Wall clock time and date at job start Tue Mar 9 2021 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47455 * 2 1 4 4 C 1.34223 * 117.00370 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99676 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00330 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.84914 * 311.19807 * 6 4 3 8 8 C 1.53781 * 113.69134 * 82.46277 * 6 4 3 9 9 C 1.54049 * 87.08031 * 139.98880 * 8 6 4 10 10 F 1.39902 * 113.61191 * 89.07246 * 9 8 6 11 11 C 1.52990 * 113.70090 * 220.05426 * 9 8 6 12 12 S 1.81398 * 109.47021 * 282.42365 * 11 9 8 13 13 O 1.42096 * 110.54584 * 291.61960 * 12 11 9 14 14 O 1.42106 * 110.54518 * 68.37506 * 12 11 9 15 15 O 1.52203 * 104.45189 * 179.97438 * 12 11 9 16 16 C 1.36000 * 113.99662 * 74.99963 * 15 12 11 17 17 C 1.39148 * 120.06873 * 90.00158 * 16 15 12 18 18 O 1.36011 * 120.06191 * 359.97438 * 17 16 15 19 19 C 1.42900 * 116.99803 * 179.97438 * 18 17 16 20 20 C 1.38561 * 119.87351 * 179.97438 * 17 16 15 21 21 C 1.38237 * 120.01134 * 359.97438 * 20 17 16 22 22 C 1.50693 * 119.93399 * 180.02562 * 21 20 17 23 23 O 1.42897 * 109.46953 * 14.99951 * 22 21 20 24 24 Si 1.86297 * 109.47358 * 135.00037 * 22 21 20 25 25 C 1.38332 * 120.13247 * 359.97438 * 21 20 17 26 26 Br 1.89102 * 119.93671 * 180.02562 * 25 21 20 27 27 C 1.38322 * 120.12733 * 359.79110 * 25 21 20 28 28 C 1.53781 * 113.61615 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.46811 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46863 * 299.99950 * 1 2 3 32 32 H 1.09009 * 109.46590 * 240.00083 * 2 1 3 33 33 H 1.08993 * 109.47228 * 120.00280 * 2 1 3 34 34 H 1.09005 * 113.61471 * 254.54463 * 8 6 4 35 35 H 1.08996 * 113.61178 * 25.35805 * 8 6 4 36 36 H 1.09003 * 109.47414 * 42.42054 * 11 9 8 37 37 H 1.08995 * 109.48071 * 162.42157 * 11 9 8 38 38 H 1.09004 * 109.47361 * 299.99912 * 19 18 17 39 39 H 1.08998 * 109.47013 * 60.00229 * 19 18 17 40 40 H 1.08999 * 109.47098 * 180.02562 * 19 18 17 41 41 H 1.08000 * 119.99182 * 180.02562 * 20 17 16 42 42 H 1.09003 * 109.47067 * 255.00364 * 22 21 20 43 43 H 0.96693 * 114.00202 * 60.00231 * 23 22 21 44 44 H 1.48499 * 110.00224 * 179.97438 * 24 22 21 45 45 H 1.48500 * 109.99722 * 301.32030 * 24 22 21 46 46 H 1.08004 * 120.00212 * 180.22664 * 27 25 21 47 47 H 1.09002 * 113.61445 * 334.48493 * 28 6 4 48 48 H 1.09002 * 113.61408 * 105.30224 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.4710 3.5811 -0.7570 8 6 3.9868 3.5793 1.3947 9 6 5.3594 4.1449 0.9831 10 9 5.2859 5.3942 0.3577 11 6 6.4036 4.0987 2.1003 12 16 6.0942 5.4473 3.2733 13 8 6.3625 6.7052 2.6692 14 8 4.8866 5.2202 3.9872 15 8 7.1849 5.2947 4.3239 16 6 8.4136 5.7043 3.9090 17 6 8.8098 7.0244 4.1002 18 8 7.9687 7.9079 4.7020 19 6 8.4424 9.2461 4.8656 20 6 10.0627 7.4372 3.6765 21 6 10.9169 6.5383 3.0655 22 6 12.2794 6.9890 2.6058 23 8 12.5927 8.2471 3.2066 24 14 13.5535 5.7263 3.1085 25 6 10.5238 5.2256 2.8761 26 35 11.6969 4.0004 2.0403 27 6 9.2761 4.8063 3.3014 28 6 5.4583 2.9679 -0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2298 4.3462 1.5588 35 1 4.0377 2.8541 2.2068 36 1 6.3376 3.1429 2.6201 37 1 7.3995 4.2113 1.6719 38 1 9.3458 9.2398 5.4756 39 1 8.6666 9.6742 3.8886 40 1 7.6763 9.8450 5.3580 41 1 10.3724 8.4613 3.8243 42 1 12.2804 7.0942 1.5208 43 1 12.6096 8.2281 4.1731 44 1 14.9016 6.1588 2.6604 45 1 13.5400 5.5504 4.5830 46 1 8.9727 3.7800 3.1558 47 1 5.9128 2.0757 0.4296 48 1 5.8897 3.2397 -0.9645 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2162986_16464788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:10 Heat of formation + Delta-G solvation = -239.161430 kcal Electronic energy + Delta-G solvation = -40430.363554 eV Core-core repulsion = 34735.931764 eV Total energy + Delta-G solvation = -5694.431789 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 483.027 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -49.18708 -42.76905 -41.81334 -40.57624 -39.55497 -39.39418 -38.30714 -37.65226 -37.46572 -37.16869 -33.79639 -32.93784 -32.64522 -32.01940 -30.73144 -28.88590 -27.43630 -27.12011 -26.97340 -24.21434 -23.84881 -23.72116 -22.36314 -21.73761 -20.93807 -19.91373 -19.36562 -19.23067 -19.00137 -18.69570 -18.26250 -17.82738 -17.65268 -17.56397 -17.24741 -16.99342 -16.62324 -16.41905 -16.31253 -16.22861 -16.11164 -15.77815 -15.65955 -15.43282 -14.92568 -14.73671 -14.68179 -14.46420 -14.34395 -14.20152 -14.02066 -13.81536 -13.80264 -13.71211 -13.25516 -13.22918 -13.14908 -13.08842 -13.01494 -13.00398 -12.97167 -12.80144 -12.62896 -12.59830 -12.51606 -12.49818 -12.17837 -11.95842 -11.73442 -11.57140 -11.54159 -11.40541 -11.05500 -10.26678 -9.66705 -4.66994 -1.30597 -0.49140 -0.48247 -0.14299 0.85300 1.04315 1.06989 1.52538 1.54305 1.75234 1.80899 2.00604 2.32566 2.51747 2.63992 2.67159 2.87612 2.93012 2.98666 3.06158 3.09914 3.19008 3.36417 3.49606 3.58979 3.73214 3.86379 3.89645 3.93035 3.95219 3.95988 4.01736 4.04717 4.11693 4.16144 4.21833 4.25563 4.27281 4.32237 4.42053 4.50635 4.55726 4.57119 4.62889 4.68233 4.77859 4.89241 4.90852 4.99623 5.39270 5.81449 6.15683 6.64924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.503 6.503 6 C -0.109 4.109 7 H 0.138 0.862 8 C -0.147 4.147 9 C 0.104 3.896 10 F -0.169 7.169 11 C -0.678 4.678 12 S 2.588 3.412 13 O -0.924 6.924 14 O -0.911 6.911 15 O -0.644 6.644 16 C 0.027 3.973 17 C 0.194 3.806 18 O -0.291 6.291 19 C 0.018 3.982 20 C -0.185 4.185 21 C -0.015 4.015 22 C -0.070 4.070 23 O -0.530 6.530 24 Si 0.546 3.454 25 C -0.131 4.131 26 Br 0.085 6.915 27 C -0.051 4.051 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.377 0.623 44 H -0.225 1.225 45 H -0.242 1.242 46 H 0.164 0.836 47 H 0.122 0.878 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.362 -1.204 2.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.128 4.128 7 H 0.156 0.844 8 C -0.185 4.185 9 C 0.084 3.916 10 F -0.149 7.149 11 C -0.803 4.803 12 S 2.681 3.319 13 O -0.922 6.922 14 O -0.909 6.909 15 O -0.602 6.602 16 C -0.016 4.016 17 C 0.143 3.857 18 O -0.202 6.202 19 C -0.076 4.076 20 C -0.204 4.204 21 C -0.018 4.018 22 C -0.179 4.179 23 O -0.335 6.335 24 Si 0.442 3.558 25 C -0.211 4.211 26 Br 0.170 6.830 27 C -0.073 4.073 28 C -0.159 4.159 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.181 0.819 42 H 0.155 0.845 43 H 0.225 0.775 44 H -0.148 1.148 45 H -0.165 1.165 46 H 0.181 0.819 47 H 0.140 0.860 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.677 -2.612 -1.089 3.289 hybrid contribution -0.248 0.711 0.569 0.944 sum 1.429 -1.901 -0.520 2.434 Atomic orbital electron populations 1.21830 0.92205 1.03334 1.03785 1.23127 0.95740 0.79599 1.02832 1.86519 1.24021 1.32980 1.83470 1.23204 0.80901 0.91803 0.72289 1.90689 1.60545 1.42707 1.45073 1.22466 0.97223 0.92099 1.01012 0.84399 1.23863 0.96039 1.01945 0.96623 1.21177 0.95276 0.82273 0.92884 1.93016 1.96983 1.41585 1.83329 1.31405 1.09526 1.24265 1.15068 1.05922 0.74891 0.76220 0.74897 1.93684 1.82929 1.37548 1.78046 1.93673 1.41924 1.86335 1.68958 1.85807 1.28005 1.85517 1.60891 1.16993 0.84411 0.90920 1.09324 1.19108 0.89150 0.88288 0.89153 1.86228 1.40795 1.21137 1.72009 1.23378 1.02133 0.79412 1.02684 1.21040 0.92382 1.02181 1.04799 1.20277 0.96936 0.91265 0.93286 1.25189 0.96072 0.93925 1.02716 1.86576 1.92070 1.29946 1.24912 0.93609 0.81602 0.93751 0.86877 1.20958 0.96288 0.94046 1.09771 1.96355 1.53470 1.55446 1.77715 1.21014 0.91453 0.99871 0.94937 1.23576 0.93748 0.97680 1.00855 0.91305 0.89930 0.91257 0.90982 0.90973 0.87171 0.86441 0.81988 0.83080 0.91706 0.91231 0.86877 0.81872 0.84466 0.77521 1.14794 1.16499 0.81866 0.85990 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 10.29 37.16 0.38 0.67 16 2 C 0.06 -0.01 6.19 37.16 0.23 0.22 16 3 O -0.35 -0.42 10.22 -39.24 -0.40 -0.82 16 4 C 0.48 0.55 7.49 36.00 0.27 0.82 16 5 O -0.50 -1.71 15.65 -18.75 -0.29 -2.00 16 6 C -0.11 0.12 4.24 -90.96 -0.39 -0.26 16 7 H 0.14 -0.35 8.14 -51.93 -0.42 -0.77 16 8 C -0.15 0.16 6.94 -25.78 -0.18 -0.02 16 9 C 0.10 -0.09 1.58 -89.69 -0.14 -0.23 16 10 F -0.17 -0.24 16.51 2.25 0.04 -0.20 16 11 C -0.68 1.50 5.14 37.15 0.19 1.69 16 12 S 2.59 5.73 4.92 -107.50 -0.53 5.20 16 13 O -0.92 -4.26 15.37 -68.54 -1.05 -5.31 16 14 O -0.91 -4.43 17.98 -67.04 -1.21 -5.64 16 15 O -0.64 -1.23 9.84 -54.24 -0.53 -1.76 16 16 C 0.03 0.03 4.80 -39.13 -0.19 -0.16 16 17 C 0.19 0.30 5.93 -39.12 -0.23 0.07 16 18 O -0.29 -0.66 9.73 -41.59 -0.40 -1.07 16 19 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 20 C -0.18 0.09 8.22 -39.46 -0.32 -0.24 16 21 C -0.01 0.01 5.13 -104.59 -0.54 -0.52 16 22 C -0.07 0.07 2.84 36.00 0.10 0.17 16 23 O -0.53 0.20 11.64 -35.23 -0.41 -0.21 16 24 Si 0.55 -0.05 26.81 -169.99 -4.56 -4.60 16 25 C -0.13 0.21 5.81 -39.52 -0.23 -0.02 16 26 Br 0.09 -0.26 27.32 -68.01 -1.86 -2.12 16 27 C -0.05 0.09 8.20 -39.43 -0.32 -0.24 16 28 C -0.12 0.24 6.85 -25.94 -0.18 0.06 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.02 8.13 -51.92 -0.42 -0.44 16 33 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 34 H 0.11 -0.14 8.14 -51.93 -0.42 -0.57 16 35 H 0.12 -0.25 8.00 -51.93 -0.42 -0.67 16 36 H 0.16 -0.88 8.06 -51.92 -0.42 -1.30 16 37 H 0.15 -0.70 6.63 -51.93 -0.34 -1.04 16 38 H 0.06 -0.25 7.66 -51.93 -0.40 -0.64 16 39 H 0.07 -0.18 7.66 -51.93 -0.40 -0.57 16 40 H 0.11 -0.35 8.14 -51.93 -0.42 -0.78 16 41 H 0.16 -0.38 5.32 -52.49 -0.28 -0.66 16 42 H 0.14 -0.26 7.96 -51.93 -0.41 -0.67 16 43 H 0.38 -1.24 8.43 45.56 0.38 -0.86 16 44 H -0.23 -0.63 7.11 56.52 0.40 -0.23 16 45 H -0.24 -0.52 7.11 56.52 0.40 -0.12 16 46 H 0.16 -0.86 7.53 -52.48 -0.40 -1.26 16 47 H 0.12 -0.30 7.39 -51.93 -0.38 -0.69 16 48 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 LS Contribution 427.57 15.07 6.44 6.44 Total: 0.00 -11.95 427.57 -11.38 -23.33 By element: Atomic # 1 Polarization: -8.14 SS G_CDS: -6.06 Total: -14.20 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.55 Total: 2.97 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -4.30 Total: -16.81 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.20 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: -4.56 Total: -4.60 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -0.53 Total: 5.20 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -1.86 Total: -2.12 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -11.95 -11.38 -23.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2162986_16464788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.827 kcal (2) G-P(sol) polarization free energy of solvation -11.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds