Wall clock time and date at job start Tue Mar 9 2021 13:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47452 * 2 1 4 4 C 1.34226 * 117.00287 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00136 * 180.02562 * 4 3 2 7 7 H 1.08999 * 112.84972 * 48.79944 * 6 4 3 8 8 C 1.53777 * 113.61701 * 179.97438 * 6 4 3 9 9 C 1.53776 * 87.08377 * 140.06253 * 8 6 4 10 10 F 1.39899 * 113.61443 * 89.19942 * 9 8 6 11 11 C 1.53002 * 113.61721 * 220.02279 * 9 8 6 12 12 S 1.81399 * 109.47160 * 179.97438 * 11 9 8 13 13 O 1.42104 * 110.54196 * 68.37352 * 12 11 9 14 14 O 1.42092 * 110.54170 * 291.62056 * 12 11 9 15 15 O 1.52204 * 104.44660 * 179.97438 * 12 11 9 16 16 C 1.36014 * 113.99704 * 75.00410 * 15 12 11 17 17 C 1.38828 * 120.07282 * 89.99932 * 16 15 12 18 18 F 1.35109 * 120.03287 * 359.97438 * 17 16 15 19 19 C 1.38371 * 119.93551 * 180.02562 * 17 16 15 20 20 C 1.38257 * 120.06250 * 359.97438 * 19 17 16 21 21 C 1.50706 * 119.92477 * 179.97438 * 20 19 17 22 22 O 1.42903 * 109.47186 * 65.00469 * 21 20 19 23 23 Si 1.86302 * 109.46768 * 185.00149 * 21 20 19 24 24 C 1.38244 * 120.14240 * 0.25916 * 20 19 17 25 25 C 1.38373 * 120.06873 * 359.48949 * 24 20 19 26 26 F 1.35102 * 120.03715 * 180.25076 * 25 24 20 27 27 C 1.53781 * 113.68841 * 277.53467 * 6 4 3 28 28 H 1.08998 * 109.47443 * 60.00134 * 1 2 3 29 29 H 1.09000 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47303 * 300.00421 * 1 2 3 31 31 H 1.08998 * 109.47303 * 239.99578 * 2 1 3 32 32 H 1.09000 * 109.46926 * 119.99836 * 2 1 3 33 33 H 1.09007 * 113.61408 * 25.51522 * 8 6 4 34 34 H 1.08999 * 113.61851 * 254.61837 * 8 6 4 35 35 H 1.08993 * 109.47112 * 59.99468 * 11 9 8 36 36 H 1.09004 * 109.46430 * 300.00128 * 11 9 8 37 37 H 1.07995 * 119.96885 * 179.97438 * 19 17 16 38 38 H 1.08992 * 109.47155 * 305.00066 * 21 20 19 39 39 H 0.96698 * 113.99763 * 59.99746 * 22 21 20 40 40 H 1.48503 * 109.99841 * 58.68268 * 23 21 20 41 41 H 1.48504 * 109.99775 * 180.02562 * 23 21 20 42 42 H 1.08000 * 119.96823 * 179.74148 * 24 20 19 43 43 H 1.09003 * 113.61610 * 105.45932 * 27 6 4 44 44 H 1.09003 * 113.61540 * 334.55424 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4715 3.5809 0.7564 8 6 5.4582 2.9680 -0.0001 9 6 5.3564 4.1442 -0.9855 10 9 5.2851 5.3940 -0.3609 11 6 6.3985 4.0980 -2.1048 12 16 6.1769 5.5296 -3.1967 13 8 6.5220 6.7307 -2.5202 14 8 4.9594 5.4205 -3.9210 15 8 7.2593 5.3711 -4.2549 16 6 6.9944 4.4071 -5.1771 17 6 6.3036 4.7263 -6.3383 18 9 5.8930 5.9953 -6.5537 19 6 6.0352 3.7432 -7.2744 20 6 6.4546 2.4443 -7.0543 21 6 6.1600 1.3759 -8.0756 22 8 6.8595 1.6689 -9.2868 23 14 6.7155 -0.2779 -7.4221 24 6 7.1384 2.1223 -5.8968 25 6 7.4145 3.1019 -4.9594 26 9 8.0872 2.7875 -3.8307 27 6 3.9856 3.5797 -1.3957 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9128 2.0757 -0.4307 34 1 5.8896 3.2412 0.9629 35 1 6.2738 3.1804 -2.6796 36 1 7.3984 4.1222 -1.6715 37 1 5.4975 3.9908 -8.1776 38 1 5.0884 1.3474 -8.2728 39 1 7.8203 1.7100 -9.1859 40 1 6.0187 -0.5798 -6.1459 41 1 6.4311 -1.3400 -8.4203 42 1 7.4611 1.1059 -5.7259 43 1 3.2285 4.3466 -1.5591 44 1 4.0374 2.8547 -2.2081 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_6672276_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:34 Heat of formation + Delta-G solvation = -281.019473 kcal Electronic energy + Delta-G solvation = -39344.325559 eV Core-core repulsion = 33523.208532 eV Total energy + Delta-G solvation = -5821.117028 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.082 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -50.78241 -50.42076 -49.25007 -42.26382 -41.86010 -40.35483 -39.45141 -38.46418 -37.71162 -37.51450 -37.33165 -32.94326 -32.63296 -32.22018 -32.03137 -27.63961 -27.47408 -27.04300 -24.94075 -24.15658 -23.95925 -22.59525 -21.96693 -20.99634 -20.07376 -19.76508 -19.49745 -19.25519 -18.94980 -18.30456 -17.96293 -17.79392 -17.69660 -17.40468 -17.32351 -17.31096 -16.87397 -16.85014 -16.53038 -16.44172 -16.22866 -16.04278 -15.92282 -15.53742 -15.25776 -14.76821 -14.72438 -14.60749 -14.45368 -14.44656 -14.12260 -13.89410 -13.85086 -13.82208 -13.40598 -13.38778 -13.26803 -13.19671 -13.13718 -13.04696 -13.01059 -12.65145 -12.61233 -12.56606 -12.23942 -11.99855 -11.62422 -11.60502 -11.45236 -10.92270 -10.54152 -10.41757 -5.33784 -1.51517 -0.76537 -0.71227 0.59186 0.88329 0.99728 1.33200 1.47746 1.51407 1.70427 1.95164 2.21762 2.43809 2.53416 2.63179 2.65510 2.71523 2.80440 2.96014 3.02089 3.08840 3.16747 3.30028 3.41590 3.55868 3.70913 3.86039 3.87850 3.90269 3.91402 3.95293 4.06749 4.14224 4.17042 4.20582 4.22414 4.27662 4.37769 4.45449 4.53878 4.54255 4.63586 4.73061 4.85472 4.94987 5.04083 5.34486 6.19958 6.60466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.475 3.525 5 O -0.502 6.502 6 C -0.109 4.109 7 H 0.139 0.861 8 C -0.120 4.120 9 C 0.103 3.897 10 F -0.169 7.169 11 C -0.670 4.670 12 S 2.584 3.416 13 O -0.895 6.895 14 O -0.933 6.933 15 O -0.645 6.645 16 C -0.005 4.005 17 C 0.170 3.830 18 F -0.101 7.101 19 C -0.120 4.120 20 C -0.043 4.043 21 C -0.072 4.072 22 O -0.530 6.530 23 Si 0.686 3.314 24 C -0.147 4.147 25 C 0.128 3.872 26 F -0.110 7.110 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.130 0.870 39 H 0.384 0.616 40 H -0.250 1.250 41 H -0.244 1.244 42 H 0.164 0.836 43 H 0.111 0.889 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -6.677 -2.155 7.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.128 4.128 7 H 0.157 0.843 8 C -0.158 4.158 9 C 0.083 3.917 10 F -0.149 7.149 11 C -0.795 4.795 12 S 2.677 3.323 13 O -0.893 6.893 14 O -0.931 6.931 15 O -0.603 6.603 16 C -0.050 4.050 17 C 0.148 3.852 18 F -0.079 7.079 19 C -0.139 4.139 20 C -0.045 4.045 21 C -0.183 4.183 22 O -0.335 6.335 23 Si 0.586 3.414 24 C -0.165 4.165 25 C 0.107 3.893 26 F -0.088 7.088 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.185 0.815 38 H 0.147 0.853 39 H 0.232 0.768 40 H -0.174 1.174 41 H -0.168 1.168 42 H 0.181 0.819 43 H 0.130 0.870 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.049 -6.989 -2.353 7.374 hybrid contribution -0.061 0.262 0.819 0.862 sum -0.110 -6.726 -1.534 6.900 Atomic orbital electron populations 1.21829 0.92181 1.03337 1.03799 1.23124 0.95749 0.79610 1.02810 1.86523 1.24011 1.32962 1.83486 1.23209 0.80895 0.91807 0.72308 1.90689 1.60542 1.42704 1.45036 1.22480 0.97232 0.92106 1.01004 0.84314 1.23585 0.93729 0.97644 1.00862 1.21188 0.95296 0.82336 0.92877 1.93021 1.97000 1.41510 1.83415 1.31414 1.10059 1.24160 1.13838 1.06049 0.73945 0.76879 0.75452 1.93708 1.81861 1.39927 1.73828 1.93679 1.45309 1.86846 1.67309 1.85860 1.67886 1.58358 1.48158 1.17988 1.09065 0.85530 0.92395 1.17439 0.94209 0.81157 0.92353 1.91654 1.87146 1.35064 1.94063 1.21193 1.01719 0.90940 1.00015 1.20351 0.94204 0.95328 0.94592 1.25224 1.01545 1.04377 0.87121 1.86584 1.23917 1.94051 1.28996 0.94804 0.91120 0.75224 0.80230 1.21053 1.02144 0.99736 0.93565 1.17323 0.95689 0.90723 0.85603 1.91623 1.76943 1.93064 1.47185 1.23787 0.96060 1.01782 0.96525 0.91287 0.89928 0.91260 0.91057 0.90948 0.86001 0.87834 0.82964 0.81993 0.81531 0.85300 0.76799 1.17415 1.16848 0.81877 0.87045 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.31 10.29 37.16 0.38 0.69 16 2 C 0.06 -0.02 6.19 37.16 0.23 0.21 16 3 O -0.35 -0.39 10.22 -39.25 -0.40 -0.79 16 4 C 0.48 0.56 7.49 36.00 0.27 0.83 16 5 O -0.50 -1.74 15.65 -18.75 -0.29 -2.04 16 6 C -0.11 0.10 4.23 -90.96 -0.39 -0.28 16 7 H 0.14 -0.32 8.14 -51.93 -0.42 -0.75 16 8 C -0.12 0.16 6.86 -25.92 -0.18 -0.01 16 9 C 0.10 -0.02 1.62 -89.79 -0.15 -0.17 16 10 F -0.17 -0.37 16.28 2.25 0.04 -0.33 16 11 C -0.67 0.68 4.35 37.16 0.16 0.84 16 12 S 2.58 7.26 4.89 -107.50 -0.53 6.73 16 13 O -0.90 -5.73 17.54 -67.04 -1.18 -6.91 16 14 O -0.93 -3.56 15.95 -67.03 -1.07 -4.63 16 15 O -0.64 -1.54 9.78 -52.11 -0.51 -2.05 16 16 C -0.01 0.00 4.81 -39.14 -0.19 -0.19 16 17 C 0.17 0.12 6.48 -39.31 -0.25 -0.13 16 18 F -0.10 -0.29 16.73 2.25 0.04 -0.26 16 19 C -0.12 0.25 9.66 -39.53 -0.38 -0.13 16 20 C -0.04 0.16 5.35 -104.61 -0.56 -0.40 16 21 C -0.07 0.31 2.80 36.01 0.10 0.41 16 22 O -0.53 1.92 12.83 -35.23 -0.45 1.47 16 23 Si 0.69 -3.10 29.79 -169.99 -5.06 -8.16 16 24 C -0.15 0.57 8.64 -39.53 -0.34 0.23 16 25 C 0.13 -0.23 6.33 -39.31 -0.25 -0.47 16 26 F -0.11 0.24 14.68 2.25 0.03 0.27 16 27 C -0.14 0.16 7.08 -25.90 -0.18 -0.03 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 32 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 33 H 0.12 -0.21 7.40 -51.93 -0.38 -0.59 16 34 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 35 H 0.15 -0.52 5.90 -51.93 -0.31 -0.83 16 36 H 0.16 -0.50 8.14 -51.92 -0.42 -0.92 16 37 H 0.17 -0.58 8.06 -52.49 -0.42 -1.00 16 38 H 0.13 -0.56 7.96 -51.93 -0.41 -0.98 16 39 H 0.38 -2.90 8.70 45.56 0.40 -2.50 16 40 H -0.25 0.59 7.11 56.52 0.40 0.99 16 41 H -0.24 0.23 7.11 56.52 0.40 0.63 16 42 H 0.16 -1.05 4.90 -52.49 -0.26 -1.31 16 43 H 0.11 -0.17 8.14 -51.93 -0.42 -0.59 16 44 H 0.11 -0.28 7.92 -51.93 -0.41 -0.69 16 LS Contribution 394.83 15.07 5.95 5.95 Total: 0.00 -11.28 394.83 -9.96 -21.24 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -4.80 Total: -11.89 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.72 Total: 1.39 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -3.90 Total: -14.94 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.11 Total: -0.32 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: -5.06 Total: -8.16 kcal Atomic # 16 Polarization: 7.26 SS G_CDS: -0.53 Total: 6.73 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -11.28 -9.96 -21.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.782 kcal (2) G-P(sol) polarization free energy of solvation -11.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds