Wall clock time and date at job start Tue Mar 9 2021 13:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47483 * 81.18681 * 3 2 1 5 5 C 1.53006 * 109.47211 * 201.18377 * 3 2 1 6 6 C 1.52995 * 109.47355 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.46966 * 300.00105 * 6 5 3 8 8 H 1.09007 * 109.46948 * 299.99664 * 7 6 5 9 9 C 1.53003 * 109.47067 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.46986 * 64.99756 * 9 7 6 11 11 S 1.65608 * 119.99853 * 165.00309 * 10 9 7 12 12 O 1.42104 * 106.39844 * 311.45907 * 11 10 9 13 13 O 1.42103 * 106.40157 * 178.54090 * 11 10 9 14 14 C 1.76201 * 107.21846 * 64.99774 * 11 10 9 15 15 C 1.33386 * 122.53614 * 90.02441 * 14 11 10 16 16 S 1.75891 * 109.59176 * 179.74952 * 15 14 11 17 17 C 1.75886 * 90.96733 * 0.23276 * 16 15 14 18 18 C 1.50705 * 125.20294 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47285 * 119.96782 * 18 17 16 20 20 Si 1.86301 * 109.46882 * 359.96989 * 18 17 16 21 21 C 1.33384 * 109.59693 * 359.97438 * 17 16 15 22 22 C 1.53000 * 109.47452 * 59.99920 * 7 6 5 23 23 C 1.52995 * 109.47100 * 299.99998 * 22 7 6 24 24 H 4.18744 * 15.04045 * 0.02562 * 4 2 1 25 25 H 1.09004 * 109.46823 * 300.00490 * 5 3 2 26 26 H 1.09000 * 109.46650 * 59.99793 * 5 3 2 27 27 H 1.09002 * 109.47176 * 179.97438 * 6 5 3 28 28 H 1.08995 * 109.47406 * 59.99482 * 6 5 3 29 29 H 1.08999 * 109.47039 * 304.99651 * 9 7 6 30 30 H 1.09000 * 109.47157 * 184.99486 * 9 7 6 31 31 H 0.96997 * 120.00344 * 344.99649 * 10 9 7 32 32 H 1.08002 * 125.20849 * 0.02562 * 15 14 11 33 33 H 1.08997 * 109.47108 * 239.97276 * 18 17 16 34 34 H 0.96701 * 113.99793 * 180.02562 * 19 18 17 35 35 H 1.48496 * 110.00260 * 298.68555 * 20 18 17 36 36 H 1.48508 * 109.99936 * 60.00201 * 20 18 17 37 37 H 1.07997 * 122.54195 * 179.97438 * 21 17 16 38 38 H 1.09000 * 109.46622 * 60.00084 * 22 7 6 39 39 H 1.08992 * 109.47179 * 179.97438 * 22 7 6 40 40 H 1.08992 * 109.47236 * 179.97438 * 23 22 7 41 41 H 1.08995 * 109.47406 * 300.00328 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.1566 -1.0155 5 6 3.1554 1.3460 0.5213 6 6 4.6854 1.3469 0.5207 7 6 5.1964 0.2231 1.4245 8 1 4.8334 0.3803 2.4403 9 6 6.7264 0.2244 1.4245 10 7 7.2137 1.4642 2.0342 11 16 8.7957 1.5878 2.5080 12 8 9.0812 0.4179 3.2623 13 8 8.9593 2.9028 3.0213 14 6 9.7847 1.4951 1.0526 15 6 10.1329 2.5753 0.3519 16 16 11.1202 2.0941 -1.0220 17 6 10.9950 0.4024 -0.5574 18 6 11.6264 -0.7502 -1.2951 19 8 12.5295 -1.4352 -0.4250 20 14 12.5579 -0.1052 -2.7740 21 6 10.2567 0.2955 0.5483 22 6 4.6871 -1.1222 0.9033 23 6 3.1571 -1.1231 0.9039 24 1 -1.0500 0.0004 -0.0003 25 1 2.7917 2.1465 -0.1229 26 1 2.7920 1.5032 1.5368 27 1 5.0483 2.3055 0.8916 28 1 5.0485 1.1897 -0.4949 29 1 7.0898 0.1566 0.3991 30 1 7.0906 -0.6292 1.9962 31 1 6.6097 2.2126 2.1604 32 1 9.8552 3.5906 0.5937 33 1 10.8492 -1.4385 -1.6272 34 1 12.9735 -2.1904 -0.8346 35 1 11.6244 0.5819 -3.7022 36 1 13.6206 0.8346 -2.3346 37 1 10.0455 -0.6546 1.0163 38 1 5.0502 -1.2793 -0.1124 39 1 5.0515 -1.9227 1.5469 40 1 2.7942 -2.0813 0.5322 41 1 2.7940 -0.9659 1.9195 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850116_15065232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:50 Heat of formation + Delta-G solvation = -30.052902 kcal Electronic energy + Delta-G solvation = -25285.427111 eV Core-core repulsion = 21579.563889 eV Total energy + Delta-G solvation = -3705.863221 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.079 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13608 -39.46005 -38.45276 -37.53862 -37.07719 -36.67478 -34.01876 -32.02514 -31.75275 -31.09852 -27.27230 -26.58368 -24.92849 -23.65169 -22.82729 -21.26737 -20.84945 -20.19091 -19.15531 -19.01566 -18.52830 -18.41569 -17.91927 -17.14791 -16.48187 -16.25205 -15.92290 -15.62339 -15.42606 -15.22228 -14.97456 -14.53024 -14.35179 -14.27171 -14.19012 -14.09187 -14.00925 -13.40779 -13.33845 -13.22394 -13.09864 -12.98472 -12.90735 -12.64760 -12.47370 -12.21144 -12.04286 -11.91915 -11.60412 -11.51503 -11.41013 -10.92102 -10.77486 -10.61985 -10.48168 -10.18616 -9.94566 -5.25025 -0.84420 -0.57777 0.24790 0.50283 0.89123 1.17696 1.53564 1.85327 1.87108 1.89596 2.03376 2.62433 3.13087 3.35773 3.41156 3.70621 3.75531 3.79831 3.80831 3.87020 4.10398 4.16375 4.26813 4.34008 4.40899 4.48720 4.50230 4.52818 4.57013 4.58606 4.72121 4.80583 4.85269 4.95726 4.99041 5.01404 5.15113 5.21288 5.24854 5.25025 5.32991 5.42551 5.56512 6.01723 6.69688 6.83305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.209 4.209 3 C 0.018 3.982 4 H 0.098 0.902 5 C -0.108 4.108 6 C -0.114 4.114 7 C -0.091 4.091 8 H 0.080 0.920 9 C 0.113 3.887 10 N -1.102 6.102 11 S 2.730 3.270 12 O -0.980 6.980 13 O -0.985 6.985 14 C -0.689 4.689 15 C -0.078 4.078 16 S 0.118 5.882 17 C -0.195 4.195 18 C -0.043 4.043 19 O -0.563 6.563 20 Si 0.753 3.247 21 C -0.051 4.051 22 C -0.111 4.111 23 C -0.106 4.106 24 H 0.236 0.764 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.428 0.572 32 H 0.205 0.795 33 H 0.115 0.885 34 H 0.407 0.593 35 H -0.263 1.263 36 H -0.284 1.284 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -3.675 -6.937 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.209 4.209 3 C 0.000 4.000 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.111 4.111 8 H 0.098 0.902 9 C -0.012 4.012 10 N -0.866 5.866 11 S 2.817 3.183 12 O -0.970 6.970 13 O -0.975 6.975 14 C -0.789 4.789 15 C -0.216 4.216 16 S 0.381 5.619 17 C -0.312 4.312 18 C -0.155 4.155 19 O -0.373 6.373 20 Si 0.657 3.343 21 C -0.079 4.079 22 C -0.149 4.149 23 C -0.144 4.144 24 H 0.252 0.748 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.266 0.734 32 H 0.222 0.778 33 H 0.133 0.867 34 H 0.260 0.740 35 H -0.189 1.189 36 H -0.211 1.211 37 H 0.182 0.818 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.194 -1.818 -7.373 7.597 hybrid contribution -1.386 -0.176 0.921 1.673 sum -1.580 -1.994 -6.452 6.936 Atomic orbital electron populations 1.25682 0.97019 1.00295 1.00705 1.23764 0.95443 1.00898 1.00759 1.18484 0.83274 0.96966 1.01305 0.88413 1.21517 0.96234 0.95390 1.01406 1.21637 0.93990 0.98780 1.00752 1.21361 0.92718 0.96193 1.00825 0.90173 1.21610 0.95763 0.84908 0.98955 1.55244 1.27074 1.24590 1.79723 1.00754 0.72611 0.72212 0.72728 1.93566 1.84563 1.51059 1.67785 1.93569 1.86064 1.39877 1.78035 1.30003 1.23822 0.98899 1.26139 1.26180 0.96944 1.03197 0.95287 1.84575 1.49204 1.00819 1.27267 1.24087 1.07013 0.97062 1.03077 1.24179 0.97592 0.94173 0.99597 1.86476 1.60090 1.49305 1.41478 0.93822 0.79506 0.84273 0.76732 1.19747 0.96024 0.98018 0.94143 1.21540 0.94082 0.96423 1.02854 1.21500 0.96104 0.97478 0.99328 0.74769 0.91762 0.92075 0.90617 0.90454 0.89763 0.89903 0.73392 0.77818 0.86713 0.74038 1.18885 1.21084 0.81846 0.90105 0.90414 0.91501 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.50 19.25 74.32 1.43 0.93 16 2 C -0.21 -0.64 12.56 31.12 0.39 -0.25 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.07 16 4 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 5 C -0.11 0.38 5.16 30.59 0.16 0.53 16 6 C -0.11 0.78 5.08 30.59 0.16 0.94 16 7 C -0.09 0.60 2.29 -10.79 -0.02 0.58 16 8 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 9 C 0.11 -0.67 5.61 86.38 0.48 -0.18 16 10 N -1.10 4.15 5.88 -187.49 -1.10 3.05 16 11 S 2.73 9.66 5.80 -56.49 -0.33 9.33 16 12 O -0.98 -9.81 17.11 -128.00 -2.19 -12.00 16 13 O -0.99 -8.97 17.64 -128.00 -2.26 -11.23 16 14 C -0.69 -1.91 5.86 21.22 0.12 -1.78 16 15 C -0.08 -0.11 10.70 66.72 0.71 0.60 16 16 S 0.12 0.33 20.58 -56.49 -1.16 -0.83 16 17 C -0.20 -0.55 5.76 24.59 0.14 -0.40 16 18 C -0.04 0.12 2.95 71.24 0.21 0.33 16 19 O -0.56 0.91 12.83 -148.98 -1.91 -1.00 16 20 Si 0.75 -2.92 30.97 68.60 2.12 -0.80 16 21 C -0.05 -0.16 9.56 21.22 0.20 0.04 16 22 C -0.11 0.75 5.21 30.59 0.16 0.91 16 23 C -0.11 0.37 5.16 30.60 0.16 0.53 16 24 H 0.24 -0.89 7.80 -4.42 -0.03 -0.93 16 25 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.08 -0.62 6.90 -2.39 -0.02 -0.63 16 28 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.08 -0.41 7.75 -2.39 -0.02 -0.43 16 31 H 0.43 -3.00 7.41 -96.75 -0.72 -3.71 16 32 H 0.20 -0.65 8.00 -2.91 -0.02 -0.68 16 33 H 0.12 -0.97 7.96 -2.39 -0.02 -0.99 16 34 H 0.41 -5.12 8.74 -74.06 -0.65 -5.77 16 35 H -0.26 -0.02 7.11 99.48 0.71 0.68 16 36 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 37 H 0.16 0.27 7.97 -2.91 -0.02 0.24 16 38 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.08 -0.56 8.14 -2.39 -0.02 -0.57 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -24.79 366.69 -2.83 -27.62 By element: Atomic # 1 Polarization: -16.55 SS G_CDS: -0.28 Total: -16.83 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.27 Total: 2.70 kcal Atomic # 7 Polarization: 4.15 SS G_CDS: -1.10 Total: 3.05 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -6.36 Total: -24.24 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.12 Total: -0.80 kcal Atomic # 16 Polarization: 9.99 SS G_CDS: -1.49 Total: 8.50 kcal Total: -24.79 -2.83 -27.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850116_15065232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.434 kcal (2) G-P(sol) polarization free energy of solvation -24.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds