Wall clock time and date at job start Tue Mar 9 2021 13:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47483 * 81.18681 * 3 2 1 5 5 C 1.53006 * 109.47211 * 201.18377 * 3 2 1 6 6 C 1.52995 * 109.47355 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46966 * 300.00105 * 6 5 3 8 8 H 1.09007 * 109.46948 * 299.99664 * 7 6 5 9 9 C 1.53003 * 109.47067 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.46986 * 64.99756 * 9 7 6 11 11 S 1.65608 * 119.99853 * 165.00309 * 10 9 7 12 12 O 1.42104 * 106.39844 * 311.45907 * 11 10 9 13 13 O 1.42103 * 106.40157 * 178.54090 * 11 10 9 14 14 C 1.76201 * 107.21846 * 64.99774 * 11 10 9 15 15 C 1.33386 * 122.53614 * 90.02441 * 14 11 10 16 16 S 1.75891 * 109.59176 * 179.74952 * 15 14 11 17 17 C 1.75886 * 90.96733 * 0.23276 * 16 15 14 18 18 C 1.50705 * 125.20294 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47285 * 119.96782 * 18 17 16 20 20 Si 1.86301 * 109.46882 * 359.96989 * 18 17 16 21 21 C 1.33384 * 109.59693 * 359.97438 * 17 16 15 22 22 C 1.53000 * 109.47452 * 59.99920 * 7 6 5 23 23 C 1.52995 * 109.47100 * 299.99998 * 22 7 6 24 24 H 4.18744 * 15.04045 * 0.02562 * 4 2 1 25 25 H 1.09004 * 109.46823 * 300.00490 * 5 3 2 26 26 H 1.09000 * 109.46650 * 59.99793 * 5 3 2 27 27 H 1.09002 * 109.47176 * 179.97438 * 6 5 3 28 28 H 1.08995 * 109.47406 * 59.99482 * 6 5 3 29 29 H 1.08999 * 109.47039 * 304.99651 * 9 7 6 30 30 H 1.09000 * 109.47157 * 184.99486 * 9 7 6 31 31 H 0.96997 * 120.00344 * 344.99649 * 10 9 7 32 32 H 1.08002 * 125.20849 * 0.02562 * 15 14 11 33 33 H 1.08997 * 109.47108 * 239.97276 * 18 17 16 34 34 H 0.96701 * 113.99793 * 180.02562 * 19 18 17 35 35 H 1.48496 * 110.00260 * 298.68555 * 20 18 17 36 36 H 1.48508 * 109.99936 * 60.00201 * 20 18 17 37 37 H 1.07997 * 122.54195 * 179.97438 * 21 17 16 38 38 H 1.09000 * 109.46622 * 60.00084 * 22 7 6 39 39 H 1.08992 * 109.47179 * 179.97438 * 22 7 6 40 40 H 1.08992 * 109.47236 * 179.97438 * 23 22 7 41 41 H 1.08995 * 109.47406 * 300.00328 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.1566 -1.0155 5 6 3.1554 1.3460 0.5213 6 6 4.6854 1.3469 0.5207 7 6 5.1964 0.2231 1.4245 8 1 4.8334 0.3803 2.4403 9 6 6.7264 0.2244 1.4245 10 7 7.2137 1.4642 2.0342 11 16 8.7957 1.5878 2.5080 12 8 9.0812 0.4179 3.2623 13 8 8.9593 2.9028 3.0213 14 6 9.7847 1.4951 1.0526 15 6 10.1329 2.5753 0.3519 16 16 11.1202 2.0941 -1.0220 17 6 10.9950 0.4024 -0.5574 18 6 11.6264 -0.7502 -1.2951 19 8 12.5295 -1.4352 -0.4250 20 14 12.5579 -0.1052 -2.7740 21 6 10.2567 0.2955 0.5483 22 6 4.6871 -1.1222 0.9033 23 6 3.1571 -1.1231 0.9039 24 1 -1.0500 0.0004 -0.0003 25 1 2.7917 2.1465 -0.1229 26 1 2.7920 1.5032 1.5368 27 1 5.0483 2.3055 0.8916 28 1 5.0485 1.1897 -0.4949 29 1 7.0898 0.1566 0.3991 30 1 7.0906 -0.6292 1.9962 31 1 6.6097 2.2126 2.1604 32 1 9.8552 3.5906 0.5937 33 1 10.8492 -1.4385 -1.6272 34 1 12.9735 -2.1904 -0.8346 35 1 11.6244 0.5819 -3.7022 36 1 13.6206 0.8346 -2.3346 37 1 10.0455 -0.6546 1.0163 38 1 5.0502 -1.2793 -0.1124 39 1 5.0515 -1.9227 1.5469 40 1 2.7942 -2.0813 0.5322 41 1 2.7940 -0.9659 1.9195 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850116_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:50 Heat of formation + Delta-G solvation = -28.469661 kcal Electronic energy + Delta-G solvation = -25285.358456 eV Core-core repulsion = 21579.563889 eV Total energy + Delta-G solvation = -3705.794567 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.079 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.30321 -39.44237 -38.21978 -37.61263 -36.84404 -36.75542 -34.06559 -32.01670 -31.93460 -31.17818 -27.28209 -26.71905 -24.89300 -23.83427 -22.95746 -21.24335 -21.02220 -20.14529 -19.13912 -19.06521 -18.52080 -18.43053 -17.84521 -17.14577 -16.58775 -16.31179 -15.89347 -15.70564 -15.42370 -15.38294 -15.11891 -14.53532 -14.43131 -14.28023 -14.18725 -14.10743 -14.02430 -13.42518 -13.29383 -13.10571 -13.00857 -12.92773 -12.90316 -12.61043 -12.57659 -12.23795 -12.21698 -11.82686 -11.72642 -11.65922 -11.54046 -10.96880 -10.86679 -10.69509 -10.59024 -10.17521 -9.88592 -5.38232 -0.74632 -0.50692 0.29603 0.55743 0.92583 1.09505 1.43686 1.75646 1.91187 1.94078 2.06027 2.72950 3.12747 3.24825 3.36879 3.56221 3.59250 3.63588 3.68109 3.80889 3.98168 4.10943 4.14418 4.17801 4.25533 4.30641 4.31971 4.38996 4.40176 4.49619 4.60610 4.65343 4.77251 4.84998 4.86732 4.96165 5.04224 5.04237 5.06427 5.10296 5.20255 5.23308 5.36727 5.83879 6.43752 6.72510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.020 3.980 4 H 0.091 0.909 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.096 4.096 8 H 0.084 0.916 9 C 0.118 3.882 10 N -1.114 6.114 11 S 2.711 3.289 12 O -0.947 6.947 13 O -0.955 6.955 14 C -0.686 4.686 15 C -0.079 4.079 16 S 0.136 5.864 17 C -0.183 4.183 18 C -0.035 4.035 19 O -0.541 6.541 20 Si 0.671 3.329 21 C -0.040 4.040 22 C -0.114 4.114 23 C -0.110 4.110 24 H 0.217 0.783 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.419 0.581 32 H 0.187 0.813 33 H 0.087 0.913 34 H 0.386 0.614 35 H -0.238 1.238 36 H -0.235 1.235 37 H 0.159 0.841 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -3.047 -6.119 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.002 3.998 4 H 0.109 0.891 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.116 4.116 8 H 0.103 0.897 9 C -0.008 4.008 10 N -0.876 5.876 11 S 2.797 3.203 12 O -0.936 6.936 13 O -0.946 6.946 14 C -0.785 4.785 15 C -0.218 4.218 16 S 0.399 5.601 17 C -0.300 4.300 18 C -0.148 4.148 19 O -0.348 6.348 20 Si 0.570 3.430 21 C -0.069 4.069 22 C -0.152 4.152 23 C -0.147 4.147 24 H 0.233 0.767 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.255 0.745 32 H 0.204 0.796 33 H 0.105 0.895 34 H 0.235 0.765 35 H -0.162 1.162 36 H -0.159 1.159 37 H 0.177 0.823 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.098 -1.160 -6.566 6.668 hybrid contribution -1.396 -0.384 0.697 1.607 sum -1.495 -1.544 -5.869 6.250 Atomic orbital electron populations 1.24988 0.96025 1.00398 1.00819 1.23068 0.94320 1.00689 1.00544 1.18353 0.84314 0.96342 1.00745 0.89077 1.21555 0.95294 0.95945 1.02058 1.21636 0.95076 0.98427 1.00258 1.21416 0.93143 0.96056 1.00977 0.89730 1.21442 0.95586 0.85589 0.98142 1.55546 1.28391 1.23814 1.79856 1.01598 0.72179 0.73614 0.72950 1.93610 1.83687 1.50010 1.66331 1.93615 1.85303 1.38648 1.76995 1.30083 1.23432 0.98601 1.26356 1.25918 0.97614 1.02417 0.95829 1.84486 1.48808 1.00103 1.26671 1.23702 1.07017 0.96504 1.02820 1.23978 0.96684 0.94116 1.00010 1.86529 1.59689 1.48101 1.40491 0.94743 0.83133 0.86228 0.78894 1.19606 0.95651 0.97718 0.93876 1.21553 0.95177 0.96401 1.02083 1.21539 0.95184 0.97939 1.00065 0.76655 0.91350 0.91304 0.91364 0.91250 0.91410 0.89715 0.74481 0.79592 0.89536 0.76547 1.16229 1.15863 0.82332 0.91194 0.90799 0.91191 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.19 19.25 29.55 0.57 0.38 16 2 C -0.19 -0.24 12.56 -37.13 -0.47 -0.70 16 3 C 0.02 -0.02 2.56 -93.40 -0.24 -0.26 16 4 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 5 C -0.11 0.19 5.16 -26.73 -0.14 0.06 16 6 C -0.12 0.35 5.08 -26.73 -0.14 0.22 16 7 C -0.10 0.28 2.29 -90.62 -0.21 0.07 16 8 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 9 C 0.12 -0.30 5.61 -4.04 -0.02 -0.32 16 10 N -1.11 1.88 5.88 -10.61 -0.06 1.82 16 11 S 2.71 4.37 5.80 -107.50 -0.62 3.75 16 12 O -0.95 -4.43 17.11 -57.17 -0.98 -5.41 16 13 O -0.96 -4.10 17.64 -57.17 -1.01 -5.11 16 14 C -0.69 -0.94 5.86 -41.21 -0.24 -1.18 16 15 C -0.08 -0.06 10.70 29.04 0.31 0.25 16 16 S 0.14 0.17 20.58 -107.50 -2.21 -2.04 16 17 C -0.18 -0.28 5.76 -36.00 -0.21 -0.49 16 18 C -0.03 0.03 2.95 36.01 0.11 0.14 16 19 O -0.54 0.21 12.83 -35.23 -0.45 -0.25 16 20 Si 0.67 -1.22 30.97 -169.99 -5.26 -6.48 16 21 C -0.04 -0.07 9.56 -41.21 -0.39 -0.46 16 22 C -0.11 0.34 5.21 -26.73 -0.14 0.20 16 23 C -0.11 0.19 5.16 -26.73 -0.14 0.05 16 24 H 0.22 -0.42 7.80 -54.09 -0.42 -0.84 16 25 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 26 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 27 H 0.07 -0.24 6.90 -51.93 -0.36 -0.60 16 28 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 29 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 30 H 0.08 -0.19 7.75 -51.93 -0.40 -0.59 16 31 H 0.42 -1.36 7.41 -34.47 -0.26 -1.61 16 32 H 0.19 -0.28 8.00 -52.49 -0.42 -0.70 16 33 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 34 H 0.39 -2.18 8.74 45.56 0.40 -1.78 16 35 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 36 H -0.24 -0.34 7.11 56.52 0.40 0.06 16 37 H 0.16 0.14 7.97 -52.49 -0.42 -0.28 16 38 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 39 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 40 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 LS Contribution 366.69 15.07 5.53 5.53 Total: 0.00 -10.65 366.69 -12.13 -22.79 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -5.72 Total: -12.55 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.34 Total: -2.04 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -0.06 Total: 1.82 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -2.44 Total: -10.77 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.26 Total: -6.48 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.84 Total: 1.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -10.65 -12.13 -22.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850116_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.684 kcal (2) G-P(sol) polarization free energy of solvation -10.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds