Wall clock time and date at job start Tue Mar 9 2021 13:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38121 * 119.97224 * 2 1 4 4 C 1.38754 * 119.94517 * 179.97438 * 3 2 1 5 5 O 1.35899 * 120.05676 * 180.02562 * 4 3 2 6 6 S 1.52200 * 114.00258 * 275.71610 * 5 4 3 7 7 O 1.42102 * 106.40125 * 188.84788 * 6 5 4 8 8 O 1.42098 * 106.40156 * 321.77011 * 6 5 4 9 9 C 1.76209 * 107.21669 * 75.31037 * 6 5 4 10 10 C 1.38238 * 119.99467 * 262.80529 * 9 6 5 11 11 C 1.38233 * 119.99426 * 179.97438 * 10 9 6 12 12 C 1.38239 * 120.00243 * 359.97438 * 11 10 9 13 Xx 1.81003 * 119.99959 * 179.97438 * 12 11 10 14 13 F 8.12868 * 60.31524 * 329.62799 * 2 1 3 15 14 F 1.60998 * 89.99796 * 134.99859 * 13 12 11 16 15 F 1.60999 * 89.99920 * 314.99650 * 13 12 11 17 16 F 1.61002 * 89.99557 * 224.99778 * 13 12 11 18 17 F 1.60997 * 90.00159 * 44.99729 * 13 12 11 19 18 C 1.38229 * 119.99774 * 359.95063 * 12 11 10 20 19 C 1.38232 * 120.00485 * 359.86067 * 19 12 11 21 20 C 1.38708 * 119.88759 * 0.02562 * 4 3 2 22 21 C 1.50703 * 120.02979 * 180.02562 * 21 4 3 23 22 O 1.42903 * 109.46889 * 75.46324 * 22 21 4 24 23 Si 1.86300 * 109.47290 * 195.46506 * 22 21 4 25 24 H 1.48496 * 109.46963 * 299.99963 * 24 22 21 26 25 H 1.48497 * 109.47149 * 60.00090 * 24 22 21 27 26 H 1.48493 * 109.47031 * 179.97438 * 24 22 21 28 27 C 1.38173 * 119.94410 * 359.97438 * 21 4 3 29 28 C 1.38246 * 120.05346 * 359.74202 * 28 21 4 30 29 C 1.50698 * 119.94134 * 180.02562 * 29 28 21 31 30 H 1.09006 * 109.46833 * 270.27063 * 1 2 3 32 31 H 1.08997 * 109.47476 * 30.26756 * 1 2 3 33 32 H 1.08992 * 109.47176 * 150.27261 * 1 2 3 34 33 H 1.07996 * 120.02725 * 359.96757 * 3 2 1 35 34 H 1.07996 * 120.00404 * 359.97438 * 10 9 6 36 35 H 1.07999 * 120.00139 * 179.97438 * 11 10 9 37 36 H 1.08008 * 119.99830 * 180.02562 * 19 12 11 38 37 H 1.07998 * 120.00538 * 179.97438 * 20 19 12 39 38 H 1.09001 * 109.47083 * 315.46621 * 22 21 4 40 39 H 0.96696 * 113.99384 * 185.07860 * 23 22 21 41 40 H 1.07999 * 119.97041 * 179.97438 * 28 21 4 42 41 H 1.09003 * 109.47395 * 90.00166 * 30 29 28 43 42 H 1.08999 * 109.47042 * 210.00274 * 30 29 28 44 43 H 1.09007 * 109.47089 * 330.00030 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5846 1.1958 0.0005 5 8 4.2658 2.3718 0.0011 6 16 4.4568 2.9772 -1.3822 7 8 5.3516 4.0695 -1.2220 8 8 4.7058 1.8915 -2.2645 9 6 2.9101 3.6680 -1.8673 10 6 2.0571 2.9482 -2.6829 11 6 0.8435 3.4899 -3.0630 12 6 0.4826 4.7512 -2.6272 13 9 -2.5185 6.0927 -3.5706 14 9 -1.3650 5.9442 -1.6119 15 9 -0.8473 4.9773 -4.6393 16 9 -0.3796 6.8607 -3.4484 17 9 -1.8327 4.0608 -2.8027 18 6 1.3350 5.4703 -1.8105 19 6 2.5469 4.9271 -1.4271 20 6 4.2752 -0.0071 0.0005 21 6 5.7822 -0.0115 0.0017 22 8 6.2585 0.3247 1.3064 23 14 6.3986 -1.7060 -0.4669 24 1 5.8999 -2.7029 0.5142 25 1 5.9037 -2.0553 -1.8227 26 1 7.8836 -1.7102 -0.4664 27 6 3.5802 -1.2013 0.0005 28 6 2.1978 -1.1979 0.0059 29 6 1.4424 -2.5019 0.0065 30 1 -0.3633 0.0049 1.0277 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3633 -0.8923 -0.5096 33 1 1.6570 2.1318 -0.0005 34 1 2.3388 1.9626 -3.0230 35 1 0.1771 2.9278 -3.7005 36 1 1.0529 6.4556 -1.4696 37 1 3.2131 5.4891 -0.7893 38 1 6.1483 0.7203 -0.7184 39 1 7.2194 0.4169 1.3625 40 1 4.1175 -2.1382 0.0001 41 1 1.2642 -2.8182 1.0343 42 1 0.4882 -2.3693 -0.5034 43 1 2.0284 -3.2615 -0.5110 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_5825246_8643202.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:36:50 Heat of formation + Delta-G solvation = 298.568298 kcal Electronic energy + Delta-G solvation = -39995.826424 eV Core-core repulsion = 33884.642902 eV Total energy + Delta-G solvation = -6111.183522 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 416.072 amu Computer time = 35.24 seconds Orbital eigenvalues (eV) -44.46787 -44.31443 -44.27428 -44.17148 -43.65559 -42.57464 -41.34607 -39.94878 -38.80340 -37.90943 -37.45776 -34.38083 -33.41839 -33.24425 -32.93987 -29.57926 -27.99288 -25.56304 -24.88684 -24.82999 -23.83803 -22.85639 -21.17354 -20.21884 -19.32942 -18.83168 -18.46975 -18.03405 -17.55930 -16.73648 -16.71533 -16.59353 -16.24894 -15.85222 -15.63111 -15.56649 -15.31124 -15.25039 -15.20421 -15.01527 -14.83265 -14.68770 -14.57447 -14.47644 -14.38683 -14.27654 -14.23038 -14.20476 -14.11360 -13.98523 -13.78858 -13.69149 -13.64800 -13.60746 -13.57373 -13.41167 -13.27579 -13.21402 -12.85802 -12.76599 -12.62230 -12.39215 -12.35962 -12.13055 -12.04203 -11.88050 -11.76976 -11.58794 -11.47401 -11.13486 -10.41572 -10.07969 -9.67558 -5.34168 -4.87435 -3.49958 -1.61680 -1.27457 -0.80974 -0.10402 -0.02433 0.87768 1.06047 1.34102 1.42890 1.51439 1.86631 2.11005 2.20506 2.35112 2.54942 2.64272 3.09280 3.18533 3.22891 3.49878 3.59562 3.64581 3.72104 3.81473 3.83366 3.92159 3.94350 4.01373 4.14483 4.21343 4.30471 4.47387 4.55277 4.56708 4.70859 4.73847 4.75305 4.92169 4.96241 5.10870 5.18425 5.29057 5.47660 5.71841 6.69988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.126 4.126 4 C 0.058 3.942 5 O -0.641 6.641 6 S 2.685 3.315 7 O -0.934 6.934 8 O -0.943 6.943 9 C -0.698 4.698 10 C 0.057 3.943 11 C -0.121 4.121 12 C 0.389 3.611 13 F -0.203 7.203 14 F -0.158 7.158 15 F -0.163 7.163 16 F -0.166 7.166 17 F -0.151 7.151 18 C -0.125 4.125 19 C 0.061 3.939 20 C -0.066 4.066 21 C -0.108 4.108 22 O -0.554 6.554 23 Si 0.971 3.029 24 H -0.245 1.245 25 H -0.244 1.244 26 H -0.251 1.251 27 C -0.115 4.115 28 C -0.054 4.054 29 C -0.130 4.130 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.223 0.777 35 H 0.208 0.792 36 H 0.204 0.796 37 H 0.222 0.778 38 H 0.074 0.926 39 H 0.400 0.600 40 H 0.148 0.852 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -9.076 3.661 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.060 4.060 3 C -0.146 4.146 4 C 0.017 3.983 5 O -0.601 6.601 6 S 2.775 3.225 7 O -0.932 6.932 8 O -0.942 6.942 9 C -0.780 4.780 10 C 0.039 3.961 11 C -0.139 4.139 12 C 0.384 3.616 13 F -0.203 7.203 14 F -0.156 7.156 15 F -0.161 7.161 16 F -0.164 7.164 17 F -0.150 7.150 18 C -0.143 4.143 19 C 0.044 3.956 20 C -0.069 4.069 21 C -0.217 4.217 22 O -0.364 6.364 23 Si 0.791 3.209 24 H -0.169 1.169 25 H -0.167 1.167 26 H -0.175 1.175 27 C -0.133 4.133 28 C -0.055 4.055 29 C -0.186 4.186 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.182 0.818 34 H 0.240 0.760 35 H 0.224 0.776 36 H 0.221 0.779 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.251 0.749 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.140 -9.942 3.702 12.258 hybrid contribution -1.274 2.000 -0.523 2.428 sum 4.866 -7.942 3.179 9.842 Atomic orbital electron populations 1.21073 0.88072 1.05052 1.04104 1.19919 0.97800 0.90814 0.97486 1.21498 0.90464 1.01263 1.01409 1.17940 0.90136 0.80007 1.10213 1.85743 1.76095 1.42327 1.55911 1.02643 0.73404 0.73915 0.72516 1.93683 1.60237 1.54758 1.84514 1.93662 1.83174 1.51925 1.65405 1.31918 1.25910 1.07387 1.12791 1.21684 0.84796 1.00554 0.89025 1.22190 0.97647 0.91070 1.02976 1.28021 0.48192 0.88203 0.97234 2.00000 1.96264 1.46092 1.77934 1.99921 1.92029 1.71056 1.52615 1.99920 1.98056 1.52790 1.65376 1.99920 1.78693 1.47916 1.89873 1.99920 1.96580 1.22866 1.95602 1.22199 0.89813 1.05405 0.96907 1.21613 0.89617 0.91287 0.93121 1.19557 0.94852 0.92565 0.99888 1.25045 0.93600 1.13630 0.89381 1.86482 1.29244 1.93548 1.27088 0.85361 0.80471 0.74276 0.80752 1.16883 1.16731 1.17504 1.21175 0.94821 0.97079 1.00233 1.20261 0.92816 0.96952 0.95457 1.21115 1.01066 0.92346 1.04095 0.89740 0.89911 0.88911 0.81811 0.76041 0.77570 0.77942 0.76122 0.90804 0.74914 0.83458 0.89484 0.88740 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 809. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 1.54 9.60 71.24 0.68 2.23 16 2 C -0.06 0.50 5.88 -19.88 -0.12 0.39 16 3 C -0.13 0.98 8.14 22.37 0.18 1.16 16 4 C 0.06 -0.16 4.69 22.51 0.11 -0.05 16 5 O -0.64 1.84 9.50 -61.69 -0.59 1.25 16 6 S 2.69 -11.99 5.17 -56.49 -0.29 -12.29 16 7 O -0.93 -0.91 17.48 -118.78 -2.08 -2.98 16 8 O -0.94 2.20 14.51 -118.78 -1.72 0.47 16 9 C -0.70 7.69 4.73 22.27 0.11 7.79 16 10 C 0.06 -0.77 8.55 22.27 0.19 -0.58 16 11 C -0.12 1.26 8.62 22.27 0.19 1.45 16 12 C 0.39 -1.53 4.82 22.27 0.11 -1.42 16 13 F -0.20 -4.57 16.66 44.97 0.75 -3.82 16 14 F -0.16 -1.76 15.31 44.97 0.69 -1.07 16 15 F -0.16 -1.94 15.31 44.97 0.69 -1.25 16 16 F -0.17 -2.08 15.31 44.97 0.69 -1.39 16 17 F -0.15 -1.51 15.31 44.97 0.69 -0.82 16 18 C -0.13 1.18 8.62 22.27 0.19 1.38 16 19 C 0.06 -0.80 9.53 22.27 0.21 -0.59 16 20 C -0.07 0.05 4.88 -19.77 -0.10 -0.04 16 21 C -0.11 0.13 2.32 71.24 0.17 0.29 16 22 O -0.55 0.49 12.79 -148.98 -1.91 -1.41 16 23 Si 0.97 -3.31 25.59 68.60 1.76 -1.55 16 24 H -0.25 0.82 6.72 99.48 0.67 1.48 16 25 H -0.24 0.70 7.11 99.48 0.71 1.41 16 26 H -0.25 0.80 7.11 99.48 0.71 1.51 16 27 C -0.12 0.42 8.31 22.26 0.18 0.60 16 28 C -0.05 0.37 5.88 -19.85 -0.12 0.25 16 29 C -0.13 1.42 9.61 71.24 0.68 2.10 16 30 H 0.08 -1.00 8.14 -2.38 -0.02 -1.02 16 31 H 0.08 -1.14 8.09 -2.39 -0.02 -1.16 16 32 H 0.09 -1.30 5.93 -2.39 -0.01 -1.32 16 33 H 0.16 -2.22 7.35 -2.91 -0.02 -2.25 16 34 H 0.22 -4.12 7.48 -2.91 -0.02 -4.14 16 35 H 0.21 -2.63 7.40 -2.91 -0.02 -2.65 16 36 H 0.20 -2.23 7.40 -2.91 -0.02 -2.25 16 37 H 0.22 -4.08 7.80 -2.91 -0.02 -4.10 16 38 H 0.07 -0.17 6.36 -2.39 -0.02 -0.18 16 39 H 0.40 -3.83 8.86 -74.06 -0.66 -4.49 16 40 H 0.15 -0.87 4.90 -2.91 -0.01 -0.89 16 41 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.09 -1.28 5.92 -2.39 -0.01 -1.30 16 43 H 0.08 -0.94 8.08 -2.38 -0.02 -0.96 16 Total: 0.00 -35.74 389.91 2.53 -33.21 By element: Atomic # 1 Polarization: -24.48 SS G_CDS: 1.18 Total: -23.30 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 2.68 Total: 14.95 kcal Atomic # 8 Polarization: 3.62 SS G_CDS: -6.29 Total: -2.67 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 3.50 Total: -8.36 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 1.76 Total: -1.55 kcal Atomic # 16 Polarization: -11.99 SS G_CDS: -0.29 Total: -12.29 kcal Total: -35.74 2.53 -33.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_5825246_8643202.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 331.780 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 296.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 298.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.24 seconds