Wall clock time and date at job start Tue Mar 9 2021 13:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36005 * 116.99434 * 2 1 4 4 C 1.38519 * 120.06970 * 0.02562 * 3 2 1 5 5 C 1.38274 * 120.00928 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.92838 * 179.97438 * 5 4 3 7 7 O 1.42892 * 109.47118 * 16.35880 * 6 5 4 8 8 Si 1.86302 * 109.47073 * 256.35814 * 6 5 4 9 9 H 1.48499 * 109.47288 * 185.42159 * 8 6 5 10 10 H 1.48500 * 109.47194 * 305.42233 * 8 6 5 11 11 H 1.48501 * 109.47068 * 65.42261 * 8 6 5 12 12 C 1.38285 * 120.14190 * 359.97438 * 5 4 3 13 13 Br 1.89095 * 119.94178 * 180.02562 * 12 5 4 14 14 C 1.38363 * 120.12541 * 359.97438 * 12 5 4 15 15 C 1.38523 * 119.98978 * 0.02562 * 14 12 5 16 16 O 1.35988 * 120.06879 * 180.02562 * 15 14 12 17 17 S 1.52202 * 113.99804 * 269.97502 * 16 15 14 18 18 O 1.42107 * 104.27379 * 191.07401 * 17 16 15 19 19 O 1.42095 * 104.27861 * 318.92528 * 17 16 15 20 20 C 1.81397 * 104.44921 * 75.00162 * 17 16 15 21 21 C 1.52997 * 109.46794 * 179.97438 * 20 17 16 22 22 C 1.53008 * 109.46935 * 180.02562 * 21 20 17 23 23 Si 1.86298 * 109.46982 * 180.02562 * 22 21 20 24 24 C 1.86300 * 109.47222 * 60.00378 * 23 22 21 25 25 C 1.86309 * 109.47016 * 179.97438 * 23 22 21 26 26 C 1.86290 * 109.47321 * 299.99708 * 23 22 21 27 27 H 1.08992 * 109.47358 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.46776 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47163 * 299.99232 * 1 2 3 30 30 H 1.07998 * 119.99010 * 359.69661 * 4 3 2 31 31 H 1.09001 * 109.47152 * 136.36511 * 6 5 4 32 32 H 0.96709 * 113.99659 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.00730 * 180.02562 * 14 12 5 34 34 H 1.08992 * 109.47079 * 299.99723 * 20 17 16 35 35 H 1.08997 * 109.47156 * 59.99987 * 20 17 16 36 36 H 1.09002 * 109.47294 * 299.99731 * 21 20 17 37 37 H 1.08997 * 109.47095 * 60.00175 * 21 20 17 38 38 H 1.09002 * 109.46873 * 299.99944 * 22 21 20 39 39 H 1.08997 * 109.47123 * 60.00147 * 22 21 20 40 40 H 1.08992 * 109.47496 * 59.99580 * 24 23 22 41 41 H 1.08997 * 109.47024 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.46943 * 299.99690 * 24 23 22 43 43 H 1.09004 * 109.46736 * 59.99879 * 25 23 22 44 44 H 1.08993 * 109.47217 * 180.02562 * 25 23 22 45 45 H 1.09002 * 109.46842 * 300.00547 * 25 23 22 46 46 H 1.09004 * 109.47338 * 60.00299 * 26 23 22 47 47 H 1.09006 * 109.47303 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47365 * 300.00228 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2933 2.3744 0.0005 5 6 1.9222 3.6059 0.0011 6 6 1.1010 4.8695 0.0011 7 8 -0.2426 4.5645 0.3799 8 14 1.1107 5.6164 -1.7057 9 1 0.4129 6.9269 -1.6765 10 1 2.5133 5.8122 -2.1524 11 1 0.4134 4.7053 -2.6486 12 6 3.3030 3.6803 0.0016 13 35 4.1572 5.3674 0.0031 14 6 4.0609 2.5227 0.0021 15 6 3.4364 1.2863 0.0016 16 8 4.1797 0.1475 0.0027 17 16 4.5192 -0.3714 -1.3873 18 8 5.0502 -1.6692 -1.1568 19 8 3.3216 -0.1915 -2.1307 20 6 5.8141 0.7494 -1.9851 21 6 6.2455 0.3265 -3.3908 22 6 7.3382 1.2715 -3.8948 23 14 7.8630 0.7571 -5.6067 24 6 6.3977 0.8339 -6.7547 25 6 9.1930 1.9083 -6.2207 26 6 8.5225 -0.9844 -5.5571 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2147 2.3189 -0.0040 31 1 1.5264 5.5793 0.7106 32 1 -0.8294 5.3329 0.4010 33 1 5.1392 2.5831 0.0030 34 1 5.4278 1.7681 -2.0143 35 1 6.6715 0.7050 -1.3136 36 1 6.6320 -0.6922 -3.3612 37 1 5.3883 0.3706 -4.0625 38 1 6.9522 2.2905 -3.9243 39 1 8.1954 1.2270 -3.2229 40 1 6.0118 1.8528 -6.7838 41 1 6.7046 0.5325 -7.7562 42 1 5.6192 0.1607 -6.3957 43 1 10.0504 1.8638 -5.5491 44 1 9.4997 1.6076 -7.2225 45 1 8.8067 2.9271 -6.2498 46 1 7.7441 -1.6577 -5.1980 47 1 8.8291 -1.2855 -6.5588 48 1 9.3798 -1.0293 -4.8855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2162986_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:13 Heat of formation + Delta-G solvation = -188.088029 kcal Electronic energy + Delta-G solvation = -31935.243086 eV Core-core repulsion = 27481.627543 eV Total energy + Delta-G solvation = -4453.615543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.63987 -40.43777 -39.30817 -38.42341 -37.45926 -37.28622 -35.86235 -33.25262 -32.58463 -30.41142 -29.60202 -28.69252 -28.36615 -28.30737 -28.20767 -26.93763 -23.94926 -23.54963 -22.69535 -21.61722 -19.76127 -19.32017 -18.99782 -18.58611 -18.09388 -17.32184 -16.97281 -16.81057 -16.46493 -16.35795 -15.90959 -15.61984 -15.45917 -14.84461 -14.74929 -14.57168 -14.29284 -14.14024 -14.05280 -13.97886 -13.96344 -13.80382 -13.57796 -13.51579 -13.38188 -13.33000 -13.15062 -13.05644 -13.04896 -12.97687 -12.94980 -12.87699 -12.71625 -12.51657 -12.23123 -12.01812 -11.83492 -11.81538 -11.46014 -11.21832 -10.83879 -10.70479 -10.68225 -10.41617 -9.99417 -9.44160 -1.18820 -0.37361 -0.29445 0.25350 0.93430 1.04152 1.42297 1.49048 1.89469 1.91016 1.93826 2.01033 2.02427 2.06729 2.50231 2.73998 2.82707 2.94328 3.25762 3.34402 3.53455 3.64832 3.74427 3.87160 4.09421 4.15049 4.17507 4.19593 4.28007 4.28617 4.40953 4.48354 4.62515 4.63167 4.72309 4.79503 4.81585 4.83964 4.85849 4.86820 4.87965 4.88213 4.88881 5.09922 5.11869 5.46507 5.60345 5.66769 5.67246 5.95702 6.72613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.322 6.322 3 C 0.161 3.839 4 C -0.174 4.174 5 C 0.005 3.995 6 C -0.084 4.084 7 O -0.554 6.554 8 Si 0.932 3.068 9 H -0.227 1.227 10 H -0.224 1.224 11 H -0.270 1.270 12 C -0.129 4.129 13 Br -0.007 7.007 14 C -0.052 4.052 15 C 0.008 3.992 16 O -0.656 6.656 17 S 2.568 3.432 18 O -0.970 6.970 19 O -0.971 6.971 20 C -0.628 4.628 21 C -0.120 4.120 22 C -0.410 4.410 23 Si 1.066 2.934 24 C -0.473 4.473 25 C -0.461 4.461 26 C -0.475 4.475 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.113 0.887 32 H 0.407 0.593 33 H 0.190 0.810 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 8.485 -0.259 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.234 6.234 3 C 0.111 3.889 4 C -0.194 4.194 5 C 0.002 3.998 6 C -0.192 4.192 7 O -0.364 6.364 8 Si 0.749 3.251 9 H -0.149 1.149 10 H -0.146 1.146 11 H -0.194 1.194 12 C -0.209 4.209 13 Br 0.078 6.922 14 C -0.073 4.073 15 C -0.036 4.036 16 O -0.615 6.615 17 S 2.669 3.331 18 O -0.968 6.968 19 O -0.970 6.970 20 C -0.759 4.759 21 C -0.158 4.158 22 C -0.496 4.496 23 Si 1.259 2.741 24 C -0.579 4.579 25 C -0.568 4.568 26 C -0.580 4.580 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.192 0.808 31 H 0.131 0.869 32 H 0.259 0.741 33 H 0.207 0.793 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.482 7.981 -0.802 8.036 hybrid contribution -0.271 -0.278 0.355 0.526 sum -0.753 7.703 -0.447 7.753 Atomic orbital electron populations 1.23588 0.75057 1.06405 1.03347 1.86169 1.24755 1.25829 1.86676 1.19455 0.90931 0.86527 0.92014 1.21161 1.02437 0.89132 1.06641 1.19447 0.91714 0.95418 0.93240 1.24861 0.85477 0.96822 1.12064 1.86340 1.18432 1.39754 1.91880 0.85867 0.84094 0.80447 0.74649 1.14864 1.14578 1.19409 1.21173 0.93466 0.92889 1.13335 1.96787 1.78455 1.19382 1.97552 1.21314 1.02766 0.87458 0.95805 1.17403 0.86506 0.82688 1.16996 1.85723 1.71993 1.46307 1.57452 1.06203 0.77062 0.76460 0.73327 1.93586 1.81881 1.38213 1.83170 1.93601 1.44509 1.86633 1.72220 1.30822 1.18304 1.17032 1.09740 1.21217 1.01464 1.01676 0.91483 1.26230 1.01710 1.03477 1.18145 0.78339 0.65342 0.65201 0.65263 1.26421 1.15600 1.04601 1.11257 1.26247 1.13254 1.11109 1.06166 1.26444 1.06796 1.20402 1.04388 0.90802 0.86140 0.90130 0.80797 0.86920 0.74093 0.79295 0.82251 0.81286 0.89756 0.89582 0.88616 0.88644 0.90919 0.91536 0.91554 0.91035 0.91644 0.90975 0.91574 0.91539 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.32 -3.03 9.73 -72.76 -0.71 -3.74 16 3 C 0.16 1.21 5.93 22.57 0.13 1.34 16 4 C -0.17 -0.51 8.35 22.35 0.19 -0.32 16 5 C 0.00 0.00 4.49 -19.84 -0.09 -0.09 16 6 C -0.08 0.36 2.43 71.24 0.17 0.53 16 7 O -0.55 3.07 11.50 -148.98 -1.71 1.36 16 8 Si 0.93 -3.29 26.65 68.60 1.83 -1.46 16 9 H -0.23 1.19 7.11 99.48 0.71 1.89 16 10 H -0.22 0.74 6.27 99.48 0.62 1.36 16 11 H -0.27 -0.36 7.11 99.48 0.71 0.35 16 12 C -0.13 0.07 5.96 22.31 0.13 0.20 16 13 Br -0.01 0.02 29.81 -20.37 -0.61 -0.58 16 14 C -0.05 0.01 8.20 22.37 0.18 0.19 16 15 C 0.01 0.05 4.81 22.57 0.11 0.16 16 16 O -0.66 -5.55 9.84 -60.43 -0.59 -6.14 16 17 S 2.57 20.69 5.17 -56.49 -0.29 20.40 16 18 O -0.97 -15.18 18.09 -118.57 -2.15 -17.32 16 19 O -0.97 -12.20 15.81 -117.13 -1.85 -14.05 16 20 C -0.63 1.91 5.46 71.98 0.39 2.30 16 21 C -0.12 0.32 4.59 30.60 0.14 0.46 16 22 C -0.41 2.69 4.45 71.98 0.32 3.01 16 23 Si 1.07 -6.51 12.19 68.60 0.84 -5.67 16 24 C -0.47 1.24 8.65 113.37 0.98 2.22 16 25 C -0.46 1.97 8.65 113.37 0.98 2.95 16 26 C -0.47 1.07 8.65 113.37 0.98 2.05 16 27 H 0.07 -0.13 7.66 -2.39 -0.02 -0.14 16 28 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.08 -0.27 7.67 -2.39 -0.02 -0.29 16 30 H 0.17 -0.03 5.40 -2.91 -0.02 -0.04 16 31 H 0.11 -0.87 7.14 -2.39 -0.02 -0.88 16 32 H 0.41 -5.86 8.74 -74.05 -0.65 -6.51 16 33 H 0.19 -1.41 7.49 -2.91 -0.02 -1.43 16 34 H 0.16 -1.26 6.60 -2.39 -0.02 -1.27 16 35 H 0.17 -1.44 8.14 -2.39 -0.02 -1.46 16 36 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 37 H 0.09 -0.30 7.79 -2.39 -0.02 -0.32 16 38 H 0.10 -0.84 7.96 -2.39 -0.02 -0.86 16 39 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 40 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 41 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 42 H 0.07 -0.12 7.79 -2.39 -0.02 -0.13 16 43 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 44 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 45 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 46 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 47 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 48 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 Total: 0.00 -25.51 419.53 1.49 -24.02 By element: Atomic # 1 Polarization: -13.94 SS G_CDS: 1.00 Total: -12.94 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.74 Total: 16.13 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -7.01 Total: -39.90 kcal Atomic # 14 Polarization: -9.79 SS G_CDS: 2.66 Total: -7.13 kcal Atomic # 16 Polarization: 20.69 SS G_CDS: -0.29 Total: 20.40 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.61 Total: -0.58 kcal Total: -25.51 1.49 -24.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2162986_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.070 kcal (2) G-P(sol) polarization free energy of solvation -25.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds