Wall clock time and date at job start Tue Mar 9 2021 13:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00227 * 2 1 4 4 C 1.50706 * 109.46785 * 125.66230 * 3 2 1 5 5 C 1.38238 * 120.00089 * 266.55487 * 4 3 2 6 6 C 1.38248 * 120.14547 * 180.26035 * 5 4 3 7 7 C 1.50700 * 119.92827 * 179.76066 * 6 5 4 8 8 O 1.42897 * 109.47379 * 299.72204 * 7 6 5 9 9 Si 1.86303 * 109.47080 * 179.72166 * 7 6 5 10 10 C 1.38242 * 120.14796 * 359.48845 * 6 5 4 11 11 C 1.38566 * 119.99697 * 0.25347 * 10 6 5 12 12 O 1.35995 * 120.07450 * 180.02562 * 11 10 6 13 13 C 1.42899 * 116.99886 * 359.97438 * 12 11 10 14 14 C 1.38562 * 119.99813 * 86.30042 * 4 3 2 15 15 O 1.35998 * 120.07350 * 0.02562 * 14 4 3 16 16 S 1.52207 * 113.99810 * 88.98674 * 15 14 4 17 17 O 1.42106 * 104.27246 * 191.83207 * 16 15 14 18 18 O 1.42096 * 104.27828 * 319.68539 * 16 15 14 19 19 C 1.81400 * 104.44859 * 75.76223 * 16 15 14 20 20 H 1.08999 * 112.85036 * 305.50803 * 19 16 15 21 21 C 1.53782 * 113.61499 * 76.82271 * 19 16 15 22 22 C 1.53782 * 87.08109 * 139.97829 * 21 19 16 23 23 H 1.09003 * 113.61282 * 89.11774 * 22 21 19 24 24 C 1.50696 * 113.61171 * 220.01499 * 22 21 19 25 25 O 1.20827 * 120.00018 * 97.50234 * 24 22 21 26 26 O 1.34226 * 120.00378 * 277.49841 * 24 22 21 27 27 C 1.45195 * 117.00546 * 180.02562 * 26 24 22 28 28 C 1.53776 * 87.07904 * 334.56536 * 22 21 19 29 29 H 1.07990 * 119.99975 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99496 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00048 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46844 * 5.66563 * 3 2 1 33 33 H 1.08994 * 109.47336 * 245.66077 * 3 2 1 34 34 H 1.07997 * 119.92947 * 359.97438 * 5 4 3 35 35 H 1.09002 * 109.46784 * 59.72778 * 7 6 5 36 36 H 0.96702 * 114.00362 * 179.97438 * 8 7 6 37 37 H 1.48496 * 110.00044 * 298.68177 * 9 7 6 38 38 H 1.48499 * 110.00009 * 60.00603 * 9 7 6 39 39 H 1.07994 * 120.00533 * 180.23477 * 10 6 5 40 40 H 1.08999 * 109.47315 * 60.00139 * 13 12 11 41 41 H 1.09006 * 109.47268 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47324 * 300.00384 * 13 12 11 43 43 H 1.09004 * 113.60904 * 254.52905 * 21 19 16 44 44 H 1.08995 * 113.61537 * 25.42503 * 21 19 16 45 45 H 1.09001 * 109.46998 * 300.00091 * 27 26 24 46 46 H 1.08998 * 109.47223 * 59.99663 * 27 26 24 47 47 H 1.08997 * 109.47802 * 179.97438 * 27 26 24 48 48 H 1.08998 * 113.61834 * 270.88197 * 28 22 21 49 49 H 1.09004 * 113.69059 * 139.99824 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0321 1.3259 1.1544 5 6 2.6574 1.8866 2.3611 6 6 3.5453 1.9120 3.4204 7 6 3.1335 2.5294 4.7321 8 8 2.8053 3.9052 4.5288 9 14 4.5389 2.3993 5.9481 10 6 4.8083 1.3674 3.2810 11 6 5.1884 0.7991 2.0758 12 8 6.4302 0.2624 1.9370 13 6 7.2925 0.3194 3.0752 14 6 4.2964 0.7781 1.0079 15 8 4.6651 0.2220 -0.1771 16 16 5.2947 1.2055 -1.1533 17 8 5.3362 0.4984 -2.3852 18 8 4.5165 2.3860 -1.0122 19 6 6.9715 1.4679 -0.5132 20 1 6.9817 1.7854 0.5295 21 6 7.9348 0.3078 -0.8153 22 6 9.0066 1.3745 -1.0952 23 1 9.5743 1.6655 -0.2114 24 6 9.8849 1.0522 -2.2766 25 8 9.6464 1.5377 -3.3570 26 8 10.9322 0.2259 -2.1287 27 6 11.7348 -0.0391 -3.3093 28 6 7.8521 2.3338 -1.4294 29 1 -0.5399 -0.9352 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3596 2.1310 0.1015 33 1 2.6120 1.4080 -0.9363 34 1 1.6703 2.3098 2.4752 35 1 2.2637 2.0024 5.1244 36 1 2.5303 4.3669 5.3327 37 1 4.8687 0.9722 6.1924 38 1 5.7310 3.1138 5.4249 39 1 5.4987 1.3852 4.1112 40 1 6.8332 -0.2160 3.9061 41 1 8.2492 -0.1418 2.8297 42 1 7.4529 1.3598 3.3577 43 1 8.1543 -0.3146 0.0522 44 1 7.6566 -0.2729 -1.6947 45 1 11.1102 -0.4928 -4.0788 46 1 12.1504 0.8964 -3.6836 47 1 12.5464 -0.7195 -3.0518 48 1 7.5513 2.3070 -2.4767 49 1 8.0037 3.3476 -1.0585 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_2307266_13206342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:43 Heat of formation + Delta-G solvation = -161.947945 kcal Electronic energy + Delta-G solvation = -38085.166504 eV Core-core repulsion = 33075.128780 eV Total energy + Delta-G solvation = -5010.037723 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.126 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.73066 -41.86165 -40.45492 -39.60510 -39.33700 -38.20443 -37.63455 -37.30199 -37.13182 -35.97150 -32.66735 -31.74332 -29.88983 -28.98326 -27.81292 -27.64355 -27.21033 -26.95487 -23.73792 -23.17981 -22.95447 -21.62527 -20.90929 -20.57660 -19.81382 -19.41141 -18.89194 -18.71577 -18.48267 -18.38476 -17.95308 -17.45092 -17.29212 -16.84391 -16.73062 -16.47874 -16.19909 -15.98303 -15.78983 -15.58871 -15.10874 -14.83503 -14.71806 -14.45777 -14.31796 -14.16726 -13.99295 -13.91269 -13.84510 -13.76395 -13.47322 -13.39877 -13.25846 -13.14314 -13.11614 -13.01903 -12.96715 -12.72742 -12.61465 -12.38521 -12.34659 -12.09636 -11.97063 -11.95635 -11.79559 -11.60129 -11.21266 -10.59112 -10.29792 -10.04372 -9.58954 -5.19586 -1.04929 -0.21985 -0.04865 0.97404 1.02661 1.13837 1.34033 1.40656 1.65821 1.68255 1.71338 2.10961 2.51129 2.69139 2.87617 2.96254 3.09031 3.15780 3.25263 3.51912 3.52381 3.58795 3.73617 3.84197 3.85878 3.86102 3.88549 3.99462 4.05447 4.11662 4.16450 4.17343 4.22627 4.24871 4.29235 4.30568 4.37732 4.46147 4.50296 4.56243 4.59351 4.61649 4.72069 4.87767 4.88464 5.00827 5.04800 5.15373 5.25854 5.35333 5.70372 5.80199 5.83128 6.42772 6.69563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 C -0.064 4.064 4 C -0.001 4.001 5 C -0.104 4.104 6 C -0.012 4.012 7 C -0.077 4.077 8 O -0.541 6.541 9 Si 0.684 3.316 10 C -0.206 4.206 11 C 0.135 3.865 12 O -0.305 6.305 13 C 0.015 3.985 14 C 0.039 3.961 15 O -0.643 6.643 16 S 2.590 3.410 17 O -0.919 6.919 18 O -0.945 6.945 19 C -0.640 4.640 20 H 0.161 0.839 21 C -0.084 4.084 22 C -0.095 4.095 23 H 0.135 0.865 24 C 0.467 3.533 25 O -0.498 6.498 26 O -0.356 6.356 27 C 0.033 3.967 28 C -0.090 4.090 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.386 0.614 37 H -0.252 1.252 38 H -0.248 1.248 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 0.311 10.287 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C -0.101 4.101 4 C -0.003 4.003 5 C -0.123 4.123 6 C -0.013 4.013 7 C -0.187 4.187 8 O -0.347 6.347 9 Si 0.584 3.416 10 C -0.224 4.224 11 C 0.087 3.913 12 O -0.218 6.218 13 C -0.079 4.079 14 C -0.004 4.004 15 O -0.602 6.602 16 S 2.685 3.315 17 O -0.917 6.917 18 O -0.943 6.943 19 C -0.747 4.747 20 H 0.179 0.821 21 C -0.122 4.122 22 C -0.115 4.115 23 H 0.153 0.847 24 C 0.309 3.691 25 O -0.385 6.385 26 O -0.273 6.273 27 C -0.061 4.061 28 C -0.128 4.128 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.103 0.897 36 H 0.235 0.765 37 H -0.177 1.177 38 H -0.172 1.172 39 H 0.156 0.844 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.677 -0.257 8.796 8.958 hybrid contribution 0.635 -0.170 -0.102 0.665 sum 2.311 -0.427 8.694 9.006 Atomic orbital electron populations 1.23933 0.95540 1.02405 0.99850 1.22830 0.96050 0.97595 1.00976 1.19950 0.96922 0.97303 0.95882 1.19810 0.91426 0.92701 0.96393 1.20784 1.01031 1.00051 0.90397 1.19306 0.92352 0.94666 0.94958 1.24713 1.09006 0.85700 0.99303 1.86502 1.90049 1.20187 1.38002 0.94988 0.78094 0.82555 0.85919 1.20818 0.98087 1.06758 0.96743 1.18796 0.85367 0.94334 0.92801 1.86185 1.21335 1.75115 1.39201 1.23320 0.93943 1.02652 0.87987 1.17037 0.94447 1.07044 0.81850 1.85726 1.80538 1.59103 1.34828 1.05820 0.76717 0.73973 0.74973 1.93668 1.86508 1.71760 1.39792 1.93653 1.64426 1.50746 1.85478 1.32176 1.22226 1.07771 1.12533 0.82091 1.22562 0.91379 0.93916 1.04390 1.22416 0.93520 0.99133 0.96407 0.84686 1.23485 0.79513 0.75814 0.90258 1.90708 1.69979 1.49700 1.28126 1.86498 1.39372 1.61050 1.40341 1.23351 0.94369 1.02158 0.86198 1.22654 0.91948 0.98558 0.99641 0.87885 0.88138 0.86742 0.88515 0.89260 0.83457 0.89732 0.76540 1.17681 1.17214 0.84370 0.91876 0.86735 0.92038 0.87558 0.87532 0.91561 0.91662 0.87771 0.87302 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 14.32 29.01 0.42 0.30 16 2 C -0.16 -0.33 9.50 -36.02 -0.34 -0.67 16 3 C -0.06 -0.18 5.21 -29.03 -0.15 -0.33 16 4 C 0.00 0.00 4.51 -104.50 -0.47 -0.47 16 5 C -0.10 -0.16 9.25 -39.58 -0.37 -0.53 16 6 C -0.01 -0.01 5.42 -104.62 -0.57 -0.58 16 7 C -0.08 0.14 2.81 36.01 0.10 0.25 16 8 O -0.54 0.87 12.75 -35.23 -0.45 0.42 16 9 Si 0.68 -2.09 29.78 -169.99 -5.06 -7.16 16 10 C -0.21 -0.18 7.66 -39.46 -0.30 -0.48 16 11 C 0.13 0.23 5.93 -39.12 -0.23 0.00 16 12 O -0.31 0.06 7.01 -34.23 -0.24 -0.18 16 13 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 14 C 0.04 0.13 4.80 -39.12 -0.19 -0.06 16 15 O -0.64 -2.60 9.18 -54.23 -0.50 -3.10 16 16 S 2.59 11.06 4.69 -107.50 -0.50 10.56 16 17 O -0.92 -6.58 17.43 -67.04 -1.17 -7.74 16 18 O -0.94 -5.39 14.33 -67.04 -0.96 -6.35 16 19 C -0.64 -0.44 3.15 -25.92 -0.08 -0.52 16 20 H 0.16 -0.18 5.82 -51.93 -0.30 -0.49 16 21 C -0.08 0.00 7.04 -25.92 -0.18 -0.18 16 22 C -0.09 0.02 4.26 -90.96 -0.39 -0.37 16 23 H 0.14 -0.41 8.14 -51.93 -0.42 -0.84 16 24 C 0.47 1.23 7.48 36.00 0.27 1.49 16 25 O -0.50 -2.84 15.65 -18.75 -0.29 -3.13 16 26 O -0.36 -0.61 10.56 -39.25 -0.41 -1.03 16 27 C 0.03 0.00 10.56 101.05 1.07 1.06 16 28 C -0.09 -0.05 6.99 -25.92 -0.18 -0.23 16 29 H 0.10 -0.03 8.06 -52.49 -0.42 -0.45 16 30 H 0.10 -0.04 7.84 -52.49 -0.41 -0.45 16 31 H 0.11 0.25 8.06 -52.48 -0.42 -0.17 16 32 H 0.10 0.11 7.72 -51.93 -0.40 -0.29 16 33 H 0.09 0.38 5.46 -51.93 -0.28 0.10 16 34 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 35 H 0.08 -0.32 7.96 -51.93 -0.41 -0.73 16 36 H 0.39 -2.56 8.74 45.56 0.40 -2.17 16 37 H -0.25 0.28 7.11 56.52 0.40 0.68 16 38 H -0.25 0.10 7.11 56.52 0.40 0.50 16 39 H 0.14 -0.10 3.11 -52.49 -0.16 -0.27 16 40 H 0.06 -0.22 7.66 -51.93 -0.40 -0.62 16 41 H 0.11 -0.63 8.14 -51.93 -0.42 -1.05 16 42 H 0.06 -0.25 7.66 -51.93 -0.40 -0.64 16 43 H 0.11 -0.23 7.75 -51.93 -0.40 -0.63 16 44 H 0.11 0.11 7.50 -51.93 -0.39 -0.28 16 45 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 46 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 47 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 48 H 0.11 0.21 7.39 -51.93 -0.38 -0.17 16 49 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 411.94 15.07 6.21 6.21 Total: 0.00 -11.88 411.94 -10.54 -22.42 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: -6.55 Total: -10.53 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.61 Total: -0.39 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -4.02 Total: -21.11 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: -5.06 Total: -7.16 kcal Atomic # 16 Polarization: 11.06 SS G_CDS: -0.50 Total: 10.56 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -11.88 -10.54 -22.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2307266_13206342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.530 kcal (2) G-P(sol) polarization free energy of solvation -11.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds