Wall clock time and date at job start Tue Mar 9 2021 13:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38122 * 119.97385 * 2 1 4 4 C 1.38754 * 119.94155 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.05037 * 180.02562 * 4 3 2 6 6 S 1.52201 * 114.00216 * 277.43805 * 5 4 3 7 7 O 1.42094 * 104.27765 * 192.70614 * 6 5 4 8 8 O 1.42097 * 104.27581 * 320.56995 * 6 5 4 9 9 C 1.81402 * 104.44495 * 76.63786 * 6 5 4 10 10 C 1.53002 * 109.46798 * 176.49825 * 9 6 5 11 11 C 1.53007 * 109.46890 * 180.02562 * 10 9 6 12 12 Si 1.86302 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.86298 * 109.47011 * 59.99739 * 12 11 10 14 14 C 1.86301 * 109.47068 * 180.02562 * 12 11 10 15 15 C 1.86301 * 109.47015 * 299.99993 * 12 11 10 16 16 C 1.38706 * 119.89325 * 0.02562 * 4 3 2 17 17 C 1.50702 * 120.02963 * 179.97438 * 16 4 3 18 18 O 1.42899 * 109.46867 * 283.80003 * 17 16 4 19 19 Si 1.86301 * 109.47106 * 163.79957 * 17 16 4 20 20 H 1.48499 * 109.47097 * 59.99608 * 19 17 16 21 21 H 1.48500 * 109.47012 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46849 * 299.99833 * 19 17 16 23 23 C 1.38172 * 119.94034 * 359.69926 * 16 4 3 24 24 C 1.38241 * 120.05243 * 0.57328 * 23 16 4 25 25 C 1.50704 * 119.93793 * 179.72311 * 24 23 16 26 26 H 1.08999 * 109.46819 * 270.01882 * 1 2 3 27 27 H 1.09001 * 109.46740 * 30.01330 * 1 2 3 28 28 H 1.08997 * 109.46850 * 150.01468 * 1 2 3 29 29 H 1.07995 * 120.02647 * 0.03010 * 3 2 1 30 30 H 1.09002 * 109.47290 * 296.49349 * 9 6 5 31 31 H 1.08993 * 109.47389 * 56.50077 * 9 6 5 32 32 H 1.09006 * 109.47292 * 299.99792 * 10 9 6 33 33 H 1.08995 * 109.47452 * 59.99957 * 10 9 6 34 34 H 1.08993 * 109.47013 * 299.99664 * 11 10 9 35 35 H 1.08999 * 109.46789 * 59.99988 * 11 10 9 36 36 H 1.09002 * 109.47263 * 60.00354 * 13 12 11 37 37 H 1.09004 * 109.47384 * 179.97438 * 13 12 11 38 38 H 1.08996 * 109.47487 * 299.99962 * 13 12 11 39 39 H 1.08995 * 109.47187 * 59.99787 * 14 12 11 40 40 H 1.09004 * 109.46867 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.46727 * 300.00195 * 14 12 11 42 42 H 1.08996 * 109.47231 * 60.00192 * 15 12 11 43 43 H 1.09004 * 109.47054 * 179.97438 * 15 12 11 44 44 H 1.08995 * 109.46987 * 300.00058 * 15 12 11 45 45 H 1.08999 * 109.46805 * 43.79987 * 17 16 4 46 46 H 0.96695 * 113.99983 * 299.99450 * 18 17 16 47 47 H 1.07995 * 119.96924 * 180.31504 * 23 16 4 48 48 H 1.09004 * 109.47066 * 269.72076 * 25 24 23 49 49 H 1.09000 * 109.46913 * 149.72579 * 25 24 23 50 50 H 1.08991 * 109.47342 * 29.72667 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 3.5846 1.1957 -0.0005 5 8 4.2659 2.3717 0.0000 6 16 4.4199 2.9986 -1.3784 7 8 5.3918 4.0184 -1.1929 8 8 4.6701 1.8958 -2.2388 9 6 2.7949 3.7242 -1.7296 10 6 2.8465 4.4678 -3.0658 11 6 1.4760 5.0803 -3.3618 12 14 1.5391 5.9865 -4.9884 13 6 1.9928 4.7943 -6.3462 14 6 -0.1294 6.7330 -5.3485 15 6 2.8171 7.3389 -4.8968 16 6 4.2752 -0.0072 -0.0016 17 6 5.7823 -0.0116 -0.0028 18 8 6.2585 0.3089 -1.3114 19 14 6.3987 -1.7004 0.4860 20 1 5.8999 -2.7090 -0.4830 21 1 7.8837 -1.7046 0.4855 22 1 5.9037 -2.0334 1.8460 23 6 3.5803 -1.2014 0.0041 24 6 2.1979 -1.1979 -0.0010 25 6 1.4425 -2.5020 -0.0010 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8899 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6571 2.1318 0.0005 30 1 2.0473 2.9326 -1.7830 31 1 2.5292 4.4219 -0.9356 32 1 3.5940 5.2593 -3.0125 33 1 3.1122 3.7701 -3.8599 34 1 0.7283 4.2892 -3.4150 35 1 1.2108 5.7782 -2.5676 36 1 1.2451 4.0030 -6.3999 37 1 2.0293 5.3243 -7.2980 38 1 2.9691 4.3579 -6.1353 39 1 -0.3944 7.4306 -4.5540 40 1 -0.0926 7.2628 -6.3004 41 1 -0.8774 5.9420 -5.4019 42 1 3.7934 6.9025 -4.6859 43 1 2.8543 7.8687 -5.8486 44 1 2.5517 8.0363 -4.1024 45 1 6.1483 0.7287 0.7086 46 1 5.9708 -0.3093 -1.9970 47 1 4.1175 -2.1382 0.0085 48 1 1.2598 -2.8161 -1.0287 49 1 0.4905 -2.3704 0.5132 50 1 2.0306 -3.2626 0.5123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_5825246_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:52 Heat of formation + Delta-G solvation = -164.500216 kcal Electronic energy + Delta-G solvation = -29764.648200 eV Core-core repulsion = 25815.018078 eV Total energy + Delta-G solvation = -3949.630122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40470 -39.83338 -38.30570 -37.88184 -37.13023 -35.87217 -34.18638 -33.16459 -29.67577 -29.44615 -28.37154 -28.31351 -28.21142 -27.91991 -25.51115 -23.98920 -22.86812 -22.53388 -20.85016 -19.33396 -18.79099 -18.71923 -17.80969 -17.08727 -16.77329 -16.65447 -16.00000 -15.88331 -15.39612 -15.23420 -15.04192 -14.69837 -14.61440 -14.42677 -14.14074 -14.02443 -13.96449 -13.92646 -13.61048 -13.57511 -13.50447 -13.43973 -13.27352 -13.15229 -13.13046 -13.07893 -13.02179 -12.98344 -12.96142 -12.65461 -12.55281 -12.44393 -12.17026 -11.91134 -11.82543 -11.76455 -11.68694 -10.71355 -10.68968 -10.44054 -10.39563 -10.04921 -9.60009 -1.05266 -0.02331 0.00495 1.05069 1.08669 1.37930 1.47159 1.85012 1.90940 2.00213 2.02226 2.28019 2.61284 2.74260 2.97738 3.33715 3.51656 3.54566 3.64728 3.68267 3.73566 3.89766 4.03286 4.09633 4.16428 4.37575 4.42140 4.50986 4.57108 4.61914 4.74051 4.76419 4.80735 4.80900 4.82916 4.83630 4.85359 4.85846 4.87439 4.87926 4.88440 5.03245 5.08350 5.13446 5.22112 5.27527 5.44224 5.44825 5.59425 5.65835 5.67087 5.75592 6.71930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.141 4.141 4 C 0.066 3.934 5 O -0.673 6.673 6 S 2.578 3.422 7 O -0.979 6.979 8 O -0.947 6.947 9 C -0.634 4.634 10 C -0.118 4.118 11 C -0.409 4.409 12 Si 1.068 2.932 13 C -0.472 4.472 14 C -0.460 4.460 15 C -0.477 4.477 16 C -0.111 4.111 17 C -0.117 4.117 18 O -0.539 6.539 19 Si 0.995 3.005 20 H -0.228 1.228 21 H -0.273 1.273 22 H -0.247 1.247 23 C -0.117 4.117 24 C -0.065 4.065 25 C -0.125 4.125 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.389 0.611 47 H 0.152 0.848 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -4.271 0.181 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.161 4.161 4 C 0.025 3.975 5 O -0.633 6.633 6 S 2.678 3.322 7 O -0.978 6.978 8 O -0.945 6.945 9 C -0.764 4.764 10 C -0.157 4.157 11 C -0.495 4.495 12 Si 1.260 2.740 13 C -0.578 4.578 14 C -0.567 4.567 15 C -0.582 4.582 16 C -0.114 4.114 17 C -0.226 4.226 18 O -0.347 6.347 19 Si 0.815 3.185 20 H -0.151 1.151 21 H -0.198 1.198 22 H -0.170 1.170 23 C -0.135 4.135 24 C -0.066 4.066 25 C -0.181 4.181 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.184 0.816 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.123 0.877 46 H 0.239 0.761 47 H 0.169 0.831 48 H 0.108 0.892 49 H 0.108 0.892 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.293 -4.674 0.857 9.558 hybrid contribution -0.216 0.960 -0.328 1.038 sum -8.509 -3.714 0.529 9.300 Atomic orbital electron populations 1.21020 0.87714 1.04982 1.04113 1.20009 0.98113 0.90811 0.97333 1.21626 0.90670 1.01532 1.02259 1.18053 0.90291 0.80798 1.08381 1.85670 1.76916 1.41961 1.58704 1.05884 0.78492 0.74676 0.73105 1.93566 1.59020 1.61148 1.84033 1.93603 1.84608 1.49717 1.66574 1.30916 1.21948 1.14183 1.09374 1.21185 1.01167 1.00294 0.93036 1.26231 0.97164 1.08296 1.17810 0.78320 0.65418 0.65080 0.65203 1.26401 1.05527 1.11906 1.13928 1.26239 1.18201 1.07308 1.04993 1.26474 1.13004 1.14301 1.04440 1.20530 0.97308 0.92647 1.00888 1.25446 0.91426 1.15701 0.89978 1.86550 1.74782 1.57159 1.16172 0.85095 0.79267 0.72995 0.81161 1.15122 1.19780 1.17046 1.21201 0.94838 0.96935 1.00503 1.20304 0.93045 0.96928 0.96340 1.21037 1.00783 0.92135 1.04124 0.89397 0.89721 0.89265 0.81633 0.82162 0.82371 0.90243 0.89494 0.88522 0.89030 0.90761 0.91506 0.91548 0.91107 0.91595 0.90845 0.91711 0.91481 0.91120 0.87691 0.76110 0.83072 0.89199 0.89207 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.17 9.19 71.24 0.65 1.83 16 2 C -0.06 0.23 5.88 -19.88 -0.12 0.11 16 3 C -0.14 0.18 8.18 22.37 0.18 0.36 16 4 C 0.07 0.35 4.63 22.51 0.10 0.45 16 5 O -0.67 -5.65 9.36 -61.56 -0.58 -6.22 16 6 S 2.58 21.09 5.17 -56.49 -0.29 20.80 16 7 O -0.98 -16.57 18.09 -118.57 -2.15 -18.72 16 8 O -0.95 -10.21 13.77 -115.20 -1.59 -11.80 16 9 C -0.63 1.56 5.19 71.98 0.37 1.94 16 10 C -0.12 0.26 4.59 30.60 0.14 0.40 16 11 C -0.41 2.61 4.45 71.98 0.32 2.93 16 12 Si 1.07 -6.50 12.19 68.60 0.84 -5.66 16 13 C -0.47 1.39 8.65 113.37 0.98 2.37 16 14 C -0.46 2.07 8.65 113.37 0.98 3.05 16 15 C -0.48 0.82 8.65 113.37 0.98 1.80 16 16 C -0.11 -0.55 4.94 -19.77 -0.10 -0.64 16 17 C -0.12 -0.71 2.39 71.24 0.17 -0.54 16 18 O -0.54 -4.98 10.08 -127.12 -1.28 -6.26 16 19 Si 0.99 0.95 25.53 68.60 1.75 2.70 16 20 H -0.23 0.57 6.70 99.48 0.67 1.24 16 21 H -0.27 -1.29 7.11 99.48 0.71 -0.58 16 22 H -0.25 -0.13 7.11 99.48 0.71 0.57 16 23 C -0.12 -0.01 8.31 22.25 0.18 0.18 16 24 C -0.07 0.19 5.88 -19.85 -0.12 0.07 16 25 C -0.12 1.04 9.19 71.24 0.65 1.69 16 26 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.08 -0.98 8.08 -2.39 -0.02 -1.00 16 28 H 0.09 -1.02 6.69 -2.39 -0.02 -1.04 16 29 H 0.17 -1.25 6.72 -2.91 -0.02 -1.27 16 30 H 0.16 -1.24 6.27 -2.39 -0.01 -1.25 16 31 H 0.16 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.08 -0.13 7.79 -2.38 -0.02 -0.14 16 33 H 0.09 -0.29 7.79 -2.39 -0.02 -0.31 16 34 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 35 H 0.09 -0.72 7.96 -2.39 -0.02 -0.74 16 36 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 38 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 39 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 41 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 42 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 43 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 44 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 45 H 0.11 0.79 7.79 -2.39 -0.02 0.78 16 46 H 0.39 1.19 8.67 -74.06 -0.64 0.55 16 47 H 0.15 -0.57 4.90 -2.91 -0.01 -0.59 16 48 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.09 -0.96 6.69 -2.39 -0.02 -0.97 16 50 H 0.08 -0.72 8.08 -2.39 -0.02 -0.74 16 Total: 0.00 -23.52 405.07 3.10 -20.42 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: 1.00 Total: -11.24 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 5.40 Total: 15.99 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -5.59 Total: -43.00 kcal Atomic # 14 Polarization: -5.55 SS G_CDS: 2.59 Total: -2.96 kcal Atomic # 16 Polarization: 21.09 SS G_CDS: -0.29 Total: 20.80 kcal Total: -23.52 3.10 -20.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_5825246_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.084 kcal (2) G-P(sol) polarization free energy of solvation -23.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds