Wall clock time and date at job start Tue Mar 9 2021 13:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00589 * 2 1 4 4 C 1.38740 * 120.03328 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.97407 * 0.02562 * 4 3 2 6 6 O 1.42897 * 109.47027 * 74.97757 * 5 4 3 7 7 Si 1.86299 * 109.47496 * 194.98025 * 5 4 3 8 8 C 1.38196 * 120.05609 * 180.02562 * 4 3 2 9 9 C 1.38156 * 120.11232 * 359.97438 * 8 4 3 10 10 C 1.38790 * 120.04871 * 0.04567 * 9 8 4 11 11 O 1.35900 * 120.02848 * 179.97438 * 10 9 8 12 12 S 1.52203 * 114.00214 * 89.99829 * 11 10 9 13 13 O 1.42103 * 104.27616 * 318.93263 * 12 11 10 14 14 O 1.42097 * 104.27829 * 191.07576 * 12 11 10 15 15 C 1.81400 * 104.44698 * 75.00215 * 12 11 10 16 16 C 1.53001 * 109.46768 * 180.02562 * 15 12 11 17 17 H 1.08999 * 112.91236 * 43.75113 * 16 15 12 18 18 C 1.53777 * 113.61307 * 175.00288 * 16 15 12 19 19 C 1.53787 * 87.08360 * 89.11409 * 18 16 15 20 20 O 1.42901 * 113.61417 * 270.80280 * 19 18 16 21 21 C 1.42905 * 113.99684 * 294.81739 * 20 19 18 22 22 C 1.52997 * 113.61536 * 139.98201 * 19 18 16 23 23 F 1.39900 * 109.46970 * 54.75702 * 22 19 18 24 24 F 1.39894 * 109.47087 * 174.76152 * 22 19 18 25 25 F 1.39905 * 109.47131 * 294.76412 * 22 19 18 26 26 C 1.53783 * 113.61368 * 272.49851 * 16 15 12 27 27 C 1.38616 * 119.95111 * 0.23219 * 10 9 8 28 28 H 1.08989 * 109.46961 * 59.99800 * 1 2 3 29 29 H 1.08998 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47049 * 299.99956 * 1 2 3 31 31 H 1.09003 * 109.46959 * 314.98376 * 5 4 3 32 32 H 0.96701 * 114.00107 * 179.97438 * 6 5 4 33 33 H 1.48496 * 110.00160 * 178.68281 * 7 5 4 34 34 H 1.48499 * 109.99759 * 300.00136 * 7 5 4 35 35 H 1.08002 * 119.94329 * 180.02562 * 8 4 3 36 36 H 1.07996 * 119.97497 * 180.02562 * 9 8 4 37 37 H 1.08997 * 109.46930 * 60.00389 * 15 12 11 38 38 H 1.08999 * 109.47205 * 300.00232 * 15 12 11 39 39 H 1.08999 * 113.61591 * 203.66531 * 18 16 15 40 40 H 1.09004 * 113.61406 * 334.48074 * 18 16 15 41 41 H 1.09003 * 109.47186 * 302.48311 * 21 20 19 42 42 H 1.08999 * 109.46890 * 62.48167 * 21 20 19 43 43 H 1.08997 * 109.46981 * 182.48213 * 21 20 19 44 44 H 1.08997 * 113.61399 * 25.43178 * 26 16 15 45 45 H 1.08994 * 113.61486 * 156.33686 * 26 16 15 46 46 H 1.08002 * 120.05723 * 179.74773 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4315 1.2841 -0.0005 5 6 4.2523 0.0202 -0.0017 6 8 4.2184 -0.5686 -1.3033 7 14 6.0138 0.4231 0.4518 8 6 4.0595 2.5151 0.0000 9 6 3.3099 3.6756 0.0005 10 6 1.9237 3.6076 0.0015 11 8 1.1868 4.7494 0.0025 12 16 0.8501 5.2702 -1.3874 13 8 2.0467 5.0840 -2.1308 14 8 0.3257 6.5706 -1.1568 15 6 -0.4506 4.1562 -1.9854 16 6 -0.8789 4.5806 -3.3916 17 1 -0.0348 4.8245 -4.0367 18 6 -1.8945 3.6257 -4.0407 19 6 -2.9952 4.4800 -3.3899 20 8 -3.3550 4.0464 -2.0766 21 6 -3.9599 2.7523 -2.0373 22 6 -4.2086 4.7084 -4.2934 23 9 -4.7077 3.4746 -4.7245 24 9 -5.2004 5.3889 -3.5792 25 9 -3.8270 5.4703 -5.4030 26 6 -1.9900 5.6437 -3.4026 27 6 1.2914 2.3741 0.0068 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8413 -0.6806 0.7249 32 1 4.7271 -1.3876 -1.3779 33 1 6.8266 -0.8192 0.4852 34 1 6.5856 1.3779 -0.5313 35 1 5.1382 2.5700 -0.0008 36 1 3.8030 4.6364 0.0005 37 1 -1.3078 4.2050 -1.3139 38 1 -0.0696 3.1353 -2.0146 39 1 -1.8973 3.6659 -5.1300 40 1 -1.8448 2.6074 -3.6549 41 1 -4.8474 2.7466 -2.6702 42 1 -3.2504 2.0084 -2.3997 43 1 -4.2434 2.5148 -1.0119 44 1 -2.0183 6.2550 -2.5005 45 1 -2.0188 6.2357 -4.3173 46 1 0.2128 2.3191 0.0117 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_197687_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:26 Heat of formation + Delta-G solvation = -286.425745 kcal Electronic energy + Delta-G solvation = -40506.148818 eV Core-core repulsion = 34657.485879 eV Total energy + Delta-G solvation = -5848.662940 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.23694 -48.78399 -48.66245 -42.47531 -41.65036 -40.86492 -38.64151 -38.30349 -37.55170 -37.44269 -37.18029 -32.73285 -31.99623 -31.51391 -28.72723 -28.58369 -27.92264 -27.04292 -26.95916 -24.04077 -23.80896 -23.34043 -21.83694 -20.89756 -20.11737 -19.73806 -19.54259 -19.32787 -18.93990 -18.71941 -18.60593 -17.90319 -17.44056 -17.38630 -17.19180 -16.90093 -16.69220 -16.38344 -15.98618 -15.90997 -15.73384 -15.58649 -15.51360 -15.44677 -15.36370 -15.13929 -14.92336 -14.84831 -14.75861 -14.48623 -14.26353 -14.25170 -14.15128 -13.78667 -13.51110 -13.50259 -13.36721 -13.26414 -13.18834 -13.16629 -12.98701 -12.85464 -12.56040 -12.42841 -12.33763 -12.24373 -12.18091 -11.83390 -11.59488 -10.98982 -10.53397 -10.31047 -9.51736 -5.04655 -1.19442 -0.24679 0.05258 0.91007 1.17090 1.46757 1.50785 1.85655 1.87265 1.97181 2.14770 2.37796 2.45408 2.52813 2.71057 2.77162 2.93492 3.12495 3.18683 3.25140 3.36927 3.41098 3.49235 3.61979 3.67781 3.82055 3.84806 3.94017 3.95808 3.97125 4.00615 4.06391 4.09127 4.18618 4.21502 4.30984 4.31760 4.37966 4.39154 4.48856 4.59523 4.65456 4.69282 4.74309 4.92529 5.02511 5.33456 5.48931 6.01127 6.39306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.296 6.296 3 C 0.173 3.827 4 C -0.087 4.087 5 C -0.068 4.068 6 O -0.530 6.530 7 Si 0.684 3.316 8 C -0.060 4.060 9 C -0.118 4.118 10 C 0.110 3.890 11 O -0.660 6.660 12 S 2.593 3.407 13 O -0.942 6.942 14 O -0.916 6.916 15 C -0.644 4.644 16 C -0.091 4.091 17 H 0.111 0.889 18 C -0.137 4.137 19 C 0.042 3.958 20 O -0.332 6.332 21 C 0.008 3.992 22 C 0.438 3.562 23 F -0.181 7.181 24 F -0.172 7.172 25 F -0.173 7.173 26 C -0.127 4.127 27 C -0.227 4.227 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.381 0.619 33 H -0.258 1.258 34 H -0.250 1.250 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -5.980 2.745 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.208 6.208 3 C 0.126 3.874 4 C -0.088 4.088 5 C -0.177 4.177 6 O -0.338 6.338 7 Si 0.585 3.415 8 C -0.078 4.078 9 C -0.138 4.138 10 C 0.069 3.931 11 O -0.619 6.619 12 S 2.688 3.312 13 O -0.940 6.940 14 O -0.914 6.914 15 C -0.770 4.770 16 C -0.111 4.111 17 H 0.129 0.871 18 C -0.175 4.175 19 C -0.001 4.001 20 O -0.250 6.250 21 C -0.088 4.088 22 C 0.383 3.617 23 F -0.162 7.162 24 F -0.154 7.154 25 F -0.155 7.155 26 C -0.163 4.163 27 C -0.248 4.248 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.229 0.771 33 H -0.182 1.182 34 H -0.174 1.174 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.590 -4.921 2.736 5.851 hybrid contribution -1.633 -1.384 -1.227 2.468 sum -0.043 -6.306 1.509 6.484 Atomic orbital electron populations 1.23231 0.77856 1.04941 1.01589 1.86203 1.21635 1.25327 1.87680 1.18375 0.91185 0.83880 0.93928 1.18843 0.90501 0.94618 1.04868 1.24652 1.09830 0.94783 0.88462 1.86602 1.74360 1.43544 1.29279 0.95095 0.74101 0.82787 0.89524 1.20923 1.00784 0.90033 0.96065 1.21186 0.91248 1.00562 1.00819 1.17709 0.89594 0.80840 1.04996 1.85751 1.72673 1.45965 1.57512 1.05627 0.76289 0.75957 0.73355 1.93685 1.42326 1.86198 1.71839 1.93670 1.81328 1.34109 1.82276 1.30866 1.20991 1.17953 1.07209 1.21703 0.98760 0.97471 0.93141 0.87056 1.23585 0.92312 0.99486 1.02108 1.23938 0.89315 1.01526 0.85300 1.88053 1.79595 1.35326 1.22018 1.23174 0.97665 0.83527 1.04429 1.21116 0.85794 0.74337 0.80439 1.93188 1.89117 1.43214 1.90727 1.93228 1.64191 1.80195 1.77745 1.93189 1.90966 1.76245 1.55075 1.23502 0.90632 0.95049 1.07156 1.21322 1.01400 0.90841 1.11223 0.92485 0.87415 0.92004 0.90084 0.77139 1.18240 1.17449 0.83102 0.83274 0.82642 0.84219 0.86797 0.88488 0.92519 0.92705 0.87913 0.87163 0.85560 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.30 0.06 9.82 -19.42 -0.19 -0.13 16 3 C 0.17 0.06 6.66 -39.24 -0.26 -0.20 16 4 C -0.09 -0.04 5.31 -104.45 -0.55 -0.60 16 5 C -0.07 0.05 2.36 36.01 0.09 0.13 16 6 O -0.53 -0.30 12.86 -35.23 -0.45 -0.75 16 7 Si 0.68 -1.35 30.19 -169.99 -5.13 -6.48 16 8 C -0.06 0.00 8.65 -39.63 -0.34 -0.34 16 9 C -0.12 -0.10 9.05 -39.41 -0.36 -0.46 16 10 C 0.11 0.12 4.79 -39.24 -0.19 -0.06 16 11 O -0.66 -1.00 10.05 -51.75 -0.52 -1.52 16 12 S 2.59 3.92 5.16 -107.50 -0.55 3.37 16 13 O -0.94 -3.36 16.26 -67.04 -1.09 -4.45 16 14 O -0.92 -4.14 18.09 -67.04 -1.21 -5.35 16 15 C -0.64 1.29 5.05 37.16 0.19 1.48 16 16 C -0.09 0.18 3.84 -89.81 -0.35 -0.17 16 17 H 0.11 -0.34 8.13 -51.93 -0.42 -0.76 16 18 C -0.14 0.36 6.52 -25.92 -0.17 0.19 16 19 C 0.04 -0.03 0.85 -89.80 -0.08 -0.11 16 20 O -0.33 0.21 8.36 -35.23 -0.29 -0.09 16 21 C 0.01 -0.02 10.43 101.05 1.05 1.03 16 22 C 0.44 0.35 2.51 37.16 0.09 0.45 16 23 F -0.18 -0.16 15.24 2.25 0.03 -0.13 16 24 F -0.17 -0.44 17.09 2.25 0.04 -0.40 16 25 F -0.17 -0.17 15.82 2.25 0.04 -0.13 16 26 C -0.13 0.14 6.89 -25.92 -0.18 -0.04 16 27 C -0.23 0.12 7.45 -39.29 -0.29 -0.18 16 28 H 0.06 -0.28 7.67 -51.94 -0.40 -0.68 16 29 H 0.11 -0.55 8.14 -51.93 -0.42 -0.97 16 30 H 0.06 -0.30 7.65 -51.93 -0.40 -0.69 16 31 H 0.08 -0.15 7.82 -51.93 -0.41 -0.55 16 32 H 0.38 -1.27 8.74 45.56 0.40 -0.87 16 33 H -0.26 -0.03 7.11 56.52 0.40 0.37 16 34 H -0.25 -0.14 6.75 56.52 0.38 0.24 16 35 H 0.15 -0.29 4.89 -52.49 -0.26 -0.55 16 36 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 37 H 0.16 -0.44 6.13 -51.93 -0.32 -0.76 16 38 H 0.14 -0.56 6.62 -51.92 -0.34 -0.90 16 39 H 0.11 -0.40 8.06 -51.93 -0.42 -0.82 16 40 H 0.10 -0.38 6.70 -51.93 -0.35 -0.73 16 41 H 0.06 -0.10 6.25 -51.93 -0.32 -0.42 16 42 H 0.05 -0.24 6.76 -51.93 -0.35 -0.59 16 43 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 44 H 0.11 -0.06 8.10 -51.93 -0.42 -0.48 16 45 H 0.13 -0.30 7.01 -51.93 -0.36 -0.66 16 46 H 0.15 -0.51 5.76 -52.49 -0.30 -0.81 16 LS Contribution 393.60 15.07 5.93 5.93 Total: 0.00 -11.12 393.60 -8.92 -20.04 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: -5.16 Total: -11.96 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.35 Total: 2.05 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -3.76 Total: -12.29 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.11 Total: -0.66 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.13 Total: -6.48 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -0.55 Total: 3.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -11.12 -8.92 -20.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_197687_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.382 kcal (2) G-P(sol) polarization free energy of solvation -11.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds