Wall clock time and date at job start Tue Mar 9 2021 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 C 1.50702 * 109.46851 * 124.99872 * 3 2 1 5 5 C 1.38517 * 120.00112 * 85.00403 * 4 3 2 6 6 O 1.35994 * 120.07303 * 0.02562 * 5 4 3 7 7 S 1.52200 * 113.99853 * 90.00163 * 6 5 4 8 8 O 1.42104 * 104.27982 * 318.93359 * 7 6 5 9 9 O 1.42102 * 104.27874 * 191.07017 * 7 6 5 10 10 C 1.81399 * 104.44812 * 75.00211 * 7 6 5 11 11 C 1.53005 * 109.47445 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.47245 * 179.97438 * 11 10 7 13 13 Si 1.86301 * 109.46942 * 180.02562 * 12 11 10 14 14 C 1.86295 * 109.47343 * 60.00162 * 13 12 11 15 15 C 1.86300 * 109.47008 * 180.02562 * 13 12 11 16 16 C 1.86299 * 109.47106 * 299.99934 * 13 12 11 17 17 C 1.39200 * 119.85581 * 180.29488 * 5 4 3 18 18 O 1.35993 * 120.07264 * 179.72256 * 17 5 4 19 19 C 1.42894 * 116.99757 * 180.02562 * 18 17 5 20 20 C 1.38523 * 119.85008 * 359.42895 * 17 5 4 21 21 C 1.38286 * 120.00037 * 0.56717 * 20 17 5 22 22 C 1.50697 * 119.92721 * 179.70464 * 21 20 17 23 23 O 1.42901 * 109.47220 * 120.02192 * 22 21 20 24 24 Si 1.86308 * 109.46922 * 0.02562 * 22 21 20 25 25 H 1.48489 * 109.47168 * 59.99851 * 24 22 21 26 26 H 1.48503 * 109.46674 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46786 * 299.99858 * 24 22 21 28 28 C 1.38209 * 120.14713 * 359.72708 * 21 20 17 29 29 H 1.07999 * 119.99974 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.99687 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99887 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47042 * 5.00292 * 3 2 1 33 33 H 1.08997 * 109.47219 * 244.99784 * 3 2 1 34 34 H 1.09001 * 109.47190 * 299.99842 * 10 7 6 35 35 H 1.09004 * 109.47089 * 59.99975 * 10 7 6 36 36 H 1.09001 * 109.46962 * 300.00183 * 11 10 7 37 37 H 1.09004 * 109.46832 * 60.00020 * 11 10 7 38 38 H 1.09001 * 109.47372 * 300.00032 * 12 11 10 39 39 H 1.09004 * 109.47108 * 60.00288 * 12 11 10 40 40 H 1.08998 * 109.47456 * 59.99634 * 14 13 12 41 41 H 1.09000 * 109.47314 * 180.02562 * 14 13 12 42 42 H 1.09002 * 109.47039 * 300.00116 * 14 13 12 43 43 H 1.08996 * 109.47484 * 60.00133 * 15 13 12 44 44 H 1.09000 * 109.46936 * 179.97438 * 15 13 12 45 45 H 1.09001 * 109.47083 * 299.99634 * 15 13 12 46 46 H 1.09002 * 109.46890 * 60.00120 * 16 13 12 47 47 H 1.09000 * 109.47207 * 179.97438 * 16 13 12 48 48 H 1.09001 * 109.47467 * 300.00590 * 16 13 12 49 49 H 1.08993 * 109.47202 * 299.99625 * 19 18 17 50 50 H 1.09000 * 109.47645 * 60.00199 * 19 18 17 51 51 H 1.09010 * 109.46980 * 179.97438 * 19 18 17 52 52 H 1.07997 * 119.99714 * 180.29761 * 20 17 5 53 53 H 1.09001 * 109.47141 * 240.02764 * 22 21 20 54 54 H 0.96699 * 113.99384 * 300.00130 * 23 22 21 55 55 H 1.08000 * 119.92672 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1639 5 6 4.2760 0.7606 1.0419 6 8 4.6470 0.1741 -0.1276 7 16 5.3256 1.1211 -1.1070 8 8 4.5732 2.3228 -1.0111 9 8 5.3820 0.3871 -2.3224 10 6 6.9911 1.3571 -0.4282 11 6 7.7826 2.3015 -1.3353 12 6 9.1871 2.5010 -0.7624 13 14 10.1505 3.6515 -1.8665 14 6 9.2793 5.2955 -1.9615 15 6 11.8610 3.8939 -1.1693 16 6 10.2748 2.9151 -3.5732 17 6 5.1552 0.7823 2.1209 18 8 6.3869 0.2170 2.0079 19 6 7.2357 0.2763 3.1559 20 6 4.7749 1.3864 3.3081 21 6 3.5200 1.9558 3.4232 22 6 3.1056 2.6066 4.7176 23 8 2.8031 3.9834 4.4831 24 14 4.4963 2.4777 5.9506 25 1 5.6987 3.1643 5.4141 26 1 4.0876 3.1186 7.2264 27 1 4.8107 1.0470 6.1944 28 6 2.6448 1.9288 2.3539 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 6.9188 1.7878 0.5705 35 1 7.5007 0.3951 -0.3730 36 1 7.8549 1.8704 -2.3338 37 1 7.2732 3.2636 -1.3909 38 1 9.1144 2.9323 0.2361 39 1 9.6967 1.5391 -0.7064 40 1 9.2065 5.7264 -0.9629 41 1 9.8427 5.9685 -2.6078 42 1 8.2786 5.1534 -2.3696 43 1 12.3706 2.9320 -1.1141 44 1 12.4248 4.5667 -1.8155 45 1 11.7887 4.3246 -0.1706 46 1 9.2741 2.7729 -3.9813 47 1 10.8380 3.5884 -4.2194 48 1 10.7845 1.9532 -3.5177 49 1 7.4149 1.3180 3.4218 50 1 6.7547 -0.2342 3.9902 51 1 8.1850 -0.2103 2.9313 52 1 5.4570 1.4088 4.1452 53 1 2.2230 2.1026 5.1115 54 1 3.5447 4.4946 4.1313 55 1 1.6654 2.3742 2.4478 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2307266_14927650.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:49 Heat of formation + Delta-G solvation = -171.791244 kcal Electronic energy + Delta-G solvation = -36224.072321 eV Core-core repulsion = 31671.680084 eV Total energy + Delta-G solvation = -4552.392237 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 402.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.74069 -40.41356 -39.38776 -38.44276 -37.55927 -37.34689 -35.93551 -35.82414 -32.57333 -31.62393 -29.61914 -28.76665 -28.35249 -28.31331 -28.17976 -27.68397 -26.92473 -23.65537 -23.05995 -22.74109 -21.53459 -20.74317 -19.80035 -19.16015 -18.99242 -18.66394 -17.62427 -17.45422 -17.00751 -16.86228 -16.29385 -16.13016 -16.09961 -15.99773 -15.63718 -15.27463 -14.95338 -14.72619 -14.54217 -14.25517 -14.14831 -14.03427 -14.02011 -13.95824 -13.69191 -13.59882 -13.57754 -13.50112 -13.37801 -13.27221 -13.16341 -13.09287 -13.05319 -12.98436 -12.97197 -12.78995 -12.49494 -12.35245 -12.21533 -12.05693 -11.94686 -11.83847 -11.81735 -11.76441 -10.71662 -10.69056 -10.56863 -10.43229 -10.33593 -10.03754 -9.52745 -1.11954 -0.22156 -0.00875 0.94149 1.11617 1.27644 1.43675 1.48443 1.87389 1.90830 1.91665 2.00141 2.01986 2.16482 2.47108 2.73082 2.82791 3.27728 3.29868 3.48477 3.57703 3.68194 3.73501 3.86465 3.94286 4.00217 4.03978 4.14843 4.17771 4.26020 4.29889 4.38641 4.43195 4.59152 4.60351 4.64622 4.67252 4.73907 4.79872 4.80973 4.83273 4.83976 4.85935 4.87286 4.87745 4.88084 4.97259 5.06528 5.08432 5.17463 5.33794 5.44553 5.59358 5.64164 5.65867 5.66826 5.73551 5.97894 6.69013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C -0.068 4.068 4 C -0.017 4.017 5 C 0.010 3.990 6 O -0.657 6.657 7 S 2.567 3.433 8 O -0.970 6.970 9 O -0.974 6.974 10 C -0.613 4.613 11 C -0.119 4.119 12 C -0.408 4.408 13 Si 1.067 2.933 14 C -0.472 4.472 15 C -0.460 4.460 16 C -0.476 4.476 17 C 0.133 3.867 18 O -0.318 6.318 19 C 0.000 4.000 20 C -0.206 4.206 21 C -0.051 4.051 22 C -0.083 4.083 23 O -0.546 6.546 24 Si 0.965 3.035 25 H -0.238 1.238 26 H -0.270 1.270 27 H -0.247 1.247 28 C -0.111 4.111 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.131 0.869 52 H 0.162 0.838 53 H 0.136 0.864 54 H 0.392 0.608 55 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 1.673 7.613 8.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C -0.104 4.104 4 C -0.020 4.020 5 C -0.032 4.032 6 O -0.616 6.616 7 S 2.668 3.332 8 O -0.969 6.969 9 O -0.972 6.972 10 C -0.744 4.744 11 C -0.158 4.158 12 C -0.493 4.493 13 Si 1.259 2.741 14 C -0.578 4.578 15 C -0.567 4.567 16 C -0.582 4.582 17 C 0.085 3.915 18 O -0.231 6.231 19 C -0.094 4.094 20 C -0.224 4.224 21 C -0.052 4.052 22 C -0.193 4.193 23 O -0.353 6.353 24 Si 0.787 3.213 25 H -0.160 1.160 26 H -0.195 1.195 27 H -0.171 1.171 28 C -0.129 4.129 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.149 0.851 52 H 0.179 0.821 53 H 0.154 0.846 54 H 0.241 0.759 55 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.766 1.131 7.737 8.680 hybrid contribution 0.684 -0.167 -0.633 0.947 sum 4.450 0.964 7.104 8.438 Atomic orbital electron populations 1.24120 0.95076 1.03417 0.98032 1.22803 0.96582 0.97212 1.02698 1.19955 0.97328 0.97830 0.95334 1.19930 0.91450 0.93570 0.97026 1.17426 0.95878 1.07438 0.82502 1.85686 1.80156 1.59211 1.36572 1.06271 0.78978 0.73219 0.74703 1.93598 1.67743 1.49598 1.85913 1.93584 1.87953 1.71743 1.43940 1.30708 1.19314 1.11773 1.12630 1.21237 0.97719 0.98601 0.98224 1.26232 1.00293 1.12209 1.10587 0.78330 0.65621 0.65108 0.64998 1.26402 1.08199 1.18473 1.04695 1.26230 1.18689 1.04792 1.06958 1.26463 1.04349 1.07383 1.19957 1.18924 0.85928 0.93905 0.92789 1.86185 1.22323 1.73429 1.41195 1.23697 0.94365 1.04350 0.86966 1.21238 0.98970 1.04897 0.97280 1.20529 0.92425 0.95221 0.97044 1.25178 1.11989 0.84435 0.97719 1.86529 1.42812 1.18445 1.87508 0.85480 0.76877 0.81392 0.77565 1.16049 1.19524 1.17111 1.20950 1.01674 1.00028 0.90271 0.86867 0.87059 0.87931 0.87375 0.91259 0.82930 0.82527 0.90054 0.89519 0.88731 0.89000 0.90798 0.91466 0.91551 0.91083 0.91580 0.90865 0.91660 0.91455 0.91091 0.90181 0.91016 0.85137 0.82089 0.84609 0.75900 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 14.32 67.77 0.97 0.68 16 2 C -0.17 -0.97 9.50 25.64 0.24 -0.73 16 3 C -0.07 -0.44 5.24 29.10 0.15 -0.29 16 4 C -0.02 -0.10 4.53 -19.78 -0.09 -0.18 16 5 C 0.01 0.07 4.79 22.57 0.11 0.17 16 6 O -0.66 -6.18 9.18 -60.50 -0.56 -6.74 16 7 S 2.57 22.95 4.81 -56.49 -0.27 22.68 16 8 O -0.97 -11.07 14.42 -118.57 -1.71 -12.78 16 9 O -0.97 -15.93 18.09 -118.57 -2.15 -18.07 16 10 C -0.61 0.12 4.53 71.98 0.33 0.45 16 11 C -0.12 0.19 4.59 30.59 0.14 0.33 16 12 C -0.41 2.50 4.45 71.98 0.32 2.82 16 13 Si 1.07 -6.69 12.19 68.60 0.84 -5.86 16 14 C -0.47 1.48 8.65 113.37 0.98 2.46 16 15 C -0.46 2.21 8.65 113.37 0.98 3.19 16 16 C -0.48 1.00 8.65 113.37 0.98 1.98 16 17 C 0.13 0.18 5.83 22.57 0.13 0.31 16 18 O -0.32 0.58 7.54 -79.63 -0.60 -0.02 16 19 C 0.00 0.00 9.81 113.37 1.11 1.12 16 20 C -0.21 0.55 7.66 22.35 0.17 0.72 16 21 C -0.05 0.12 5.39 -19.86 -0.11 0.01 16 22 C -0.08 0.46 2.82 71.24 0.20 0.66 16 23 O -0.55 2.14 12.77 -148.98 -1.90 0.24 16 24 Si 0.96 -6.22 25.07 68.60 1.72 -4.50 16 25 H -0.24 1.93 7.11 99.48 0.71 2.64 16 26 H -0.27 0.60 7.11 99.48 0.71 1.31 16 27 H -0.25 1.59 7.11 99.48 0.71 2.30 16 28 C -0.11 -0.08 9.24 22.28 0.21 0.13 16 29 H 0.11 -0.13 7.84 -2.91 -0.02 -0.15 16 30 H 0.11 -0.04 8.06 -2.91 -0.02 -0.06 16 31 H 0.10 0.73 8.06 -2.91 -0.02 0.71 16 32 H 0.11 0.26 7.70 -2.39 -0.02 0.24 16 33 H 0.07 0.73 5.53 -2.39 -0.01 0.72 16 34 H 0.15 -0.58 6.03 -2.39 -0.01 -0.59 16 35 H 0.16 -0.52 8.10 -2.39 -0.02 -0.54 16 36 H 0.08 -0.14 7.79 -2.39 -0.02 -0.16 16 37 H 0.09 -0.25 7.79 -2.38 -0.02 -0.27 16 38 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 39 H 0.09 -0.70 7.96 -2.38 -0.02 -0.72 16 40 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.17 7.96 -2.39 -0.02 -0.18 16 42 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 43 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 44 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 46 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 47 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 48 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 49 H 0.08 -1.02 7.65 -2.39 -0.02 -1.04 16 50 H 0.07 -0.77 7.68 -2.39 -0.02 -0.79 16 51 H 0.13 -1.72 8.14 -2.38 -0.02 -1.74 16 52 H 0.16 -1.25 3.11 -2.91 -0.01 -1.26 16 53 H 0.14 -1.01 7.96 -2.39 -0.02 -1.03 16 54 H 0.39 -4.00 8.70 -74.06 -0.64 -4.64 16 55 H 0.16 -0.35 8.06 -2.91 -0.02 -0.37 16 Total: 0.00 -22.80 449.50 3.19 -19.61 By element: Atomic # 1 Polarization: -9.39 SS G_CDS: 0.99 Total: -8.40 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.83 Total: 13.83 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -6.91 Total: -37.37 kcal Atomic # 14 Polarization: -12.91 SS G_CDS: 2.56 Total: -10.35 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -0.27 Total: 22.68 kcal Total: -22.80 3.19 -19.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2307266_14927650.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.179 kcal (2) G-P(sol) polarization free energy of solvation -22.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds