Wall clock time and date at job start Tue Mar 9 2021 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 S 1.52205 * 114.00003 * 90.00387 * 14 13 6 16 16 O 1.42098 * 104.27891 * 191.07008 * 15 14 13 17 17 O 1.42101 * 104.27407 * 318.93115 * 15 14 13 18 18 C 1.81407 * 104.44877 * 74.99875 * 15 14 13 19 19 C 1.52998 * 109.46936 * 180.02562 * 18 15 14 20 20 C 1.52999 * 109.46895 * 180.02562 * 19 18 15 21 21 Si 1.86304 * 109.47023 * 180.02562 * 20 19 18 22 22 C 1.86296 * 109.47134 * 59.99568 * 21 20 19 23 23 C 1.86301 * 109.47035 * 179.97438 * 21 20 19 24 24 C 1.86308 * 109.46811 * 299.99500 * 21 20 19 25 25 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 26 26 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 27 27 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 28 28 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 31 31 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 32 32 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 33 33 H 1.09001 * 109.46977 * 300.00009 * 18 15 14 34 34 H 1.08999 * 109.47013 * 60.00366 * 18 15 14 35 35 H 1.08997 * 109.47172 * 300.00204 * 19 18 15 36 36 H 1.08999 * 109.47142 * 60.00235 * 19 18 15 37 37 H 1.09001 * 109.46826 * 299.99681 * 20 19 18 38 38 H 1.08999 * 109.47206 * 60.00064 * 20 19 18 39 39 H 1.09000 * 109.47091 * 60.00889 * 22 21 20 40 40 H 1.09007 * 109.46634 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47350 * 299.99839 * 22 21 20 42 42 H 1.08999 * 109.47128 * 59.99839 * 23 21 20 43 43 H 1.09000 * 109.47162 * 179.97438 * 23 21 20 44 44 H 1.08997 * 109.47272 * 299.99755 * 23 21 20 45 45 H 1.09002 * 109.46499 * 60.00428 * 24 21 20 46 46 H 1.09000 * 109.46945 * 179.97438 * 24 21 20 47 47 H 1.08999 * 109.47479 * 300.00239 * 24 21 20 48 48 H 1.07995 * 120.05190 * 179.97438 * 25 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 16 6.0317 2.6289 1.3913 16 8 7.3922 2.9691 1.1623 17 8 5.1768 3.4873 2.1341 18 6 5.8943 0.9215 1.9886 19 6 6.4879 0.8241 3.3953 20 6 6.3726 -0.6161 3.8988 21 14 7.0948 -0.7347 5.6121 22 6 6.1633 0.4006 6.7585 23 6 6.9536 -2.4881 6.2255 24 6 8.8889 -0.2349 5.5656 25 6 3.4305 1.2840 -0.0001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2123 2.3184 0.0005 30 1 1.3281 4.5115 0.0113 31 1 4.7897 5.0225 0.7288 32 1 3.8355 5.3143 -1.9976 33 1 4.8444 0.6298 2.0166 34 1 6.4383 0.2569 1.3174 35 1 7.5377 1.1160 3.3677 36 1 5.9435 1.4886 4.0663 37 1 5.3229 -0.9084 3.9264 38 1 6.9172 -1.2803 3.2278 39 1 5.1137 0.1081 6.7858 40 1 6.5862 0.3315 7.7609 41 1 6.2455 1.4266 6.3998 42 1 7.4983 -3.1526 5.5548 43 1 7.3766 -2.5576 7.2277 44 1 5.9039 -2.7802 6.2528 45 1 8.9710 0.7912 5.2069 46 1 9.3114 -0.3038 6.5681 47 1 9.4339 -0.8990 4.8949 48 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_575378_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:32:18 Heat of formation + Delta-G solvation = -189.291099 kcal Electronic energy + Delta-G solvation = -29813.983009 eV Core-core repulsion = 25700.133300 eV Total energy + Delta-G solvation = -4113.849709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.56066 -40.69557 -38.77370 -38.42810 -37.44846 -37.18516 -35.89742 -32.60642 -31.48403 -29.62240 -28.61507 -28.37660 -28.31173 -28.22495 -26.37826 -24.80857 -23.17106 -22.82511 -21.51773 -19.95894 -19.08880 -18.92098 -18.28205 -17.97437 -17.35563 -16.98753 -16.74113 -16.52380 -16.11273 -15.83625 -15.77184 -15.21357 -14.94424 -14.78489 -14.35223 -14.17231 -14.10298 -14.04604 -13.97745 -13.72910 -13.60222 -13.59407 -13.42533 -13.40310 -13.35257 -13.23453 -13.15279 -13.05759 -12.98975 -12.98560 -12.36221 -12.24092 -12.14366 -12.00166 -11.84420 -11.83222 -11.66720 -10.71812 -10.69042 -10.51066 -10.45994 -10.25348 -9.46383 -1.19706 -0.14780 -0.02272 0.86695 1.05217 1.34377 1.50548 1.88934 1.89696 2.00426 2.01247 2.09990 2.26656 2.46612 2.72460 2.77364 3.39434 3.42131 3.53232 3.60514 3.64272 3.78955 3.80411 4.06811 4.13241 4.14001 4.35393 4.38339 4.43048 4.44313 4.60172 4.70245 4.75965 4.77668 4.81160 4.82390 4.83429 4.86161 4.86947 4.87476 4.87990 4.97121 5.01844 5.07048 5.38060 5.43975 5.59237 5.66091 5.66685 6.18684 6.66153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.150 3.850 4 C -0.175 4.175 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.116 4.116 8 O -0.552 6.552 9 Si 0.984 3.016 10 H -0.246 1.246 11 H -0.272 1.272 12 H -0.211 1.211 13 C 0.107 3.893 14 O -0.664 6.664 15 S 2.571 3.429 16 O -0.968 6.968 17 O -0.968 6.968 18 C -0.625 4.625 19 C -0.120 4.120 20 C -0.411 4.411 21 Si 1.069 2.931 22 C -0.472 4.472 23 C -0.462 4.462 24 C -0.475 4.475 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.177 0.823 30 H 0.164 0.836 31 H 0.099 0.901 32 H 0.391 0.609 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 -5.235 0.562 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.103 3.897 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.148 4.148 7 C -0.224 4.224 8 O -0.359 6.359 9 Si 0.803 3.197 10 H -0.170 1.170 11 H -0.197 1.197 12 H -0.133 1.133 13 C 0.066 3.934 14 O -0.622 6.622 15 S 2.673 3.327 16 O -0.966 6.966 17 O -0.967 6.967 18 C -0.756 4.756 19 C -0.159 4.159 20 C -0.497 4.497 21 Si 1.261 2.739 22 C -0.578 4.578 23 C -0.568 4.568 24 C -0.581 4.581 25 C -0.194 4.194 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.194 0.806 30 H 0.181 0.819 31 H 0.117 0.883 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.720 -4.038 0.861 9.648 hybrid contribution 0.414 -0.783 -0.313 0.940 sum -8.306 -4.821 0.548 9.619 Atomic orbital electron populations 1.23523 0.75441 1.06187 1.03137 1.86099 1.24106 1.25494 1.87825 1.18669 0.90990 0.85641 0.94374 1.21797 1.02672 0.90699 1.04272 1.21124 0.91746 0.99819 0.96091 1.20511 0.94942 0.95081 1.04267 1.25526 1.07791 0.99986 0.89116 1.86552 1.39086 1.93686 1.16595 0.85266 0.76846 0.75591 0.81991 1.16971 1.19737 1.13312 1.17640 0.76080 0.94052 1.05650 1.85699 1.27001 1.92317 1.57230 1.06078 0.73875 0.79694 0.73087 1.93600 1.36038 1.83892 1.83087 1.93585 1.66261 1.64485 1.72323 1.30794 1.13607 1.21620 1.09604 1.21234 1.02088 1.01125 0.91442 1.26258 1.08942 0.96095 1.18375 0.78304 0.64965 0.65616 0.65040 1.26400 1.09151 1.11017 1.11197 1.26253 1.04700 1.19676 1.06208 1.26449 1.21529 1.05676 1.04422 1.20620 0.93802 0.97048 1.07911 0.90682 0.90829 0.86354 0.80573 0.81916 0.88302 0.75955 0.82279 0.81953 0.89785 0.89237 0.88794 0.88986 0.90872 0.91446 0.91436 0.91132 0.91539 0.90971 0.91539 0.91436 0.91083 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.32 1.00 10.49 -92.40 -0.97 0.03 16 3 C 0.15 -0.26 6.68 22.49 0.15 -0.11 16 4 C -0.18 0.81 9.04 22.38 0.20 1.02 16 5 C -0.07 0.13 8.65 22.24 0.19 0.32 16 6 C -0.15 -0.66 4.68 -19.75 -0.09 -0.75 16 7 C -0.12 -0.80 2.23 71.23 0.16 -0.64 16 8 O -0.55 -3.91 12.88 -148.98 -1.92 -5.83 16 9 Si 0.98 1.32 25.48 68.60 1.75 3.07 16 10 H -0.25 -0.49 7.11 99.48 0.71 0.22 16 11 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 12 H -0.21 1.03 6.74 99.48 0.67 1.70 16 13 C 0.11 0.59 4.78 22.49 0.11 0.70 16 14 O -0.66 -5.75 9.47 -61.48 -0.58 -6.33 16 15 S 2.57 20.35 4.93 -56.49 -0.28 20.08 16 16 O -0.97 -15.31 18.09 -118.57 -2.15 -17.46 16 17 O -0.97 -10.28 14.24 -118.57 -1.69 -11.97 16 18 C -0.63 1.29 5.46 71.98 0.39 1.69 16 19 C -0.12 0.27 4.59 30.59 0.14 0.41 16 20 C -0.41 2.39 4.45 71.98 0.32 2.71 16 21 Si 1.07 -6.35 12.19 68.60 0.84 -5.51 16 22 C -0.47 1.37 8.65 113.37 0.98 2.35 16 23 C -0.46 1.88 8.65 113.37 0.98 2.86 16 24 C -0.48 0.98 8.65 113.37 0.98 1.96 16 25 C -0.17 -0.08 8.40 22.46 0.19 0.10 16 26 H 0.07 -0.95 7.66 -2.39 -0.02 -0.97 16 27 H 0.07 -0.92 7.66 -2.39 -0.02 -0.94 16 28 H 0.12 -1.49 8.14 -2.39 -0.02 -1.51 16 29 H 0.18 -2.04 6.29 -2.91 -0.02 -2.06 16 30 H 0.16 -1.12 4.87 -2.91 -0.01 -1.13 16 31 H 0.10 1.13 5.42 -2.39 -0.01 1.12 16 32 H 0.39 -0.96 8.70 -74.06 -0.64 -1.60 16 33 H 0.16 -1.01 6.60 -2.39 -0.02 -1.03 16 34 H 0.16 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 36 H 0.09 -0.33 7.79 -2.39 -0.02 -0.34 16 37 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 38 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 41 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 42 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 43 H 0.07 -0.21 7.96 -2.39 -0.02 -0.22 16 44 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 45 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 46 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 47 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 48 H 0.17 -0.68 7.49 -2.91 -0.02 -0.70 16 Total: 0.00 -24.76 397.27 1.85 -22.91 By element: Atomic # 1 Polarization: -13.63 SS G_CDS: 1.04 Total: -12.59 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.82 Total: 13.61 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -7.30 Total: -41.56 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: 2.58 Total: -2.44 kcal Atomic # 16 Polarization: 20.35 SS G_CDS: -0.28 Total: 20.08 kcal Total: -24.76 1.85 -22.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_575378_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.385 kcal (2) G-P(sol) polarization free energy of solvation -24.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds