Wall clock time and date at job start Tue Mar 9 2021 13:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47405 * 2 1 4 4 H 1.48499 * 109.46992 * 60.00095 * 3 2 1 5 5 H 1.48500 * 109.47004 * 180.02562 * 3 2 1 6 6 H 1.48506 * 109.46693 * 300.00399 * 3 2 1 7 7 C 1.50692 * 109.47343 * 120.00354 * 2 1 3 8 8 C 1.37891 * 119.96805 * 255.20149 * 7 2 1 9 9 C 1.39399 * 119.93429 * 179.97438 * 8 7 2 10 10 C 1.48358 * 120.06358 * 180.02562 * 9 8 7 11 11 C 1.39362 * 120.12035 * 0.27818 * 10 9 8 12 12 C 1.38011 * 119.87225 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.12473 * 0.02562 * 12 11 10 14 14 C 1.38325 * 120.24874 * 359.97438 * 13 12 11 15 15 C 1.38011 * 120.12268 * 359.74506 * 14 13 12 16 16 C 1.39355 * 119.87114 * 0.02562 * 9 8 7 17 17 C 1.37925 * 119.93660 * 359.97438 * 16 9 8 18 18 C 1.38812 * 120.06330 * 359.74719 * 17 16 9 19 19 O 1.35879 * 119.93595 * 179.97438 * 18 17 16 20 20 S 1.52198 * 114.00066 * 275.51796 * 19 18 17 21 21 O 1.42097 * 106.39854 * 188.57705 * 20 19 18 22 22 O 1.42092 * 106.40197 * 321.50085 * 20 19 18 23 23 C 1.76203 * 107.21809 * 75.04009 * 20 19 18 24 24 C 1.38237 * 120.00043 * 262.98798 * 23 20 19 25 25 C 1.38235 * 119.99891 * 180.02562 * 24 23 20 26 26 C 1.38233 * 120.00027 * 359.96910 * 25 24 23 27 Xx 1.80997 * 119.99819 * 179.97438 * 26 25 24 28 27 F 9.79295 * 133.31043 * 252.17125 * 7 1 2 29 28 F 1.60998 * 90.00131 * 135.00155 * 27 26 25 30 29 F 1.60991 * 90.00290 * 315.00230 * 27 26 25 31 30 F 1.60998 * 90.00319 * 224.99866 * 27 26 25 32 31 F 1.61000 * 90.00103 * 45.00131 * 27 26 25 33 32 C 1.38234 * 120.00178 * 359.96274 * 26 25 24 34 33 C 1.38233 * 120.00113 * 82.70918 * 23 20 19 35 34 H 0.96701 * 114.00061 * 174.25544 * 1 2 3 36 35 H 1.09003 * 109.46363 * 239.99826 * 2 1 3 37 36 H 1.08001 * 120.02963 * 359.96119 * 8 7 2 38 37 H 1.07999 * 120.06117 * 359.95444 * 11 10 9 39 38 H 1.08001 * 119.93787 * 179.97438 * 12 11 10 40 39 H 1.08005 * 119.87369 * 179.97438 * 13 12 11 41 40 H 1.08000 * 119.93471 * 180.02562 * 14 13 12 42 41 H 1.07992 * 120.06303 * 180.02562 * 15 14 13 43 42 H 1.08006 * 120.03246 * 179.97438 * 16 9 8 44 43 H 1.07999 * 119.97094 * 179.97438 * 17 16 9 45 44 H 1.07995 * 120.00064 * 359.97306 * 24 23 20 46 45 H 1.07998 * 119.99725 * 179.97438 * 25 24 23 47 46 H 1.07999 * 120.00283 * 180.02562 * 33 26 25 48 47 H 1.08008 * 119.99943 * 0.21071 * 34 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 -0.0006 6 1 1.5549 2.4564 -1.2125 7 6 1.9313 -0.7104 1.2303 8 6 2.4486 0.0159 2.2821 9 6 2.9127 -0.6420 3.4202 10 6 3.4692 0.1366 4.5537 11 6 3.5244 1.5275 4.4865 12 6 4.0427 2.2468 5.5442 13 6 4.5074 1.5897 6.6692 14 6 4.4550 0.2093 6.7413 15 6 3.9335 -0.5198 5.6920 16 6 2.8527 -2.0325 3.4910 17 6 2.3343 -2.7537 2.4358 18 6 1.8676 -2.0955 1.3062 19 8 1.3579 -2.8086 0.2680 20 16 2.4092 -3.3244 -0.7042 21 8 1.7012 -3.8605 -1.8134 22 8 3.3817 -2.2956 -0.8264 23 6 3.2173 -4.6831 0.0741 24 6 4.4181 -4.4890 0.7309 25 6 5.0523 -5.5551 1.3410 26 6 4.4855 -6.8150 1.2948 27 9 6.0497 -9.4543 2.8072 28 9 3.9133 -8.6846 2.7249 29 9 6.7192 -7.7373 1.4612 30 9 5.0378 -9.1198 0.7936 31 9 5.5947 -7.3021 3.3925 32 6 3.2840 -7.0088 0.6392 33 6 2.6477 -5.9419 0.0328 34 1 -0.3933 -0.8790 -0.0884 35 1 1.7922 -0.5139 -0.8900 36 1 2.4944 1.0933 2.2242 37 1 3.1626 2.0415 3.6083 38 1 4.0864 3.3247 5.4931 39 1 4.9125 2.1566 7.4944 40 1 4.8189 -0.2985 7.6223 41 1 3.8927 -1.5974 5.7495 42 1 3.2119 -2.5449 4.3713 43 1 2.2879 -3.8313 2.4899 44 1 4.8611 -3.5048 0.7667 45 1 5.9907 -5.4035 1.8538 46 1 2.8409 -7.9930 0.6035 47 1 1.7089 -6.0933 -0.4795 RHF calculation, no. of doubly occupied orbitals= 81 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_2516932_8643202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:26:33 Heat of formation + Delta-G solvation = 332.741944 kcal Electronic energy + Delta-G solvation = -45822.955957 eV Core-core repulsion = 39200.349754 eV Total energy + Delta-G solvation = -6622.606204 eV No. of doubly occupied orbitals = 81 Molecular weight (most abundant/longest-lived isotopes) = 464.072 amu Computer time = 29.66 seconds Orbital eigenvalues (eV) -44.46115 -44.31539 -44.26416 -44.16973 -43.65323 -42.66501 -41.33244 -40.57918 -39.07904 -38.78960 -37.74057 -37.44737 -33.59575 -33.39710 -33.23244 -32.89452 -31.78224 -29.78935 -27.21101 -25.38296 -24.87388 -24.70544 -24.06802 -22.79910 -22.59551 -21.44939 -20.48831 -19.49011 -19.04106 -18.60118 -18.20764 -17.71497 -17.54116 -16.99339 -16.69263 -16.57748 -16.27871 -16.12787 -15.75484 -15.60251 -15.56304 -15.53898 -15.31460 -15.19216 -15.15236 -14.83172 -14.80807 -14.60429 -14.47897 -14.34500 -14.29616 -14.27061 -14.23858 -14.19921 -14.11293 -14.06348 -13.98078 -13.78516 -13.68594 -13.64384 -13.57317 -13.37886 -13.25546 -13.20227 -13.02004 -12.72129 -12.39840 -12.23162 -12.16239 -12.03768 -12.00638 -11.81342 -11.60125 -11.46484 -11.34058 -11.28969 -11.12056 -10.79730 -10.25077 -9.88878 -9.16036 -5.33806 -4.87120 -3.47600 -1.62672 -1.33066 -0.79149 -0.53919 -0.04449 0.47169 0.63624 0.84989 1.06713 1.34509 1.43462 1.48529 1.89157 2.10842 2.21992 2.36384 2.55080 2.65716 2.97507 3.09262 3.20169 3.20514 3.35603 3.43606 3.64493 3.67981 3.72966 3.83850 3.89514 3.93116 3.95929 4.02615 4.07812 4.16639 4.17742 4.29174 4.32153 4.45649 4.53093 4.58899 4.62846 4.63862 4.85497 4.89033 5.05562 5.08107 5.12840 5.45316 5.57881 5.59873 5.61341 6.03192 6.51862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.114 4.114 3 Si 1.009 2.991 4 H -0.244 1.244 5 H -0.227 1.227 6 H -0.265 1.265 7 C -0.085 4.085 8 C -0.112 4.112 9 C -0.008 4.008 10 C -0.074 4.074 11 C -0.120 4.120 12 C -0.129 4.129 13 C -0.119 4.119 14 C -0.129 4.129 15 C -0.105 4.105 16 C -0.086 4.086 17 C -0.111 4.111 18 C 0.053 3.947 19 O -0.643 6.643 20 S 2.686 3.314 21 O -0.930 6.930 22 O -0.942 6.942 23 C -0.698 4.698 24 C 0.057 3.943 25 C -0.122 4.122 26 C 0.388 3.612 27 F -0.203 7.203 28 F -0.159 7.159 29 F -0.161 7.161 30 F -0.161 7.161 31 F -0.157 7.157 32 C -0.126 4.126 33 C 0.064 3.936 34 H 0.382 0.618 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.224 0.776 45 H 0.205 0.795 46 H 0.203 0.797 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 8.508 1.064 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.222 4.222 3 Si 0.827 3.173 4 H -0.167 1.167 5 H -0.149 1.149 6 H -0.189 1.189 7 C -0.088 4.088 8 C -0.130 4.130 9 C -0.009 4.009 10 C -0.074 4.074 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.137 4.137 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.104 4.104 17 C -0.130 4.130 18 C 0.012 3.988 19 O -0.603 6.603 20 S 2.776 3.224 21 O -0.928 6.928 22 O -0.941 6.941 23 C -0.779 4.779 24 C 0.040 3.960 25 C -0.140 4.140 26 C 0.382 3.618 27 F -0.203 7.203 28 F -0.158 7.158 29 F -0.160 7.160 30 F -0.159 7.159 31 F -0.156 7.156 32 C -0.143 4.143 33 C 0.046 3.954 34 H 0.231 0.769 35 H 0.101 0.899 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.191 0.809 43 H 0.193 0.807 44 H 0.240 0.760 45 H 0.222 0.778 46 H 0.220 0.780 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.192 10.356 0.576 10.852 hybrid contribution 0.604 -3.097 0.708 3.234 sum -2.588 7.259 1.283 7.813 Atomic orbital electron populations 1.86731 1.16290 1.35356 1.96486 1.25574 0.85408 1.15316 0.95894 0.84557 0.80246 0.71346 0.81150 1.16736 1.14927 1.18922 1.20287 0.98425 0.92460 0.97608 1.21246 0.98454 1.01011 0.92289 1.19039 0.95473 0.93886 0.92454 1.18810 1.01321 0.93188 0.94074 1.21518 0.99198 0.93535 0.99528 1.21397 0.98554 1.01160 0.93625 1.21624 0.98408 0.95264 0.98429 1.21460 0.99308 0.94401 0.99484 1.21548 0.97155 1.01354 0.92247 1.21493 0.97559 0.92141 0.99211 1.21621 0.97580 1.02748 0.91081 1.18024 1.04494 0.89057 0.87264 1.85733 1.56679 1.71210 1.46628 1.02636 0.72799 0.73524 0.73404 1.93700 1.72024 1.79996 1.47100 1.93681 1.62272 1.53297 1.84812 1.31902 1.10277 1.18335 1.17432 1.21694 0.89557 0.98202 0.86596 1.22186 1.05412 0.84238 1.02133 1.28055 0.85248 0.58442 0.90046 2.00000 1.51524 1.77630 1.91149 1.99920 1.29130 1.89876 1.96837 1.99921 1.54287 1.61852 1.99917 1.99920 1.62477 1.83040 1.70474 1.99920 1.80362 1.50512 1.84789 1.22213 0.90638 1.05072 0.96410 1.21627 0.99065 0.85021 0.89666 0.76871 0.89903 0.83855 0.85040 0.84375 0.84515 0.84029 0.83111 0.80908 0.80723 0.76006 0.77787 0.78020 0.75921 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 492. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.32 12.63 -148.98 -1.88 -1.56 16 2 C -0.11 0.18 2.27 71.23 0.16 0.34 16 3 Si 1.01 -1.51 25.75 68.60 1.77 0.26 16 4 H -0.24 0.53 6.72 99.48 0.67 1.20 16 5 H -0.23 0.75 7.11 99.48 0.71 1.46 16 6 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 7 C -0.08 0.30 4.85 -19.80 -0.10 0.21 16 8 C -0.11 0.46 8.03 22.47 0.18 0.64 16 9 C -0.01 0.05 5.88 -20.03 -0.12 -0.07 16 10 C -0.07 0.33 5.88 -20.04 -0.12 0.21 16 11 C -0.12 0.39 9.43 22.49 0.21 0.61 16 12 C -0.13 0.47 10.03 22.24 0.22 0.70 16 13 C -0.12 0.50 10.04 22.31 0.22 0.73 16 14 C -0.13 0.68 10.03 22.24 0.22 0.90 16 15 C -0.11 0.66 9.43 22.49 0.21 0.88 16 16 C -0.09 0.97 9.42 22.46 0.21 1.18 16 17 C -0.11 1.35 8.44 22.33 0.19 1.54 16 18 C 0.05 -0.39 4.72 22.56 0.11 -0.28 16 19 O -0.64 5.55 9.12 -61.46 -0.56 4.99 16 20 S 2.69 -21.63 5.15 -56.49 -0.29 -21.92 16 21 O -0.93 2.22 17.48 -118.78 -2.08 0.15 16 22 O -0.94 4.67 14.40 -118.78 -1.71 2.96 16 23 C -0.70 9.68 4.73 22.27 0.11 9.78 16 24 C 0.06 -0.90 8.56 22.27 0.19 -0.71 16 25 C -0.12 1.44 8.62 22.27 0.19 1.63 16 26 C 0.39 -2.06 4.82 22.27 0.11 -1.95 16 27 F -0.20 -4.47 16.67 44.97 0.75 -3.72 16 28 F -0.16 -1.63 15.29 44.97 0.69 -0.94 16 29 F -0.16 -1.82 15.33 44.97 0.69 -1.13 16 30 F -0.16 -1.86 15.32 44.97 0.69 -1.17 16 31 F -0.16 -1.50 15.31 44.97 0.69 -0.81 16 32 C -0.13 1.42 8.62 22.27 0.19 1.61 16 33 C 0.06 -1.01 9.52 22.27 0.21 -0.79 16 34 H 0.38 -2.32 8.73 -74.06 -0.65 -2.97 16 35 H 0.08 -0.27 6.25 -2.39 -0.01 -0.28 16 36 H 0.14 -0.71 3.02 -2.91 -0.01 -0.72 16 37 H 0.13 -0.74 6.20 -2.91 -0.02 -0.76 16 38 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 39 H 0.14 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.14 -1.23 8.06 -2.91 -0.02 -1.25 16 41 H 0.15 -1.80 6.20 -2.91 -0.02 -1.82 16 42 H 0.17 -2.84 6.20 -2.91 -0.02 -2.86 16 43 H 0.18 -3.31 7.38 -2.91 -0.02 -3.33 16 44 H 0.22 -4.60 7.48 -2.91 -0.02 -4.62 16 45 H 0.21 -2.77 7.40 -2.91 -0.02 -2.79 16 46 H 0.20 -2.56 7.40 -2.91 -0.02 -2.58 16 47 H 0.22 -4.77 7.79 -2.91 -0.02 -4.80 16 Total: 0.00 -36.04 424.94 2.54 -33.50 By element: Atomic # 1 Polarization: -28.91 SS G_CDS: 1.18 Total: -27.73 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 2.61 Total: 17.14 kcal Atomic # 8 Polarization: 12.76 SS G_CDS: -6.23 Total: 6.53 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 3.50 Total: -7.78 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 1.77 Total: 0.26 kcal Atomic # 16 Polarization: -21.63 SS G_CDS: -0.29 Total: -21.92 kcal Total: -36.04 2.54 -33.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_2516932_8643202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 366.241 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 330.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 332.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.66 seconds