 1.90771 1.79455 1.18122 1.45770 0.88721 0.89350 0.89556 0.69940 0.86161 0.89949 0.88592 0.90425 0.86869 0.73449 0.76986 0.87834 0.74180 1.19304 1.19973 0.82728 0.90516 0.90433 0.86122 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.10 10.89 127.77 1.39 1.29 16 2 N -0.59 -0.79 3.01 -796.77 -2.40 -3.18 16 3 C 0.70 2.08 8.63 179.37 1.55 3.62 16 4 O -0.58 -6.39 17.24 -3.86 -0.07 -6.46 16 5 N -0.70 3.60 5.88 -442.70 -2.60 1.00 16 6 C 0.13 -0.75 1.01 2.57 0.00 -0.75 16 7 C -0.11 0.97 5.10 30.44 0.16 1.12 16 8 C -0.13 0.86 5.20 30.63 0.16 1.02 16 9 C 0.15 -0.88 2.77 45.00 0.12 -0.75 16 10 N -1.10 3.43 5.47 -169.35 -0.93 2.50 16 11 S 2.73 7.06 5.78 -56.49 -0.33 6.73 16 12 O -0.97 -5.93 16.98 -128.00 -2.17 -8.10 16 13 O -0.99 -9.67 17.63 -128.00 -2.26 -11.92 16 14 C -0.69 -1.02 4.99 21.22 0.11 -0.92 16 15 C -0.07 0.12 9.75 66.72 0.65 0.77 16 16 S 0.13 0.09 20.58 -56.49 -1.16 -1.08 16 17 C -0.20 -0.52 5.76 24.59 0.14 -0.38 16 18 C -0.05 0.10 2.95 71.23 0.21 0.31 16 19 O -0.56 1.11 12.83 -148.98 -1.91 -0.80 16 20 Si 0.75 -2.94 30.97 68.60 2.12 -0.82 16 21 C -0.05 -0.18 9.56 21.22 0.20 0.03 16 22 C -0.15 0.76 5.28 30.63 0.16 0.92 16 23 C -0.11 0.87 5.10 30.45 0.16 1.02 16 24 C 0.53 0.07 6.53 87.77 0.57 0.64 16 25 O -0.47 -1.86 13.94 -2.90 -0.04 -1.90 16 26 H 0.09 -0.04 7.45 -2.39 -0.02 -0.06 16 27 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.45 -4.49 8.96 -92.71 -0.83 -5.33 16 30 H 0.12 -1.67 8.14 -2.38 -0.02 -1.68 16 31 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 33 H 0.08 -0.26 6.11 -2.39 -0.01 -0.27 16 34 H 0.11 -1.05 7.50 -2.38 -0.02 -1.07 16 35 H 0.43 -2.11 8.84 -96.74 -0.85 -2.97 16 36 H 0.21 -1.69 8.00 -2.91 -0.02 -1.71 16 37 H 0.10 -0.59 7.96 -2.39 -0.02 -0.61 16 38 H 0.41 -5.03 8.74 -74.06 -0.65 -5.68 16 39 H -0.27 -0.21 7.11 99.48 0.71 0.50 16 40 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 41 H 0.16 0.55 7.96 -2.91 -0.02 0.53 16 42 H 0.08 -0.07 6.11 -2.39 -0.01 -0.08 16 43 H 0.08 -0.37 6.16 -2.39 -0.01 -0.39 16 44 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 45 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -31.66 388.86 -7.36 -39.02 By element: Atomic # 1 Polarization: -21.75 SS G_CDS: -1.20 Total: -22.95 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.58 Total: 7.95 kcal Atomic # 7 Polarization: 6.25 SS G_CDS: -5.93 Total: 0.32 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -6.45 Total: -29.18 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: 2.12 Total: -0.82 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.49 Total: 5.66 kcal Total: -31.66 -7.36 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849356_15065232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.741 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds