Wall clock time and date at job start Tue Mar 9 2021 13:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36005 * 116.99434 * 2 1 4 4 C 1.38519 * 120.06970 * 0.02562 * 3 2 1 5 5 C 1.38274 * 120.00928 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.92838 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47118 * 16.35880 * 6 5 4 8 8 Si 1.86302 * 109.47073 * 256.35814 * 6 5 4 9 9 H 1.48499 * 109.47288 * 185.42159 * 8 6 5 10 10 H 1.48500 * 109.47194 * 305.42233 * 8 6 5 11 11 H 1.48501 * 109.47068 * 65.42261 * 8 6 5 12 12 C 1.38285 * 120.14190 * 359.97438 * 5 4 3 13 13 Br 1.89095 * 119.94178 * 180.02562 * 12 5 4 14 14 C 1.38363 * 120.12541 * 359.97438 * 12 5 4 15 15 C 1.38523 * 119.98978 * 0.02562 * 14 12 5 16 16 O 1.35988 * 120.06879 * 180.02562 * 15 14 12 17 17 S 1.52202 * 113.99804 * 269.97502 * 16 15 14 18 18 O 1.42107 * 104.27379 * 191.07401 * 17 16 15 19 19 O 1.42095 * 104.27861 * 318.92528 * 17 16 15 20 20 C 1.81397 * 104.44921 * 75.00162 * 17 16 15 21 21 C 1.52997 * 109.46794 * 179.97438 * 20 17 16 22 22 C 1.53008 * 109.46935 * 180.02562 * 21 20 17 23 23 Si 1.86298 * 109.46982 * 180.02562 * 22 21 20 24 24 C 1.86300 * 109.47222 * 60.00378 * 23 22 21 25 25 C 1.86309 * 109.47016 * 179.97438 * 23 22 21 26 26 C 1.86290 * 109.47321 * 299.99708 * 23 22 21 27 27 H 1.08992 * 109.47358 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.46776 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 299.99232 * 1 2 3 30 30 H 1.07998 * 119.99010 * 359.69661 * 4 3 2 31 31 H 1.09001 * 109.47152 * 136.36511 * 6 5 4 32 32 H 0.96709 * 113.99659 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.00730 * 180.02562 * 14 12 5 34 34 H 1.08992 * 109.47079 * 299.99723 * 20 17 16 35 35 H 1.08997 * 109.47156 * 59.99987 * 20 17 16 36 36 H 1.09002 * 109.47294 * 299.99731 * 21 20 17 37 37 H 1.08997 * 109.47095 * 60.00175 * 21 20 17 38 38 H 1.09002 * 109.46873 * 299.99944 * 22 21 20 39 39 H 1.08997 * 109.47123 * 60.00147 * 22 21 20 40 40 H 1.08992 * 109.47496 * 59.99580 * 24 23 22 41 41 H 1.08997 * 109.47024 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46943 * 299.99690 * 24 23 22 43 43 H 1.09004 * 109.46736 * 59.99879 * 25 23 22 44 44 H 1.08993 * 109.47217 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.46842 * 300.00547 * 25 23 22 46 46 H 1.09004 * 109.47338 * 60.00299 * 26 23 22 47 47 H 1.09006 * 109.47303 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47365 * 300.00228 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2933 2.3744 0.0005 5 6 1.9222 3.6059 0.0011 6 6 1.1010 4.8695 0.0011 7 8 -0.2426 4.5645 0.3799 8 14 1.1107 5.6164 -1.7057 9 1 0.4129 6.9269 -1.6765 10 1 2.5133 5.8122 -2.1524 11 1 0.4134 4.7053 -2.6486 12 6 3.3030 3.6803 0.0016 13 35 4.1572 5.3674 0.0031 14 6 4.0609 2.5227 0.0021 15 6 3.4364 1.2863 0.0016 16 8 4.1797 0.1475 0.0027 17 16 4.5192 -0.3714 -1.3873 18 8 5.0502 -1.6692 -1.1568 19 8 3.3216 -0.1915 -2.1307 20 6 5.8141 0.7494 -1.9851 21 6 6.2455 0.3265 -3.3908 22 6 7.3382 1.2715 -3.8948 23 14 7.8630 0.7571 -5.6067 24 6 6.3977 0.8339 -6.7547 25 6 9.1930 1.9083 -6.2207 26 6 8.5225 -0.9844 -5.5571 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2147 2.3189 -0.0040 31 1 1.5264 5.5793 0.7106 32 1 -0.8294 5.3329 0.4010 33 1 5.1392 2.5831 0.0030 34 1 5.4278 1.7681 -2.0143 35 1 6.6715 0.7050 -1.3136 36 1 6.6320 -0.6922 -3.3612 37 1 5.3883 0.3706 -4.0625 38 1 6.9522 2.2905 -3.9243 39 1 8.1954 1.2270 -3.2229 40 1 6.0118 1.8528 -6.7838 41 1 6.7046 0.5325 -7.7562 42 1 5.6192 0.1607 -6.3957 43 1 10.0504 1.8638 -5.5491 44 1 9.4997 1.6076 -7.2225 45 1 8.8067 2.9271 -6.2498 46 1 7.7441 -1.6577 -5.1980 47 1 8.8291 -1.2855 -6.5588 48 1 9.3798 -1.0293 -4.8855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2162986_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:13 Heat of formation + Delta-G solvation = -190.279870 kcal Electronic energy + Delta-G solvation = -31935.338131 eV Core-core repulsion = 27481.627543 eV Total energy + Delta-G solvation = -4453.710588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56405 -40.34987 -39.31594 -38.13455 -37.57919 -37.02093 -35.96410 -33.25745 -32.60806 -30.42789 -29.73387 -28.73577 -28.50977 -28.43839 -28.32651 -26.96673 -23.98494 -23.50284 -22.79704 -21.53706 -19.62716 -19.32482 -18.88297 -18.49344 -18.09559 -17.29942 -16.94889 -16.80604 -16.55660 -16.41406 -15.88370 -15.58167 -15.43248 -14.95408 -14.86105 -14.57137 -14.33079 -14.23598 -14.18197 -14.05611 -14.03282 -13.69802 -13.63580 -13.59809 -13.28371 -13.19016 -13.12090 -13.11972 -13.10070 -13.06240 -13.04354 -12.86296 -12.77084 -12.53666 -12.32598 -12.09430 -11.98963 -11.84108 -11.51747 -11.29969 -10.92246 -10.85799 -10.82749 -10.56394 -10.04394 -9.41787 -1.06878 -0.31643 -0.27910 0.24055 0.91378 1.07161 1.30146 1.38191 1.70456 1.80180 1.82006 1.83401 1.91924 2.06155 2.55534 2.67362 2.75305 2.95892 3.21143 3.33281 3.47560 3.58637 3.70112 3.77207 4.00262 4.01736 4.06734 4.11391 4.17674 4.25145 4.26965 4.43641 4.50969 4.54074 4.63344 4.68737 4.70031 4.73431 4.74217 4.75503 4.76090 4.78054 4.84669 4.90530 5.11288 5.24277 5.44358 5.52522 5.54740 5.98728 6.28462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.293 6.293 3 C 0.183 3.817 4 C -0.169 4.169 5 C 0.010 3.990 6 C -0.088 4.088 7 O -0.543 6.543 8 Si 0.916 3.084 9 H -0.237 1.237 10 H -0.222 1.222 11 H -0.240 1.240 12 C -0.125 4.125 13 Br -0.021 7.021 14 C -0.058 4.058 15 C 0.033 3.967 16 O -0.647 6.647 17 S 2.580 3.420 18 O -0.922 6.922 19 O -0.941 6.941 20 C -0.652 4.652 21 C -0.100 4.100 22 C -0.406 4.406 23 Si 1.001 2.999 24 C -0.453 4.453 25 C -0.449 4.449 26 C -0.453 4.453 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.166 0.834 31 H 0.096 0.904 32 H 0.389 0.611 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.453 5.995 -0.650 6.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.204 6.204 3 C 0.133 3.867 4 C -0.189 4.189 5 C 0.007 3.993 6 C -0.197 4.197 7 O -0.350 6.350 8 Si 0.732 3.268 9 H -0.160 1.160 10 H -0.144 1.144 11 H -0.163 1.163 12 C -0.205 4.205 13 Br 0.064 6.936 14 C -0.079 4.079 15 C -0.011 4.011 16 O -0.606 6.606 17 S 2.675 3.325 18 O -0.921 6.921 19 O -0.939 6.939 20 C -0.779 4.779 21 C -0.139 4.139 22 C -0.492 4.492 23 Si 1.198 2.802 24 C -0.560 4.560 25 C -0.556 4.556 26 C -0.561 4.561 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.114 0.886 32 H 0.238 0.762 33 H 0.178 0.822 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.202 5.509 -1.204 5.766 hybrid contribution -0.011 0.426 0.529 0.679 sum -1.214 5.935 -0.675 6.096 Atomic orbital electron populations 1.23341 0.76545 1.05328 1.02294 1.86214 1.22937 1.24894 1.86327 1.19112 0.90310 0.86188 0.91135 1.21031 1.01980 0.89305 1.06558 1.19119 0.91117 0.94897 0.94162 1.24887 0.85130 0.97734 1.11906 1.86371 1.18459 1.38184 1.92006 0.86071 0.84604 0.80784 0.75359 1.16001 1.14359 1.16277 1.21026 0.93377 0.92302 1.13765 1.96776 1.78790 1.20433 1.97591 1.21003 1.01318 0.88498 0.97123 1.17025 0.86336 0.82250 1.15482 1.85772 1.71691 1.45558 1.57569 1.06053 0.76511 0.76292 0.73611 1.93655 1.81289 1.34705 1.82416 1.93651 1.42276 1.86235 1.71784 1.30982 1.19783 1.17802 1.09368 1.20964 1.00545 1.00882 0.91499 1.26168 1.01845 1.03154 1.17995 0.79345 0.67291 0.67352 0.66254 1.26170 1.14536 1.04580 1.10755 1.26099 1.12670 1.10579 1.06270 1.26175 1.06655 1.18638 1.04619 0.91463 0.87125 0.91605 0.81674 0.88599 0.76236 0.82163 0.84747 0.84131 0.89912 0.89923 0.89998 0.89952 0.91174 0.91122 0.91104 0.91242 0.91165 0.91266 0.91084 0.91122 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.29 -1.04 9.73 -41.56 -0.40 -1.45 16 3 C 0.18 0.55 5.93 -39.12 -0.23 0.32 16 4 C -0.17 -0.19 8.35 -39.46 -0.33 -0.52 16 5 C 0.01 0.00 4.49 -104.59 -0.47 -0.47 16 6 C -0.09 0.15 2.43 36.01 0.09 0.23 16 7 O -0.54 1.27 11.50 -35.23 -0.41 0.87 16 8 Si 0.92 -1.29 26.65 -169.99 -4.53 -5.82 16 9 H -0.24 0.44 7.11 56.52 0.40 0.84 16 10 H -0.22 0.24 6.27 56.52 0.35 0.60 16 11 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 12 C -0.12 -0.03 5.96 -39.52 -0.24 -0.26 16 13 Br -0.02 0.02 29.81 -68.01 -2.03 -2.01 16 14 C -0.06 -0.01 8.20 -39.43 -0.32 -0.34 16 15 C 0.03 0.09 4.81 -39.12 -0.19 -0.10 16 16 O -0.65 -2.26 9.84 -54.20 -0.53 -2.79 16 17 S 2.58 8.49 5.17 -107.50 -0.56 7.93 16 18 O -0.92 -6.07 18.09 -67.04 -1.21 -7.28 16 19 O -0.94 -4.83 15.81 -68.54 -1.08 -5.92 16 20 C -0.65 0.62 5.46 37.16 0.20 0.82 16 21 C -0.10 0.09 4.59 -26.73 -0.12 -0.03 16 22 C -0.41 0.92 4.45 37.16 0.17 1.09 16 23 Si 1.00 -2.69 12.19 -169.99 -2.07 -4.77 16 24 C -0.45 0.62 8.65 101.05 0.87 1.50 16 25 C -0.45 0.75 8.65 101.05 0.87 1.63 16 26 C -0.45 0.57 8.65 101.05 0.87 1.44 16 27 H 0.07 -0.11 7.66 -51.93 -0.40 -0.51 16 28 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 29 H 0.07 -0.15 7.67 -51.93 -0.40 -0.54 16 30 H 0.17 -0.08 5.40 -52.49 -0.28 -0.36 16 31 H 0.10 -0.28 7.14 -51.93 -0.37 -0.66 16 32 H 0.39 -2.56 8.74 45.56 0.40 -2.16 16 33 H 0.16 -0.44 7.49 -52.49 -0.39 -0.83 16 34 H 0.13 -0.38 6.60 -51.93 -0.34 -0.72 16 35 H 0.14 -0.43 8.14 -51.93 -0.42 -0.85 16 36 H 0.08 -0.12 7.79 -51.93 -0.40 -0.53 16 37 H 0.08 -0.14 7.79 -51.93 -0.40 -0.54 16 38 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 39 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 42 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 47 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 48 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 LS Contribution 419.53 15.07 6.32 6.32 Total: 0.00 -9.91 419.53 -11.15 -21.05 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -6.82 Total: -12.43 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 2.17 Total: 6.30 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -3.64 Total: -16.57 kcal Atomic # 14 Polarization: -3.99 SS G_CDS: -6.60 Total: -10.59 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -0.56 Total: 7.93 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.03 Total: -2.01 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -9.91 -11.15 -21.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2162986_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.225 kcal (2) G-P(sol) polarization free energy of solvation -9.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds