Wall clock time and date at job start Tue Mar 9 2021 13:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47452 * 2 1 4 4 C 1.34226 * 117.00287 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00136 * 180.02562 * 4 3 2 7 7 H 1.08999 * 112.84972 * 48.79944 * 6 4 3 8 8 C 1.53777 * 113.61701 * 179.97438 * 6 4 3 9 9 C 1.53776 * 87.08377 * 140.06253 * 8 6 4 10 10 F 1.39899 * 113.61443 * 89.19942 * 9 8 6 11 11 C 1.53002 * 113.61721 * 220.02279 * 9 8 6 12 12 S 1.81399 * 109.47160 * 179.97438 * 11 9 8 13 13 O 1.42104 * 110.54196 * 68.37352 * 12 11 9 14 14 O 1.42092 * 110.54170 * 291.62056 * 12 11 9 15 15 O 1.52204 * 104.44660 * 179.97438 * 12 11 9 16 16 C 1.36014 * 113.99704 * 75.00410 * 15 12 11 17 17 C 1.38828 * 120.07282 * 89.99932 * 16 15 12 18 18 F 1.35109 * 120.03287 * 359.97438 * 17 16 15 19 19 C 1.38371 * 119.93551 * 180.02562 * 17 16 15 20 20 C 1.38257 * 120.06250 * 359.97438 * 19 17 16 21 21 C 1.50706 * 119.92477 * 179.97438 * 20 19 17 22 22 O 1.42903 * 109.47186 * 65.00469 * 21 20 19 23 23 Si 1.86302 * 109.46768 * 185.00149 * 21 20 19 24 24 C 1.38244 * 120.14240 * 0.25916 * 20 19 17 25 25 C 1.38373 * 120.06873 * 359.48949 * 24 20 19 26 26 F 1.35102 * 120.03715 * 180.25076 * 25 24 20 27 27 C 1.53781 * 113.68841 * 277.53467 * 6 4 3 28 28 H 1.08998 * 109.47443 * 60.00134 * 1 2 3 29 29 H 1.09000 * 109.47511 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47303 * 300.00421 * 1 2 3 31 31 H 1.08998 * 109.47303 * 239.99578 * 2 1 3 32 32 H 1.09000 * 109.46926 * 119.99836 * 2 1 3 33 33 H 1.09007 * 113.61408 * 25.51522 * 8 6 4 34 34 H 1.08999 * 113.61851 * 254.61837 * 8 6 4 35 35 H 1.08993 * 109.47112 * 59.99468 * 11 9 8 36 36 H 1.09004 * 109.46430 * 300.00128 * 11 9 8 37 37 H 1.07995 * 119.96885 * 179.97438 * 19 17 16 38 38 H 1.08992 * 109.47155 * 305.00066 * 21 20 19 39 39 H 0.96698 * 113.99763 * 59.99746 * 22 21 20 40 40 H 1.48503 * 109.99841 * 58.68268 * 23 21 20 41 41 H 1.48504 * 109.99775 * 180.02562 * 23 21 20 42 42 H 1.08000 * 119.96823 * 179.74148 * 24 20 19 43 43 H 1.09003 * 113.61610 * 105.45932 * 27 6 4 44 44 H 1.09003 * 113.61540 * 334.55424 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4715 3.5809 0.7564 8 6 5.4582 2.9680 -0.0001 9 6 5.3564 4.1442 -0.9855 10 9 5.2851 5.3940 -0.3609 11 6 6.3985 4.0980 -2.1048 12 16 6.1769 5.5296 -3.1967 13 8 6.5220 6.7307 -2.5202 14 8 4.9594 5.4205 -3.9210 15 8 7.2593 5.3711 -4.2549 16 6 6.9944 4.4071 -5.1771 17 6 6.3036 4.7263 -6.3383 18 9 5.8930 5.9953 -6.5537 19 6 6.0352 3.7432 -7.2744 20 6 6.4546 2.4443 -7.0543 21 6 6.1600 1.3759 -8.0756 22 8 6.8595 1.6689 -9.2868 23 14 6.7155 -0.2779 -7.4221 24 6 7.1384 2.1223 -5.8968 25 6 7.4145 3.1019 -4.9594 26 9 8.0872 2.7875 -3.8307 27 6 3.9856 3.5797 -1.3957 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9128 2.0757 -0.4307 34 1 5.8896 3.2412 0.9629 35 1 6.2738 3.1804 -2.6796 36 1 7.3984 4.1222 -1.6715 37 1 5.4975 3.9908 -8.1776 38 1 5.0884 1.3474 -8.2728 39 1 7.8203 1.7100 -9.1859 40 1 6.0187 -0.5798 -6.1459 41 1 6.4311 -1.3400 -8.4203 42 1 7.4611 1.1059 -5.7259 43 1 3.2285 4.3466 -1.5591 44 1 4.0374 2.8547 -2.2081 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_6672276_16464788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:33 Heat of formation + Delta-G solvation = -282.181455 kcal Electronic energy + Delta-G solvation = -39344.375946 eV Core-core repulsion = 33523.208532 eV Total energy + Delta-G solvation = -5821.167415 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.082 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.61142 -50.47795 -49.30295 -42.27677 -41.89909 -40.21213 -39.41278 -38.69784 -37.60794 -37.58177 -37.41825 -32.87498 -32.48642 -32.13231 -31.90932 -27.45361 -27.35742 -27.01205 -24.80446 -24.08926 -23.84772 -22.58995 -21.97120 -20.94743 -20.12699 -19.72963 -19.45226 -19.24681 -18.96575 -18.33028 -17.83934 -17.78311 -17.69660 -17.30857 -17.28841 -17.18379 -16.89687 -16.79539 -16.47042 -16.25674 -16.17347 -16.08010 -15.74579 -15.51843 -15.31223 -14.74052 -14.70337 -14.50600 -14.40574 -14.27261 -14.22077 -13.73840 -13.72747 -13.71527 -13.65019 -13.59698 -13.20225 -13.13338 -13.06977 -12.99933 -12.98583 -12.57719 -12.51928 -12.31640 -12.06399 -11.95371 -11.60640 -11.57602 -11.49151 -10.64668 -10.39598 -10.27801 -4.98839 -1.57511 -0.70301 -0.55517 0.52504 0.94561 1.21104 1.51115 1.62176 1.70618 2.00954 2.06741 2.13113 2.42675 2.58335 2.64755 2.76550 2.82399 2.99567 3.10559 3.12439 3.15732 3.33325 3.55170 3.61592 3.68525 3.77892 3.94517 4.00300 4.03210 4.07141 4.10523 4.24382 4.28084 4.29607 4.34530 4.36930 4.48574 4.53226 4.56954 4.69670 4.75287 4.78550 4.86527 4.96405 5.09594 5.18254 5.36847 6.55854 6.74909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.478 3.522 5 O -0.527 6.527 6 C -0.109 4.109 7 H 0.150 0.850 8 C -0.112 4.112 9 C 0.091 3.909 10 F -0.186 7.186 11 C -0.652 4.652 12 S 2.576 3.424 13 O -0.947 6.947 14 O -0.954 6.954 15 O -0.654 6.654 16 C -0.030 4.030 17 C 0.141 3.859 18 F -0.124 7.124 19 C -0.113 4.113 20 C -0.031 4.031 21 C -0.073 4.073 22 O -0.545 6.545 23 Si 0.768 3.232 24 C -0.129 4.129 25 C 0.131 3.869 26 F -0.105 7.105 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.178 0.822 38 H 0.132 0.868 39 H 0.401 0.599 40 H -0.271 1.271 41 H -0.296 1.296 42 H 0.195 0.805 43 H 0.111 0.889 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -8.882 -2.241 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.321 3.679 5 O -0.416 6.416 6 C -0.127 4.127 7 H 0.168 0.832 8 C -0.151 4.151 9 C 0.071 3.929 10 F -0.167 7.167 11 C -0.780 4.780 12 S 2.674 3.326 13 O -0.945 6.945 14 O -0.952 6.952 15 O -0.612 6.612 16 C -0.074 4.074 17 C 0.119 3.881 18 F -0.102 7.102 19 C -0.132 4.132 20 C -0.033 4.033 21 C -0.183 4.183 22 O -0.354 6.354 23 Si 0.673 3.327 24 C -0.147 4.147 25 C 0.109 3.891 26 F -0.083 7.083 27 C -0.186 4.186 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.198 0.802 36 H 0.203 0.797 37 H 0.195 0.805 38 H 0.150 0.850 39 H 0.252 0.748 40 H -0.197 1.197 41 H -0.223 1.223 42 H 0.211 0.789 43 H 0.130 0.870 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.393 -9.126 -2.457 9.459 hybrid contribution -0.218 0.784 0.761 1.114 sum 0.175 -8.342 -1.696 8.514 Atomic orbital electron populations 1.21839 0.90946 1.04278 1.03688 1.23293 0.96781 0.79078 1.02804 1.86533 1.24101 1.33790 1.83268 1.23551 0.80709 0.92216 0.71377 1.90672 1.60969 1.43645 1.46363 1.22570 0.97622 0.91094 1.01458 0.83188 1.23609 0.93417 0.97056 1.00993 1.21427 0.96011 0.82028 0.93409 1.92990 1.97107 1.42786 1.83777 1.31320 1.11407 1.22515 1.12783 1.06023 0.73535 0.77449 0.75585 1.93640 1.82535 1.43505 1.74807 1.93638 1.46221 1.87383 1.67990 1.85818 1.67340 1.59431 1.48637 1.18382 1.10477 0.86243 0.92346 1.17813 0.95737 0.80969 0.93543 1.91589 1.87692 1.36628 1.94303 1.21359 1.01217 0.90929 0.99683 1.20478 0.93282 0.94755 0.94743 1.25346 1.01923 1.04166 0.86844 1.86562 1.25637 1.93989 1.29194 0.93904 0.89662 0.72256 0.76911 1.21371 1.00468 1.00507 0.92354 1.17352 0.95621 0.89958 0.86151 1.91632 1.76801 1.92881 1.47032 1.23910 0.95636 1.02054 0.96969 0.91317 0.88473 0.91401 0.90930 0.91124 0.85175 0.86860 0.80214 0.79653 0.80485 0.85036 0.74791 1.19688 1.22342 0.78866 0.87039 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.67 10.29 71.98 0.74 1.42 16 2 C 0.05 -0.04 6.19 71.98 0.45 0.40 16 3 O -0.36 -0.73 10.22 -51.37 -0.53 -1.25 16 4 C 0.48 0.92 7.49 71.23 0.53 1.45 16 5 O -0.53 -3.37 15.65 21.97 0.34 -3.03 16 6 C -0.11 0.27 4.23 -11.02 -0.05 0.22 16 7 H 0.15 -0.76 8.14 -2.39 -0.02 -0.78 16 8 C -0.11 0.44 6.86 31.12 0.21 0.65 16 9 C 0.09 -0.07 1.62 -10.25 -0.02 -0.09 16 10 F -0.19 -0.96 16.28 44.97 0.73 -0.22 16 11 C -0.65 1.66 4.35 71.98 0.31 1.97 16 12 S 2.58 18.56 4.89 -56.49 -0.28 18.29 16 13 O -0.95 -14.74 17.54 -118.57 -2.08 -16.82 16 14 O -0.95 -9.14 15.95 -118.57 -1.89 -11.03 16 15 O -0.65 -4.15 9.78 -62.80 -0.61 -4.76 16 16 C -0.03 -0.06 4.81 22.55 0.11 0.04 16 17 C 0.14 0.36 6.48 22.44 0.15 0.50 16 18 F -0.12 -1.03 16.73 44.97 0.75 -0.27 16 19 C -0.11 0.50 9.66 22.31 0.22 0.71 16 20 C -0.03 0.27 5.35 -19.86 -0.11 0.16 16 21 C -0.07 0.75 2.80 71.24 0.20 0.95 16 22 O -0.55 4.82 12.83 -148.98 -1.91 2.91 16 23 Si 0.77 -8.26 29.79 68.60 2.04 -6.21 16 24 C -0.13 1.28 8.64 22.30 0.19 1.47 16 25 C 0.13 -0.62 6.33 22.44 0.14 -0.47 16 26 F -0.11 0.64 14.68 44.97 0.66 1.30 16 27 C -0.15 0.37 7.08 31.13 0.22 0.59 16 28 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 -0.09 8.13 -2.39 -0.02 -0.11 16 32 H 0.07 -0.05 8.13 -2.39 -0.02 -0.06 16 33 H 0.13 -0.69 7.40 -2.38 -0.02 -0.70 16 34 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.18 -1.52 5.90 -2.39 -0.01 -1.54 16 36 H 0.19 -1.35 8.14 -2.39 -0.02 -1.37 16 37 H 0.18 -1.26 8.06 -2.91 -0.02 -1.28 16 38 H 0.13 -1.36 7.96 -2.39 -0.02 -1.38 16 39 H 0.40 -6.84 8.70 -74.06 -0.64 -7.49 16 40 H -0.27 1.87 7.11 99.48 0.71 2.58 16 41 H -0.30 0.54 7.11 99.48 0.71 1.25 16 42 H 0.19 -3.16 4.90 -2.91 -0.01 -3.17 16 43 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.13 -0.74 7.92 -2.39 -0.02 -0.76 16 Total: 0.00 -29.25 394.83 1.02 -28.23 By element: Atomic # 1 Polarization: -17.61 SS G_CDS: 0.49 Total: -17.13 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 3.30 Total: 9.99 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -6.68 Total: -33.98 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 2.14 Total: 0.81 kcal Atomic # 14 Polarization: -8.26 SS G_CDS: 2.04 Total: -6.21 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -0.28 Total: 18.29 kcal Total: -29.25 1.02 -28.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_16464788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -253.950 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds