Wall clock time and date at job start Tue Mar 9 2021 13:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38122 * 119.97385 * 2 1 4 4 C 1.38754 * 119.94155 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.05037 * 180.02562 * 4 3 2 6 6 S 1.52201 * 114.00216 * 277.43805 * 5 4 3 7 7 O 1.42094 * 104.27765 * 192.70614 * 6 5 4 8 8 O 1.42097 * 104.27581 * 320.56995 * 6 5 4 9 9 C 1.81402 * 104.44495 * 76.63786 * 6 5 4 10 10 C 1.53002 * 109.46798 * 176.49825 * 9 6 5 11 11 C 1.53007 * 109.46890 * 180.02562 * 10 9 6 12 12 Si 1.86302 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.86298 * 109.47011 * 59.99739 * 12 11 10 14 14 C 1.86301 * 109.47068 * 180.02562 * 12 11 10 15 15 C 1.86301 * 109.47015 * 299.99993 * 12 11 10 16 16 C 1.38706 * 119.89325 * 0.02562 * 4 3 2 17 17 C 1.50702 * 120.02963 * 179.97438 * 16 4 3 18 18 O 1.42899 * 109.46867 * 283.80003 * 17 16 4 19 19 Si 1.86301 * 109.47106 * 163.79957 * 17 16 4 20 20 H 1.48499 * 109.47097 * 59.99608 * 19 17 16 21 21 H 1.48500 * 109.47012 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46849 * 299.99833 * 19 17 16 23 23 C 1.38172 * 119.94034 * 359.69926 * 16 4 3 24 24 C 1.38241 * 120.05243 * 0.57328 * 23 16 4 25 25 C 1.50704 * 119.93793 * 179.72311 * 24 23 16 26 26 H 1.08999 * 109.46819 * 270.01882 * 1 2 3 27 27 H 1.09001 * 109.46740 * 30.01330 * 1 2 3 28 28 H 1.08997 * 109.46850 * 150.01468 * 1 2 3 29 29 H 1.07995 * 120.02647 * 0.03010 * 3 2 1 30 30 H 1.09002 * 109.47290 * 296.49349 * 9 6 5 31 31 H 1.08993 * 109.47389 * 56.50077 * 9 6 5 32 32 H 1.09006 * 109.47292 * 299.99792 * 10 9 6 33 33 H 1.08995 * 109.47452 * 59.99957 * 10 9 6 34 34 H 1.08993 * 109.47013 * 299.99664 * 11 10 9 35 35 H 1.08999 * 109.46789 * 59.99988 * 11 10 9 36 36 H 1.09002 * 109.47263 * 60.00354 * 13 12 11 37 37 H 1.09004 * 109.47384 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.47487 * 299.99962 * 13 12 11 39 39 H 1.08995 * 109.47187 * 59.99787 * 14 12 11 40 40 H 1.09004 * 109.46867 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.46727 * 300.00195 * 14 12 11 42 42 H 1.08996 * 109.47231 * 60.00192 * 15 12 11 43 43 H 1.09004 * 109.47054 * 179.97438 * 15 12 11 44 44 H 1.08995 * 109.46987 * 300.00058 * 15 12 11 45 45 H 1.08999 * 109.46805 * 43.79987 * 17 16 4 46 46 H 0.96695 * 113.99983 * 299.99450 * 18 17 16 47 47 H 1.07995 * 119.96924 * 180.31504 * 23 16 4 48 48 H 1.09004 * 109.47066 * 269.72076 * 25 24 23 49 49 H 1.09000 * 109.46913 * 149.72579 * 25 24 23 50 50 H 1.08991 * 109.47342 * 29.72667 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 3.5846 1.1957 -0.0005 5 8 4.2659 2.3717 0.0000 6 16 4.4199 2.9986 -1.3784 7 8 5.3918 4.0184 -1.1929 8 8 4.6701 1.8958 -2.2388 9 6 2.7949 3.7242 -1.7296 10 6 2.8465 4.4678 -3.0658 11 6 1.4760 5.0803 -3.3618 12 14 1.5391 5.9865 -4.9884 13 6 1.9928 4.7943 -6.3462 14 6 -0.1294 6.7330 -5.3485 15 6 2.8171 7.3389 -4.8968 16 6 4.2752 -0.0072 -0.0016 17 6 5.7823 -0.0116 -0.0028 18 8 6.2585 0.3089 -1.3114 19 14 6.3987 -1.7004 0.4860 20 1 5.8999 -2.7090 -0.4830 21 1 7.8837 -1.7046 0.4855 22 1 5.9037 -2.0334 1.8460 23 6 3.5803 -1.2014 0.0041 24 6 2.1979 -1.1979 -0.0010 25 6 1.4425 -2.5020 -0.0010 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6571 2.1318 0.0005 30 1 2.0473 2.9326 -1.7830 31 1 2.5292 4.4219 -0.9356 32 1 3.5940 5.2593 -3.0125 33 1 3.1122 3.7701 -3.8599 34 1 0.7283 4.2892 -3.4150 35 1 1.2108 5.7782 -2.5676 36 1 1.2451 4.0030 -6.3999 37 1 2.0293 5.3243 -7.2980 38 1 2.9691 4.3579 -6.1353 39 1 -0.3944 7.4306 -4.5540 40 1 -0.0926 7.2628 -6.3004 41 1 -0.8774 5.9420 -5.4019 42 1 3.7934 6.9025 -4.6859 43 1 2.8543 7.8687 -5.8486 44 1 2.5517 8.0363 -4.1024 45 1 6.1483 0.7287 0.7086 46 1 5.9708 -0.3093 -1.9970 47 1 4.1175 -2.1382 0.0085 48 1 1.2598 -2.8161 -1.0287 49 1 0.4905 -2.3704 0.5132 50 1 2.0306 -3.2626 0.5123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_5825246_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:53 Heat of formation + Delta-G solvation = -169.165306 kcal Electronic energy + Delta-G solvation = -29764.850494 eV Core-core repulsion = 25815.018078 eV Total energy + Delta-G solvation = -3949.832416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36889 -39.84524 -38.03537 -37.75159 -36.87385 -35.95907 -34.24470 -33.28958 -29.80718 -29.58182 -28.51749 -28.43946 -28.32107 -28.04953 -25.54555 -24.08796 -22.87883 -22.59128 -20.80739 -19.20228 -18.71651 -18.57133 -17.70682 -17.06637 -16.80873 -16.64133 -15.92815 -15.88420 -15.38686 -15.32872 -15.13967 -14.79493 -14.64590 -14.43754 -14.27480 -14.17416 -14.08172 -13.95085 -13.77446 -13.64940 -13.63301 -13.54466 -13.28737 -13.22622 -13.18184 -13.12231 -13.07121 -12.97641 -12.90061 -12.77246 -12.65421 -12.53213 -12.13622 -11.98224 -11.94178 -11.77444 -11.67028 -10.86634 -10.83081 -10.56446 -10.31502 -10.11635 -9.66844 -0.93518 -0.06186 -0.02268 1.09963 1.19657 1.38598 1.49773 1.70136 1.81642 1.82931 1.89024 2.21665 2.56157 2.77913 3.08260 3.31592 3.44165 3.47449 3.55336 3.62142 3.65954 3.83382 3.90381 4.01782 4.02112 4.22224 4.30163 4.34963 4.46209 4.48694 4.50568 4.52367 4.60672 4.63981 4.67830 4.69234 4.72662 4.73225 4.73706 4.75472 4.77581 4.85791 4.89763 4.95602 4.98459 5.10910 5.22933 5.30500 5.43459 5.52033 5.54847 5.63860 6.75670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.061 4.061 3 C -0.139 4.139 4 C 0.097 3.903 5 O -0.663 6.663 6 S 2.589 3.411 7 O -0.926 6.926 8 O -0.925 6.925 9 C -0.658 4.658 10 C -0.100 4.100 11 C -0.405 4.405 12 Si 1.001 2.999 13 C -0.453 4.453 14 C -0.449 4.449 15 C -0.454 4.454 16 C -0.091 4.091 17 C -0.099 4.099 18 O -0.518 6.518 19 Si 0.954 3.046 20 H -0.248 1.248 21 H -0.247 1.247 22 H -0.248 1.248 23 C -0.109 4.109 24 C -0.063 4.063 25 C -0.123 4.123 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.121 0.879 46 H 0.381 0.619 47 H 0.139 0.861 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 -3.201 0.011 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.159 4.159 4 C 0.055 3.945 5 O -0.622 6.622 6 S 2.684 3.316 7 O -0.924 6.924 8 O -0.923 6.923 9 C -0.784 4.784 10 C -0.138 4.138 11 C -0.491 4.491 12 Si 1.198 2.802 13 C -0.560 4.560 14 C -0.556 4.556 15 C -0.561 4.561 16 C -0.094 4.094 17 C -0.209 4.209 18 O -0.323 6.323 19 Si 0.776 3.224 20 H -0.172 1.172 21 H -0.171 1.171 22 H -0.171 1.171 23 C -0.126 4.126 24 C -0.064 4.064 25 C -0.180 4.180 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.138 0.862 46 H 0.229 0.771 47 H 0.156 0.844 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.328 -3.600 0.700 6.468 hybrid contribution -1.086 0.603 -0.258 1.268 sum -6.414 -2.997 0.442 7.093 Atomic orbital electron populations 1.20921 0.89768 1.03787 1.03282 1.19638 0.96688 0.91287 0.98495 1.21306 0.91634 0.99937 1.02976 1.17641 0.89157 0.81158 1.06509 1.85711 1.76170 1.41261 1.59034 1.05781 0.77076 0.75335 0.73427 1.93641 1.55532 1.59990 1.83223 1.93648 1.83336 1.49119 1.66194 1.31097 1.25552 1.13252 1.08503 1.20947 0.99995 0.99921 0.92956 1.26166 0.97946 1.07606 1.17402 0.79336 0.67367 0.67127 0.66359 1.26168 1.05548 1.11120 1.13177 1.26101 1.17376 1.07033 1.05127 1.26178 1.12219 1.13098 1.04629 1.20405 0.97496 0.91766 0.99732 1.25148 0.90563 1.14378 0.90856 1.86591 1.74341 1.56177 1.15209 0.85656 0.81428 0.74344 0.80995 1.17183 1.17083 1.17100 1.21000 0.94092 0.97128 1.00427 1.19935 0.93264 0.95607 0.97594 1.20944 1.00434 0.93315 1.03282 0.90196 0.90929 0.90340 0.84043 0.84794 0.84624 0.89949 0.90022 0.90144 0.90089 0.91199 0.91107 0.91074 0.91259 0.91140 0.91288 0.91052 0.91109 0.91157 0.86165 0.77076 0.84363 0.90131 0.90487 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.42 9.19 36.01 0.33 0.75 16 2 C -0.06 0.06 5.88 -104.65 -0.62 -0.55 16 3 C -0.14 0.03 8.18 -39.43 -0.32 -0.30 16 4 C 0.10 0.21 4.63 -39.22 -0.18 0.03 16 5 O -0.66 -2.11 9.36 -51.76 -0.48 -2.59 16 6 S 2.59 8.17 5.17 -107.50 -0.56 7.62 16 7 O -0.93 -6.34 18.09 -67.04 -1.21 -7.55 16 8 O -0.92 -3.95 13.77 -70.56 -0.97 -4.93 16 9 C -0.66 0.54 5.19 37.16 0.19 0.73 16 10 C -0.10 0.08 4.59 -26.73 -0.12 -0.04 16 11 C -0.41 0.90 4.45 37.16 0.17 1.07 16 12 Si 1.00 -2.70 12.19 -169.99 -2.07 -4.78 16 13 C -0.45 0.65 8.65 101.05 0.87 1.53 16 14 C -0.45 0.78 8.65 101.05 0.87 1.65 16 15 C -0.45 0.52 8.65 101.05 0.87 1.40 16 16 C -0.09 -0.17 4.94 -104.47 -0.52 -0.68 16 17 C -0.10 -0.18 2.39 36.01 0.09 -0.10 16 18 O -0.52 -1.65 10.08 -58.10 -0.59 -2.23 16 19 Si 0.95 0.03 25.53 -169.99 -4.34 -4.31 16 20 H -0.25 0.21 6.70 56.52 0.38 0.59 16 21 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 22 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 23 C -0.11 -0.01 8.31 -39.60 -0.33 -0.33 16 24 C -0.06 0.05 5.88 -104.60 -0.62 -0.56 16 25 C -0.12 0.39 9.19 36.01 0.33 0.72 16 26 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 27 H 0.07 -0.30 8.08 -51.93 -0.42 -0.72 16 28 H 0.08 -0.33 6.69 -51.93 -0.35 -0.68 16 29 H 0.14 -0.39 6.72 -52.49 -0.35 -0.75 16 30 H 0.13 -0.37 6.27 -51.92 -0.33 -0.69 16 31 H 0.14 -0.34 8.14 -51.93 -0.42 -0.77 16 32 H 0.08 -0.09 7.79 -51.93 -0.40 -0.49 16 33 H 0.08 -0.13 7.79 -51.93 -0.40 -0.54 16 34 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 35 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 43 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 44 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 45 H 0.12 0.22 7.79 -51.93 -0.40 -0.18 16 46 H 0.38 0.09 8.67 45.56 0.39 0.49 16 47 H 0.14 -0.23 4.90 -52.49 -0.26 -0.49 16 48 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 49 H 0.08 -0.31 6.69 -51.93 -0.35 -0.66 16 50 H 0.07 -0.27 8.08 -51.93 -0.42 -0.69 16 LS Contribution 405.07 15.07 6.10 6.10 Total: 0.00 -8.84 405.07 -11.00 -19.84 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -7.91 Total: -12.47 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 1.03 Total: 5.31 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -3.25 Total: -17.31 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: -6.41 Total: -9.09 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -0.56 Total: 7.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -8.84 -11.00 -19.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_5825246_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.330 kcal (2) G-P(sol) polarization free energy of solvation -8.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds