Wall clock time and date at job start Tue Mar 9 2021 13:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 120.00227 * 2 1 4 4 C 1.50706 * 109.46785 * 125.66230 * 3 2 1 5 5 C 1.38238 * 120.00089 * 266.55487 * 4 3 2 6 6 C 1.38248 * 120.14547 * 180.26035 * 5 4 3 7 7 C 1.50700 * 119.92827 * 179.76066 * 6 5 4 8 8 O 1.42897 * 109.47379 * 299.72204 * 7 6 5 9 9 Si 1.86303 * 109.47080 * 179.72166 * 7 6 5 10 10 C 1.38242 * 120.14796 * 359.48845 * 6 5 4 11 11 C 1.38566 * 119.99697 * 0.25347 * 10 6 5 12 12 O 1.35995 * 120.07450 * 180.02562 * 11 10 6 13 13 C 1.42899 * 116.99886 * 359.97438 * 12 11 10 14 14 C 1.38562 * 119.99813 * 86.30042 * 4 3 2 15 15 O 1.35998 * 120.07350 * 0.02562 * 14 4 3 16 16 S 1.52207 * 113.99810 * 88.98674 * 15 14 4 17 17 O 1.42106 * 104.27246 * 191.83207 * 16 15 14 18 18 O 1.42096 * 104.27828 * 319.68539 * 16 15 14 19 19 C 1.81400 * 104.44859 * 75.76223 * 16 15 14 20 20 H 1.08999 * 112.85036 * 305.50803 * 19 16 15 21 21 C 1.53782 * 113.61499 * 76.82271 * 19 16 15 22 22 C 1.53782 * 87.08109 * 139.97829 * 21 19 16 23 23 H 1.09003 * 113.61282 * 89.11774 * 22 21 19 24 24 C 1.50696 * 113.61171 * 220.01499 * 22 21 19 25 25 O 1.20827 * 120.00018 * 97.50234 * 24 22 21 26 26 O 1.34226 * 120.00378 * 277.49841 * 24 22 21 27 27 C 1.45195 * 117.00546 * 180.02562 * 26 24 22 28 28 C 1.53776 * 87.07904 * 334.56536 * 22 21 19 29 29 H 1.07990 * 119.99975 * 179.97438 * 1 2 3 30 30 H 1.07996 * 119.99496 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.00048 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46844 * 5.66563 * 3 2 1 33 33 H 1.08994 * 109.47336 * 245.66077 * 3 2 1 34 34 H 1.07997 * 119.92947 * 359.97438 * 5 4 3 35 35 H 1.09002 * 109.46784 * 59.72778 * 7 6 5 36 36 H 0.96702 * 114.00362 * 179.97438 * 8 7 6 37 37 H 1.48496 * 110.00044 * 298.68177 * 9 7 6 38 38 H 1.48499 * 110.00009 * 60.00603 * 9 7 6 39 39 H 1.07994 * 120.00533 * 180.23477 * 10 6 5 40 40 H 1.08999 * 109.47315 * 60.00139 * 13 12 11 41 41 H 1.09006 * 109.47268 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.47324 * 300.00384 * 13 12 11 43 43 H 1.09004 * 113.60904 * 254.52905 * 21 19 16 44 44 H 1.08995 * 113.61537 * 25.42503 * 21 19 16 45 45 H 1.09001 * 109.46998 * 300.00091 * 27 26 24 46 46 H 1.08998 * 109.47223 * 59.99663 * 27 26 24 47 47 H 1.08997 * 109.47802 * 179.97438 * 27 26 24 48 48 H 1.08998 * 113.61834 * 270.88197 * 28 22 21 49 49 H 1.09004 * 113.69059 * 139.99824 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0321 1.3259 1.1544 5 6 2.6574 1.8866 2.3611 6 6 3.5453 1.9120 3.4204 7 6 3.1335 2.5294 4.7321 8 8 2.8053 3.9052 4.5288 9 14 4.5389 2.3993 5.9481 10 6 4.8083 1.3674 3.2810 11 6 5.1884 0.7991 2.0758 12 8 6.4302 0.2624 1.9370 13 6 7.2925 0.3194 3.0752 14 6 4.2964 0.7781 1.0079 15 8 4.6651 0.2220 -0.1771 16 16 5.2947 1.2055 -1.1533 17 8 5.3362 0.4984 -2.3852 18 8 4.5165 2.3860 -1.0122 19 6 6.9715 1.4679 -0.5132 20 1 6.9817 1.7854 0.5295 21 6 7.9348 0.3078 -0.8153 22 6 9.0066 1.3745 -1.0952 23 1 9.5743 1.6655 -0.2114 24 6 9.8849 1.0522 -2.2766 25 8 9.6464 1.5377 -3.3570 26 8 10.9322 0.2259 -2.1287 27 6 11.7348 -0.0391 -3.3093 28 6 7.8521 2.3338 -1.4294 29 1 -0.5399 -0.9352 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3596 2.1310 0.1015 33 1 2.6120 1.4080 -0.9363 34 1 1.6703 2.3098 2.4752 35 1 2.2637 2.0024 5.1244 36 1 2.5303 4.3669 5.3327 37 1 4.8687 0.9722 6.1924 38 1 5.7310 3.1138 5.4249 39 1 5.4987 1.3852 4.1112 40 1 6.8332 -0.2160 3.9061 41 1 8.2492 -0.1418 2.8297 42 1 7.4529 1.3598 3.3577 43 1 8.1543 -0.3146 0.0522 44 1 7.6566 -0.2729 -1.6947 45 1 11.1102 -0.4928 -4.0788 46 1 12.1504 0.8964 -3.6836 47 1 12.5464 -0.7195 -3.0518 48 1 7.5513 2.3070 -2.4767 49 1 8.0037 3.3476 -1.0585 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2307266_13206342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:41 Heat of formation + Delta-G solvation = -163.904888 kcal Electronic energy + Delta-G solvation = -38085.251363 eV Core-core repulsion = 33075.128780 eV Total energy + Delta-G solvation = -5010.122583 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.126 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.83695 -42.00988 -40.51761 -39.68023 -39.31531 -38.55884 -37.57924 -37.51363 -37.46974 -36.03157 -32.71436 -31.75611 -29.96730 -28.81842 -27.83442 -27.69841 -27.23080 -26.93407 -23.82206 -23.24920 -23.05371 -21.74703 -20.99459 -20.67545 -20.01074 -19.56950 -18.98844 -18.73094 -18.56730 -18.33666 -18.05482 -17.57883 -17.30741 -16.86917 -16.83986 -16.52014 -16.27339 -16.00242 -15.72899 -15.64419 -15.11592 -14.92434 -14.82417 -14.56781 -14.30242 -14.21067 -14.12664 -13.97133 -13.90431 -13.84660 -13.60976 -13.53678 -13.43961 -13.43196 -13.14449 -13.08967 -12.87850 -12.80480 -12.58336 -12.45713 -12.29853 -12.04516 -11.96423 -11.91572 -11.90461 -11.71118 -11.39769 -10.49585 -10.34581 -10.09519 -9.62072 -4.93272 -1.27548 -0.33369 -0.11258 0.76285 0.95949 1.23113 1.25869 1.60009 1.64809 1.76529 1.92138 2.05567 2.30346 2.54070 2.76214 2.91627 3.10164 3.12497 3.19919 3.48300 3.52191 3.68627 3.76001 3.81044 3.87135 3.93157 3.94884 4.07371 4.15323 4.18722 4.19592 4.22180 4.24351 4.25047 4.32012 4.35085 4.48181 4.51156 4.53216 4.57454 4.59203 4.65018 4.72170 4.76397 4.86552 4.92374 4.99404 5.07445 5.23448 5.23599 5.60221 5.69248 5.86149 6.53832 6.90899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C -0.067 4.067 4 C -0.016 4.016 5 C -0.113 4.113 6 C -0.018 4.018 7 C -0.088 4.088 8 O -0.560 6.560 9 Si 0.766 3.234 10 C -0.213 4.213 11 C 0.139 3.861 12 O -0.310 6.310 13 C 0.001 3.999 14 C 0.009 3.991 15 O -0.648 6.648 16 S 2.579 3.421 17 O -0.964 6.964 18 O -0.969 6.969 19 C -0.617 4.617 20 H 0.186 0.814 21 C -0.087 4.087 22 C -0.084 4.084 23 H 0.176 0.824 24 C 0.464 3.536 25 O -0.538 6.538 26 O -0.356 6.356 27 C 0.025 3.975 28 C -0.102 4.102 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.407 0.593 37 H -0.276 1.276 38 H -0.283 1.283 39 H 0.154 0.846 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 0.582 13.343 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C -0.104 4.104 4 C -0.018 4.018 5 C -0.131 4.131 6 C -0.019 4.019 7 C -0.197 4.197 8 O -0.370 6.370 9 Si 0.669 3.331 10 C -0.231 4.231 11 C 0.090 3.910 12 O -0.223 6.223 13 C -0.093 4.093 14 C -0.033 4.033 15 O -0.607 6.607 16 S 2.680 3.320 17 O -0.963 6.963 18 O -0.968 6.968 19 C -0.727 4.727 20 H 0.204 0.796 21 C -0.126 4.126 22 C -0.103 4.103 23 H 0.193 0.807 24 C 0.309 3.691 25 O -0.428 6.428 26 O -0.272 6.272 27 C -0.068 4.068 28 C -0.140 4.140 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.124 0.876 36 H 0.259 0.741 37 H -0.203 1.203 38 H -0.209 1.209 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.160 0.840 42 H 0.090 0.910 43 H 0.154 0.846 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.151 0.849 48 H 0.105 0.895 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.555 0.009 11.855 12.127 hybrid contribution 0.400 -0.268 -0.998 1.108 sum 2.955 -0.258 10.856 11.254 Atomic orbital electron populations 1.24137 0.94973 1.03553 0.97653 1.22785 0.96645 0.96987 1.03033 1.19963 0.97181 0.98137 0.95138 1.19979 0.91582 0.93260 0.96982 1.20968 1.01874 1.00110 0.90146 1.19768 0.92159 0.93953 0.96015 1.24953 1.10874 0.85886 0.97963 1.86453 1.90287 1.20286 1.40017 0.94032 0.75292 0.79685 0.84080 1.21062 0.98494 1.06609 0.96917 1.18822 0.85907 0.93860 0.92393 1.86182 1.20732 1.74615 1.40760 1.23706 0.94386 1.03817 0.87373 1.17351 0.95381 1.08621 0.81974 1.85689 1.80947 1.58809 1.35286 1.05932 0.78172 0.73310 0.74628 1.93602 1.87620 1.72568 1.42463 1.93606 1.66166 1.51335 1.85665 1.32013 1.18542 1.08673 1.13477 0.79642 1.22673 0.90879 0.94058 1.04945 1.22573 0.92898 0.98300 0.96554 0.80656 1.24068 0.79546 0.75071 0.90461 1.90696 1.70982 1.51272 1.29833 1.86498 1.39152 1.60551 1.40965 1.23571 0.94736 1.02712 0.85791 1.22800 0.92315 1.00288 0.98624 0.86770 0.86839 0.87733 0.87333 0.91545 0.82250 0.87552 0.74075 1.20294 1.20936 0.82897 0.91601 0.83956 0.90977 0.84624 0.89306 0.92341 0.91835 0.84924 0.89467 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 14.32 67.78 0.97 0.65 16 2 C -0.18 -1.10 9.50 25.65 0.24 -0.85 16 3 C -0.07 -0.55 5.21 29.11 0.15 -0.40 16 4 C -0.02 -0.12 4.51 -19.79 -0.09 -0.21 16 5 C -0.11 -0.41 9.25 22.27 0.21 -0.21 16 6 C -0.02 -0.03 5.42 -19.86 -0.11 -0.13 16 7 C -0.09 0.45 2.81 71.24 0.20 0.65 16 8 O -0.56 2.54 12.75 -148.98 -1.90 0.64 16 9 Si 0.77 -5.84 29.78 68.60 2.04 -3.80 16 10 C -0.21 -0.28 7.66 22.35 0.17 -0.11 16 11 C 0.14 0.49 5.93 22.57 0.13 0.62 16 12 O -0.31 0.42 7.01 -79.63 -0.56 -0.14 16 13 C 0.00 -0.01 9.81 113.37 1.11 1.11 16 14 C 0.01 0.08 4.80 22.57 0.11 0.19 16 15 O -0.65 -6.94 9.18 -60.55 -0.56 -7.49 16 16 S 2.58 29.05 4.69 -56.49 -0.27 28.79 16 17 O -0.96 -17.68 17.43 -118.57 -2.07 -19.75 16 18 O -0.97 -14.07 14.33 -118.57 -1.70 -15.77 16 19 C -0.62 -1.01 3.15 31.12 0.10 -0.91 16 20 H 0.19 -0.63 5.82 -2.39 -0.01 -0.65 16 21 C -0.09 0.03 7.04 31.12 0.22 0.25 16 22 C -0.08 0.12 4.26 -11.02 -0.05 0.08 16 23 H 0.18 -1.68 8.14 -2.39 -0.02 -1.70 16 24 C 0.46 2.55 7.48 71.23 0.53 3.08 16 25 O -0.54 -7.01 15.65 21.96 0.34 -6.66 16 26 O -0.36 -1.07 10.56 -51.37 -0.54 -1.61 16 27 C 0.02 -0.01 10.56 113.37 1.20 1.19 16 28 C -0.10 -0.15 6.99 31.12 0.22 0.07 16 29 H 0.11 -0.06 8.06 -2.92 -0.02 -0.09 16 30 H 0.11 -0.10 7.84 -2.91 -0.02 -0.13 16 31 H 0.10 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.11 0.46 7.72 -2.39 -0.02 0.44 16 33 H 0.07 0.83 5.46 -2.39 -0.01 0.82 16 34 H 0.16 0.00 8.06 -2.91 -0.02 -0.03 16 35 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 36 H 0.41 -6.12 8.74 -74.06 -0.65 -6.77 16 37 H -0.28 1.00 7.11 99.48 0.71 1.70 16 38 H -0.28 0.52 7.11 99.48 0.71 1.22 16 39 H 0.15 -0.40 3.11 -2.91 -0.01 -0.41 16 40 H 0.07 -0.58 7.66 -2.39 -0.02 -0.60 16 41 H 0.14 -2.03 8.14 -2.38 -0.02 -2.05 16 42 H 0.07 -0.75 7.66 -2.39 -0.02 -0.77 16 43 H 0.14 -0.86 7.75 -2.38 -0.02 -0.88 16 44 H 0.09 0.34 7.50 -2.39 -0.02 0.32 16 45 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 46 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 47 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.09 0.55 7.39 -2.39 -0.02 0.53 16 49 H 0.13 -0.48 8.14 -2.38 -0.02 -0.50 16 Total: 0.00 -31.85 411.94 0.51 -31.34 By element: Atomic # 1 Polarization: -11.00 SS G_CDS: 0.39 Total: -10.61 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.32 Total: 5.06 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -6.98 Total: -50.78 kcal Atomic # 14 Polarization: -5.84 SS G_CDS: 2.04 Total: -3.80 kcal Atomic # 16 Polarization: 29.05 SS G_CDS: -0.27 Total: 28.79 kcal Total: -31.85 0.51 -31.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2307266_13206342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.566 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds