Wall clock time and date at job start Tue Mar 9 2021 13:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00339 * 2 1 4 4 O 1.20832 * 119.99459 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00193 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.90931 * 48.74992 * 5 3 2 7 7 C 1.53777 * 113.61159 * 179.97438 * 5 3 2 8 8 C 1.53785 * 87.08080 * 139.98067 * 7 5 3 9 9 H 1.08996 * 113.61395 * 89.19757 * 8 7 5 10 10 S 1.81405 * 113.61412 * 220.01807 * 8 7 5 11 11 O 1.42098 * 110.53915 * 66.84516 * 10 8 7 12 12 O 1.42097 * 110.54335 * 290.09168 * 10 8 7 13 13 O 1.52200 * 104.44620 * 178.46728 * 10 8 7 14 14 C 1.36012 * 113.99588 * 75.00103 * 13 10 8 15 15 C 1.38842 * 120.06924 * 90.00373 * 14 13 10 16 16 F 1.35104 * 120.03234 * 359.97438 * 15 14 13 17 17 C 1.38366 * 119.93084 * 179.72312 * 15 14 13 18 18 C 1.38253 * 120.07071 * 0.24627 * 17 15 14 19 19 C 1.50698 * 119.93044 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47148 * 65.00364 * 19 18 17 21 21 Si 1.86304 * 109.47164 * 184.99924 * 19 18 17 22 22 C 1.38253 * 120.13590 * 0.02562 * 18 17 15 23 23 C 1.38363 * 120.07196 * 0.02562 * 22 18 17 24 24 F 1.35110 * 120.03650 * 179.97438 * 23 22 18 25 25 C 1.53781 * 87.17089 * 334.60805 * 8 7 5 26 26 H 1.08999 * 109.47164 * 300.00048 * 1 2 3 27 27 H 1.09004 * 109.47065 * 60.00334 * 1 2 3 28 28 H 1.08993 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 113.62057 * 25.43473 * 7 5 3 30 30 H 1.08996 * 113.69289 * 254.53825 * 7 5 3 31 31 H 1.07999 * 119.96507 * 180.22713 * 17 15 14 32 32 H 1.08994 * 109.47424 * 305.00219 * 19 18 17 33 33 H 0.96697 * 114.00206 * 59.99446 * 20 19 18 34 34 H 1.48499 * 109.99581 * 58.68165 * 21 19 18 35 35 H 1.48493 * 110.00237 * 180.02562 * 21 19 18 36 36 H 1.08007 * 119.96167 * 180.02562 * 22 18 17 37 37 H 1.09003 * 113.61376 * 139.93681 * 25 8 7 38 38 H 1.09005 * 113.61659 * 270.84260 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1077 2.7141 -0.0011 8 6 5.1814 2.2270 0.9862 9 1 6.0816 1.8495 0.5011 10 16 5.5398 3.4114 2.3127 11 8 4.4158 3.5548 3.1701 12 8 6.2171 4.5487 1.7961 13 8 6.5823 2.7129 3.1740 14 6 7.8261 2.6863 2.6244 15 6 8.7208 3.7174 2.8779 16 9 8.3567 4.7490 3.6706 17 6 9.9874 3.6846 2.3220 18 6 10.3609 2.6292 1.5108 19 6 11.7410 2.5970 0.9065 20 8 12.7136 2.4767 1.9465 21 14 11.8806 1.1396 -0.2457 22 6 9.4703 1.6038 1.2520 23 6 8.2019 1.6313 1.8040 24 9 7.3320 0.6291 1.5502 25 6 4.1937 1.1223 1.3970 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.4175 3.4405 0.4279 30 1 4.5106 3.0302 -0.9633 31 1 10.6851 4.4845 2.5217 32 1 11.9157 3.5179 0.3503 33 1 12.6186 1.6783 2.4835 34 1 10.8534 1.2365 -1.3137 35 1 13.2373 1.0962 -0.8477 36 1 9.7652 0.7804 0.6182 37 1 4.6657 0.1536 1.5614 38 1 3.5269 1.4126 2.2090 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_6672276_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:41 Heat of formation + Delta-G solvation = -229.461832 kcal Electronic energy + Delta-G solvation = -32112.786164 eV Core-core repulsion = 27074.434057 eV Total energy + Delta-G solvation = -5038.352107 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.76621 -50.38770 -42.21274 -41.90444 -40.31412 -39.65068 -38.41958 -37.68472 -37.35342 -37.30926 -32.59038 -32.09628 -29.96375 -27.85266 -27.61962 -27.26631 -24.93548 -24.03996 -23.45377 -22.12232 -20.97092 -20.03934 -19.71176 -19.61726 -19.07475 -18.89566 -18.21034 -17.98016 -17.54419 -17.48836 -17.31978 -17.10327 -16.88383 -16.84214 -16.56941 -16.41258 -15.99493 -15.90135 -15.36889 -14.77046 -14.61316 -14.51290 -14.44758 -14.17907 -14.04426 -13.91440 -13.81688 -13.55445 -13.35494 -13.32706 -13.23693 -13.10770 -13.08219 -12.78571 -12.58358 -12.22747 -12.08679 -11.82970 -11.72233 -11.33226 -10.90003 -10.49470 -10.38031 -5.32737 -1.42550 -0.70554 -0.66619 0.63702 0.90036 1.06722 1.34381 1.55328 1.61142 1.71679 1.98690 2.30561 2.45294 2.64535 2.71759 2.79930 2.88404 3.00279 3.04847 3.19215 3.38107 3.43599 3.52352 3.78120 3.90476 3.96442 3.99123 4.09679 4.14199 4.20038 4.21987 4.25421 4.30402 4.39594 4.40294 4.48884 4.57495 4.58107 4.75931 5.08205 5.31521 6.21809 6.64806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.499 6.499 5 C -0.094 4.094 6 H 0.139 0.861 7 C -0.086 4.086 8 C -0.653 4.653 9 H 0.162 0.838 10 S 2.586 3.414 11 O -0.906 6.906 12 O -0.939 6.939 13 O -0.645 6.645 14 C -0.001 4.001 15 C 0.168 3.832 16 F -0.103 7.103 17 C -0.120 4.120 18 C -0.045 4.045 19 C -0.073 4.073 20 O -0.530 6.530 21 Si 0.688 3.312 22 C -0.146 4.146 23 C 0.129 3.871 24 F -0.108 7.108 25 C -0.089 4.089 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.129 0.871 33 H 0.384 0.616 34 H -0.250 1.250 35 H -0.245 1.245 36 H 0.164 0.836 37 H 0.108 0.892 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -7.136 -3.010 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.310 3.690 4 O -0.385 6.385 5 C -0.114 4.114 6 H 0.156 0.844 7 C -0.124 4.124 8 C -0.760 4.760 9 H 0.180 0.820 10 S 2.681 3.319 11 O -0.904 6.904 12 O -0.937 6.937 13 O -0.603 6.603 14 C -0.045 4.045 15 C 0.146 3.854 16 F -0.080 7.080 17 C -0.139 4.139 18 C -0.046 4.046 19 C -0.183 4.183 20 O -0.336 6.336 21 Si 0.588 3.412 22 C -0.165 4.165 23 C 0.108 3.892 24 F -0.087 7.087 25 C -0.127 4.127 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.184 0.816 32 H 0.147 0.853 33 H 0.232 0.768 34 H -0.174 1.174 35 H -0.170 1.170 36 H 0.181 0.819 37 H 0.127 0.873 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.577 -6.034 -3.451 8.323 hybrid contribution -0.917 0.213 -0.124 0.949 sum 3.660 -5.821 -3.575 7.750 Atomic orbital electron populations 1.23361 0.75664 1.04141 1.02900 1.86503 1.23934 1.32968 1.83735 1.23438 0.91461 0.81679 0.72467 1.90714 1.66825 1.36391 1.44610 1.22434 0.87920 0.99958 1.01119 0.84361 1.22629 0.93878 0.96068 0.99836 1.32361 1.08675 1.16306 1.18633 0.81999 1.05957 0.74757 0.75447 0.75719 1.93687 1.50179 1.84480 1.62055 1.93672 1.71243 1.47656 1.81132 1.85822 1.26673 1.85203 1.62574 1.17957 0.84191 0.98422 1.03935 1.17458 0.92578 0.83954 0.91418 1.91648 1.91660 1.54854 1.69884 1.21183 0.94011 1.00900 0.97794 1.20332 0.96918 0.92316 0.95036 1.25234 0.84218 1.12028 0.96844 1.86583 1.51465 1.48500 1.47047 0.94819 0.81919 0.83869 0.80562 1.21032 0.91235 1.01168 1.03024 1.17293 0.89209 0.85301 0.97435 1.91592 1.67553 1.57460 1.92057 1.22675 0.95185 0.98550 0.96304 0.91553 0.91633 0.87710 0.87209 0.87550 0.81613 0.85342 0.76826 1.17431 1.16953 0.81917 0.87317 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.39 10.57 -39.26 -0.41 -0.81 16 3 C 0.47 0.84 7.49 36.00 0.27 1.11 16 4 O -0.50 -2.42 15.65 -18.75 -0.29 -2.72 16 5 C -0.09 0.12 4.26 -90.87 -0.39 -0.27 16 6 H 0.14 -0.55 8.14 -51.93 -0.42 -0.98 16 7 C -0.09 0.07 7.00 -25.92 -0.18 -0.11 16 8 C -0.65 0.69 3.31 -25.92 -0.09 0.61 16 9 H 0.16 -0.57 5.47 -51.93 -0.28 -0.86 16 10 S 2.59 7.43 5.12 -107.50 -0.55 6.88 16 11 O -0.91 -5.44 17.31 -67.04 -1.16 -6.60 16 12 O -0.94 -4.41 15.95 -67.04 -1.07 -5.48 16 13 O -0.64 -1.56 9.78 -52.10 -0.51 -2.07 16 14 C 0.00 0.00 4.81 -39.14 -0.19 -0.19 16 15 C 0.17 0.18 6.48 -39.31 -0.25 -0.08 16 16 F -0.10 -0.34 16.73 2.25 0.04 -0.30 16 17 C -0.12 0.22 9.66 -39.53 -0.38 -0.16 16 18 C -0.04 0.16 5.35 -104.61 -0.56 -0.40 16 19 C -0.07 0.31 2.80 36.00 0.10 0.41 16 20 O -0.53 1.89 12.83 -35.23 -0.45 1.44 16 21 Si 0.69 -3.25 29.80 -169.99 -5.07 -8.31 16 22 C -0.15 0.59 8.64 -39.53 -0.34 0.25 16 23 C 0.13 -0.25 6.40 -39.32 -0.25 -0.50 16 24 F -0.11 0.29 14.42 2.25 0.03 0.32 16 25 C -0.09 0.13 7.20 -25.83 -0.19 -0.06 16 26 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 28 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 29 H 0.11 0.06 7.39 -51.93 -0.38 -0.33 16 30 H 0.11 -0.31 8.14 -51.93 -0.42 -0.74 16 31 H 0.17 -0.52 8.06 -52.49 -0.42 -0.95 16 32 H 0.13 -0.54 7.96 -51.93 -0.41 -0.96 16 33 H 0.38 -2.89 8.70 45.56 0.40 -2.50 16 34 H -0.25 0.67 7.11 56.52 0.40 1.08 16 35 H -0.25 0.26 7.11 56.52 0.40 0.66 16 36 H 0.16 -1.10 4.90 -52.48 -0.26 -1.36 16 37 H 0.11 -0.39 8.14 -51.93 -0.42 -0.81 16 38 H 0.11 -0.04 7.41 -51.93 -0.38 -0.43 16 LS Contribution 345.04 15.07 5.20 5.20 Total: 0.00 -11.52 345.04 -9.11 -20.63 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: -3.48 Total: -9.82 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.38 Total: 1.64 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -3.90 Total: -16.23 kcal Atomic # 9 Polarization: -0.05 SS G_CDS: 0.07 Total: 0.02 kcal Atomic # 14 Polarization: -3.25 SS G_CDS: -5.07 Total: -8.31 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -0.55 Total: 6.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -11.52 -9.11 -20.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.834 kcal (2) G-P(sol) polarization free energy of solvation -11.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds