Wall clock time and date at job start Tue Mar 9 2021 13:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00339 * 2 1 4 4 O 1.20832 * 119.99459 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00193 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.90931 * 48.74992 * 5 3 2 7 7 C 1.53777 * 113.61159 * 179.97438 * 5 3 2 8 8 C 1.53785 * 87.08080 * 139.98067 * 7 5 3 9 9 H 1.08996 * 113.61395 * 89.19757 * 8 7 5 10 10 S 1.81405 * 113.61412 * 220.01807 * 8 7 5 11 11 O 1.42098 * 110.53915 * 66.84516 * 10 8 7 12 12 O 1.42097 * 110.54335 * 290.09168 * 10 8 7 13 13 O 1.52200 * 104.44620 * 178.46728 * 10 8 7 14 14 C 1.36012 * 113.99588 * 75.00103 * 13 10 8 15 15 C 1.38842 * 120.06924 * 90.00373 * 14 13 10 16 16 F 1.35104 * 120.03234 * 359.97438 * 15 14 13 17 17 C 1.38366 * 119.93084 * 179.72312 * 15 14 13 18 18 C 1.38253 * 120.07071 * 0.24627 * 17 15 14 19 19 C 1.50698 * 119.93044 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47148 * 65.00364 * 19 18 17 21 21 Si 1.86304 * 109.47164 * 184.99924 * 19 18 17 22 22 C 1.38253 * 120.13590 * 0.02562 * 18 17 15 23 23 C 1.38363 * 120.07196 * 0.02562 * 22 18 17 24 24 F 1.35110 * 120.03650 * 179.97438 * 23 22 18 25 25 C 1.53781 * 87.17089 * 334.60805 * 8 7 5 26 26 H 1.08999 * 109.47164 * 300.00048 * 1 2 3 27 27 H 1.09004 * 109.47065 * 60.00334 * 1 2 3 28 28 H 1.08993 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 113.62057 * 25.43473 * 7 5 3 30 30 H 1.08996 * 113.69289 * 254.53825 * 7 5 3 31 31 H 1.07999 * 119.96507 * 180.22713 * 17 15 14 32 32 H 1.08994 * 109.47424 * 305.00219 * 19 18 17 33 33 H 0.96697 * 114.00206 * 59.99446 * 20 19 18 34 34 H 1.48499 * 109.99581 * 58.68165 * 21 19 18 35 35 H 1.48493 * 110.00237 * 180.02562 * 21 19 18 36 36 H 1.08007 * 119.96167 * 180.02562 * 22 18 17 37 37 H 1.09003 * 113.61376 * 139.93681 * 25 8 7 38 38 H 1.09005 * 113.61659 * 270.84260 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0244 0.6361 -0.7558 7 6 4.1077 2.7141 -0.0011 8 6 5.1814 2.2270 0.9862 9 1 6.0816 1.8495 0.5011 10 16 5.5398 3.4114 2.3127 11 8 4.4158 3.5548 3.1701 12 8 6.2171 4.5487 1.7961 13 8 6.5823 2.7129 3.1740 14 6 7.8261 2.6863 2.6244 15 6 8.7208 3.7174 2.8779 16 9 8.3567 4.7490 3.6706 17 6 9.9874 3.6846 2.3220 18 6 10.3609 2.6292 1.5108 19 6 11.7410 2.5970 0.9065 20 8 12.7136 2.4767 1.9465 21 14 11.8806 1.1396 -0.2457 22 6 9.4703 1.6038 1.2520 23 6 8.2019 1.6313 1.8040 24 9 7.3320 0.6291 1.5502 25 6 4.1937 1.1223 1.3970 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.4175 3.4405 0.4279 30 1 4.5106 3.0302 -0.9633 31 1 10.6851 4.4845 2.5217 32 1 11.9157 3.5179 0.3503 33 1 12.6186 1.6783 2.4835 34 1 10.8534 1.2365 -1.3137 35 1 13.2373 1.0962 -0.8477 36 1 9.7652 0.7804 0.6182 37 1 4.6657 0.1536 1.5614 38 1 3.5269 1.4126 2.2090 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_6672276_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:40 Heat of formation + Delta-G solvation = -232.996171 kcal Electronic energy + Delta-G solvation = -32112.939424 eV Core-core repulsion = 27074.434057 eV Total energy + Delta-G solvation = -5038.505367 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.56655 -50.46748 -42.22792 -41.96606 -40.16969 -39.64070 -38.67114 -37.59575 -37.49457 -37.39471 -32.44155 -31.93267 -29.95973 -27.81415 -27.43622 -27.15605 -24.80368 -23.97761 -23.45185 -22.12730 -20.93100 -20.11154 -19.72168 -19.50676 -19.05063 -18.94692 -18.29741 -17.81592 -17.58348 -17.40919 -17.20178 -17.08873 -16.87756 -16.79998 -16.49752 -16.14718 -16.01793 -15.72251 -15.40670 -14.80245 -14.55157 -14.46430 -14.29761 -14.26073 -14.00348 -13.86529 -13.71812 -13.68648 -13.58608 -13.44027 -13.18067 -13.04101 -12.99884 -12.78977 -12.28621 -12.02049 -11.96093 -11.89258 -11.71433 -11.42757 -10.60935 -10.34994 -10.24055 -4.94750 -1.48694 -0.64532 -0.51623 0.56042 0.97432 1.24916 1.63025 1.66452 1.74920 2.05294 2.11200 2.21612 2.40016 2.67936 2.84391 2.87820 3.03644 3.13270 3.17144 3.47191 3.51170 3.60538 3.72148 3.81455 4.10092 4.13772 4.15892 4.24421 4.26544 4.27459 4.34075 4.37264 4.51705 4.55687 4.56599 4.66221 4.68363 4.78551 4.87461 5.22172 5.26894 6.56420 6.77358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.539 6.539 5 C -0.085 4.085 6 H 0.179 0.821 7 C -0.099 4.099 8 C -0.623 4.623 9 H 0.196 0.804 10 S 2.574 3.426 11 O -0.955 6.955 12 O -0.969 6.969 13 O -0.653 6.653 14 C -0.027 4.027 15 C 0.134 3.866 16 F -0.128 7.128 17 C -0.116 4.116 18 C -0.033 4.033 19 C -0.078 4.078 20 O -0.547 6.547 21 Si 0.777 3.223 22 C -0.126 4.126 23 C 0.135 3.865 24 F -0.100 7.100 25 C -0.094 4.094 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.129 0.871 33 H 0.401 0.599 34 H -0.266 1.266 35 H -0.299 1.299 36 H 0.199 0.801 37 H 0.140 0.860 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -9.819 -4.820 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.429 6.429 5 C -0.105 4.105 6 H 0.196 0.804 7 C -0.137 4.137 8 C -0.734 4.734 9 H 0.213 0.787 10 S 2.674 3.326 11 O -0.953 6.953 12 O -0.967 6.967 13 O -0.612 6.612 14 C -0.072 4.072 15 C 0.113 3.887 16 F -0.106 7.106 17 C -0.135 4.135 18 C -0.034 4.034 19 C -0.187 4.187 20 O -0.356 6.356 21 Si 0.680 3.320 22 C -0.144 4.144 23 C 0.113 3.887 24 F -0.078 7.078 25 C -0.132 4.132 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.192 0.808 32 H 0.147 0.853 33 H 0.252 0.748 34 H -0.192 1.192 35 H -0.227 1.227 36 H 0.215 0.785 37 H 0.159 0.841 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.003 -8.700 -5.193 11.776 hybrid contribution -1.263 0.985 0.378 1.646 sum 4.739 -7.715 -4.814 10.254 Atomic orbital electron populations 1.23563 0.74978 1.05801 1.02441 1.86505 1.24751 1.32582 1.83332 1.24102 0.92699 0.81241 0.71169 1.90701 1.67956 1.37654 1.46569 1.22626 0.85830 1.00008 1.02037 0.80369 1.22795 0.93647 0.96382 1.00887 1.32198 1.10064 1.14732 1.16399 0.78677 1.06112 0.73967 0.76203 0.76286 1.93617 1.51839 1.85700 1.64191 1.93620 1.71526 1.50028 1.81514 1.85782 1.27468 1.84877 1.63033 1.18385 0.83526 0.99767 1.05477 1.17878 0.94024 0.84091 0.92736 1.91574 1.92053 1.56068 1.70886 1.21343 0.92971 1.01714 0.97464 1.20480 0.97346 0.91644 0.93955 1.25428 0.83436 1.12874 0.96937 1.86559 1.51555 1.50001 1.47462 0.93874 0.77875 0.81791 0.78421 1.21378 0.89774 1.01401 1.01828 1.17294 0.89911 0.84610 0.96841 1.91605 1.67478 1.56845 1.91857 1.22821 0.94836 0.99665 0.95897 0.92341 0.91867 0.84994 0.89457 0.84843 0.80847 0.85348 0.74806 1.19226 1.22673 0.78468 0.84142 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.59 10.57 -51.44 -0.54 -1.13 16 3 C 0.46 1.67 7.49 71.24 0.53 2.20 16 4 O -0.54 -6.05 15.65 21.95 0.34 -5.71 16 5 C -0.09 0.35 4.26 -10.96 -0.05 0.31 16 6 H 0.18 -2.15 8.14 -2.39 -0.02 -2.17 16 7 C -0.10 0.20 7.00 31.12 0.22 0.42 16 8 C -0.62 1.77 3.31 31.12 0.10 1.87 16 9 H 0.20 -1.92 5.47 -2.39 -0.01 -1.94 16 10 S 2.57 20.25 5.12 -56.49 -0.29 19.96 16 11 O -0.96 -14.97 17.31 -118.57 -2.05 -17.03 16 12 O -0.97 -11.65 15.95 -118.57 -1.89 -13.55 16 13 O -0.65 -4.34 9.78 -62.78 -0.61 -4.96 16 14 C -0.03 -0.07 4.81 22.56 0.11 0.04 16 15 C 0.13 0.48 6.48 22.44 0.15 0.63 16 16 F -0.13 -1.25 16.73 44.97 0.75 -0.50 16 17 C -0.12 0.41 9.66 22.30 0.22 0.63 16 18 C -0.03 0.28 5.35 -19.86 -0.11 0.18 16 19 C -0.08 0.80 2.80 71.24 0.20 1.00 16 20 O -0.55 4.73 12.83 -148.98 -1.91 2.82 16 21 Si 0.78 -9.10 29.80 68.60 2.04 -7.05 16 22 C -0.13 1.36 8.64 22.30 0.19 1.55 16 23 C 0.14 -0.75 6.40 22.44 0.14 -0.61 16 24 F -0.10 0.82 14.42 44.97 0.65 1.47 16 25 C -0.09 0.36 7.20 31.18 0.22 0.58 16 26 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 27 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 28 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.09 0.27 7.39 -2.39 -0.02 0.25 16 30 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.17 -1.02 8.06 -2.91 -0.02 -1.04 16 32 H 0.13 -1.28 7.96 -2.39 -0.02 -1.30 16 33 H 0.40 -6.84 8.70 -74.06 -0.64 -7.48 16 34 H -0.27 2.28 7.11 99.48 0.71 2.99 16 35 H -0.30 0.73 7.11 99.48 0.71 1.44 16 36 H 0.20 -3.56 4.90 -2.91 -0.01 -3.57 16 37 H 0.14 -1.42 8.14 -2.39 -0.02 -1.44 16 38 H 0.09 0.04 7.41 -2.38 -0.02 0.02 16 Total: 0.00 -32.20 345.04 0.16 -32.04 By element: Atomic # 1 Polarization: -16.88 SS G_CDS: 0.55 Total: -16.33 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 3.13 Total: 9.97 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -6.67 Total: -39.55 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 1.40 Total: 0.97 kcal Atomic # 14 Polarization: -9.10 SS G_CDS: 2.04 Total: -7.05 kcal Atomic # 16 Polarization: 20.25 SS G_CDS: -0.29 Total: 19.96 kcal Total: -32.20 0.16 -32.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.959 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds