Wall clock time and date at job start Tue Mar 9 2021 13:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 5 5 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 6 6 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.38257 * 119.92844 * 245.27540 * 7 2 1 9 9 C 1.38374 * 120.06561 * 180.02562 * 8 7 2 10 10 F 1.35101 * 120.03116 * 179.97438 * 9 8 7 11 11 C 1.38834 * 119.93418 * 359.97292 * 9 8 7 12 12 O 1.36012 * 120.07288 * 180.02562 * 11 9 8 13 13 S 1.52208 * 113.99671 * 89.99938 * 12 11 9 14 14 O 1.42102 * 106.39809 * 188.54062 * 13 12 11 15 15 O 1.42094 * 106.40228 * 321.46454 * 13 12 11 16 16 C 1.76208 * 107.21567 * 75.00420 * 13 12 11 17 17 C 1.38231 * 119.99742 * 270.27224 * 16 13 12 18 18 C 1.38233 * 119.99694 * 180.02562 * 17 16 13 19 19 C 1.38225 * 120.00189 * 359.97438 * 18 17 16 20 Xx 1.81002 * 120.00257 * 179.97438 * 19 18 17 21 20 F 9.37387 * 85.70016 * 211.21853 * 7 1 2 22 21 F 1.61003 * 90.00199 * 134.99847 * 20 19 18 23 22 F 1.60996 * 90.00042 * 314.99905 * 20 19 18 24 23 F 1.60994 * 90.00257 * 224.99977 * 20 19 18 25 24 F 1.61004 * 89.99942 * 44.99704 * 20 19 18 26 25 C 1.38238 * 120.00102 * 359.95309 * 19 18 17 27 26 C 1.38228 * 119.99959 * 89.99577 * 16 13 12 28 27 C 1.38836 * 119.85947 * 0.02562 * 11 9 8 29 28 F 1.35096 * 120.03436 * 179.97438 * 28 11 9 30 29 C 1.38255 * 119.93232 * 65.00210 * 7 2 1 31 30 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 32 31 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 33 32 H 1.07988 * 119.96649 * 359.97438 * 8 7 2 34 33 H 1.08007 * 120.00396 * 359.97438 * 17 16 13 35 34 H 1.08003 * 119.99813 * 179.97438 * 18 17 16 36 35 H 1.08000 * 120.00061 * 180.02562 * 26 19 18 37 36 H 1.08000 * 120.00248 * 0.20882 * 27 16 13 38 37 H 1.08003 * 119.95877 * 0.24606 * 30 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5549 2.4565 1.2125 6 1 3.5350 1.7565 0.0006 7 6 1.9313 -0.7104 1.2305 8 6 2.6338 -0.0094 2.1932 9 6 3.0967 -0.6589 3.3239 10 9 3.7835 0.0266 4.2640 11 6 2.8548 -2.0157 3.4914 12 8 3.3081 -2.6569 4.6019 13 16 2.3236 -2.6554 5.7628 14 8 3.0240 -3.1779 6.8834 15 8 1.7030 -1.3772 5.7609 16 6 1.0608 -3.8223 5.3771 17 6 -0.0645 -3.4187 4.6832 18 6 -1.0554 -4.3339 4.3811 19 6 -0.9207 -5.6528 4.7724 20 9 -3.3718 -7.9173 4.0242 21 9 -1.0990 -7.9091 3.9087 22 9 -3.3380 -5.7932 4.8460 23 9 -2.1392 -7.4314 5.8770 24 9 -2.2979 -6.2708 2.8777 25 6 0.2054 -6.0567 5.4649 26 6 1.1982 -5.1424 5.7634 27 6 2.1491 -2.7168 2.5228 28 9 1.9121 -4.0372 2.6819 29 6 1.6839 -2.0604 1.3970 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5139 -0.8900 32 1 2.8220 1.0458 2.0622 33 1 -0.1700 -2.3881 4.3778 34 1 -1.9349 -4.0185 3.8393 35 1 0.3108 -7.0873 5.7703 36 1 2.0780 -5.4579 6.3045 37 1 1.1345 -2.6050 0.6434 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_6672276_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:49 Heat of formation + Delta-G solvation = 227.536991 kcal Electronic energy + Delta-G solvation = -40961.519380 eV Core-core repulsion = 34219.422996 eV Total energy + Delta-G solvation = -6742.096384 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 424.022 amu Computer time = 23.38 seconds Orbital eigenvalues (eV) -50.53651 -50.49281 -44.45455 -44.33945 -44.22428 -44.16182 -43.70052 -42.33115 -41.34751 -40.13112 -38.93755 -37.59029 -37.39221 -33.30283 -33.14741 -32.58024 -31.94233 -27.44481 -25.08291 -24.91535 -24.59046 -23.78529 -22.25172 -20.69310 -19.91234 -19.38663 -18.98819 -18.90975 -18.40965 -17.68811 -17.43938 -17.22134 -16.91364 -16.80258 -16.71505 -16.64766 -16.11316 -15.96900 -15.70779 -15.58826 -15.58476 -15.40601 -15.20842 -14.85411 -14.72023 -14.62512 -14.48690 -14.45412 -14.29126 -14.23209 -14.15670 -14.09193 -13.98982 -13.81017 -13.79014 -13.73429 -13.68769 -13.67487 -13.27083 -13.23584 -13.16643 -12.80921 -12.45064 -12.35697 -12.01327 -11.96474 -11.85740 -11.72228 -11.47076 -11.13695 -10.56820 -10.28468 -10.20529 -5.34315 -4.88296 -3.53186 -1.72032 -1.43437 -0.81895 -0.67950 -0.51499 0.62895 1.13226 1.29324 1.50348 1.55425 1.69859 1.98290 2.00054 2.08192 2.33466 2.40801 2.60634 2.80853 2.96395 2.98524 3.11361 3.16147 3.47733 3.63170 3.64651 3.76067 3.80517 3.88137 4.10505 4.11221 4.14180 4.28873 4.36078 4.47724 4.55335 4.58823 4.82283 5.20121 6.82461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.076 4.076 3 Si 0.947 3.053 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.252 1.252 7 C 0.012 3.988 8 C -0.153 4.153 9 C 0.155 3.845 10 F -0.117 7.117 11 C -0.031 4.031 12 O -0.636 6.636 13 S 2.683 3.317 14 O -0.923 6.923 15 O -0.940 6.940 16 C -0.699 4.699 17 C 0.047 3.953 18 C -0.121 4.121 19 C 0.396 3.604 20 F -0.198 7.198 21 F -0.161 7.161 22 F -0.165 7.165 23 F -0.167 7.167 24 F -0.156 7.156 25 C -0.124 4.124 26 C 0.064 3.936 27 C 0.131 3.869 28 F -0.110 7.110 29 C -0.103 4.103 30 H 0.407 0.593 31 H 0.128 0.872 32 H 0.167 0.833 33 H 0.220 0.780 34 H 0.212 0.788 35 H 0.210 0.790 36 H 0.225 0.775 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 9.220 -6.983 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.175 1.175 5 H -0.188 1.188 6 H -0.176 1.176 7 C 0.011 3.989 8 C -0.172 4.172 9 C 0.133 3.867 10 F -0.095 7.095 11 C -0.076 4.076 12 O -0.594 6.594 13 S 2.773 3.227 14 O -0.921 6.921 15 O -0.938 6.938 16 C -0.781 4.781 17 C 0.029 3.971 18 C -0.138 4.138 19 C 0.391 3.609 20 F -0.198 7.198 21 F -0.160 7.160 22 F -0.163 7.163 23 F -0.165 7.165 24 F -0.154 7.154 25 C -0.142 4.142 26 C 0.046 3.954 27 C 0.109 3.891 28 F -0.088 7.088 29 C -0.121 4.121 30 H 0.259 0.741 31 H 0.145 0.855 32 H 0.184 0.816 33 H 0.236 0.764 34 H 0.229 0.771 35 H 0.227 0.773 36 H 0.242 0.758 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.557 10.094 -5.988 13.959 hybrid contribution -1.592 -1.932 -0.266 2.518 sum 5.965 8.162 -6.254 11.888 Atomic orbital electron populations 1.86427 1.15793 1.82319 1.51773 1.24627 0.86931 1.09906 0.97274 0.85684 0.80418 0.75601 0.81161 1.17512 1.18754 1.17581 1.19433 0.92343 0.92941 0.94223 1.21345 1.01046 1.02628 0.92162 1.17410 0.93852 0.87190 0.88209 1.91611 1.76034 1.78822 1.63059 1.18173 1.09583 0.90651 0.89157 1.85823 1.61017 1.77348 1.35261 1.02712 0.72753 0.73691 0.73503 1.93687 1.71326 1.80682 1.46405 1.93687 1.77118 1.37924 1.85102 1.31855 1.18411 1.14123 1.13728 1.21643 0.85966 1.00013 0.89454 1.22238 1.04103 0.85110 1.02377 1.27997 0.64592 0.68403 0.99898 2.00000 1.81152 1.97293 1.41336 1.99920 1.54820 1.93600 1.67620 1.99922 1.84482 1.76660 1.55257 1.99922 1.98268 1.95943 1.22410 1.99920 1.81031 1.97754 1.36743 1.22327 0.87189 1.06867 0.97827 1.21627 0.95957 0.86813 0.91028 1.17516 0.98140 0.78705 0.94737 1.91650 1.92038 1.29856 1.95273 1.21381 0.99943 0.94371 0.96437 0.74057 0.85482 0.81574 0.76364 0.77133 0.77350 0.75827 0.78896 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 628. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 7.52 12.81 -148.98 -1.91 5.61 16 2 C -0.08 1.12 2.79 71.24 0.20 1.32 16 3 Si 0.95 -10.44 25.14 68.60 1.72 -8.71 16 4 H -0.25 2.46 7.11 99.48 0.71 3.16 16 5 H -0.26 1.86 7.03 99.48 0.70 2.56 16 6 H -0.25 2.35 7.11 99.48 0.71 3.06 16 7 C 0.01 -0.13 5.38 -19.86 -0.11 -0.24 16 8 C -0.15 1.19 8.64 22.31 0.19 1.38 16 9 C 0.16 -0.53 6.56 22.44 0.15 -0.38 16 10 F -0.12 -0.08 16.92 44.97 0.76 0.68 16 11 C -0.03 0.14 4.81 22.56 0.11 0.25 16 12 O -0.64 2.05 9.89 -62.96 -0.62 1.42 16 13 S 2.68 -9.16 5.42 -56.49 -0.31 -9.47 16 14 O -0.92 -1.43 17.27 -118.78 -2.05 -3.48 16 15 O -0.94 0.52 15.45 -118.78 -1.84 -1.31 16 16 C -0.70 6.33 4.36 22.27 0.10 6.43 16 17 C 0.05 -0.53 7.75 22.27 0.17 -0.36 16 18 C -0.12 0.99 8.62 22.27 0.19 1.18 16 19 C 0.40 -0.79 4.82 22.27 0.11 -0.69 16 20 F -0.20 -4.63 16.66 44.97 0.75 -3.88 16 21 F -0.16 -2.04 15.31 44.97 0.69 -1.35 16 22 F -0.16 -2.14 15.32 44.97 0.69 -1.46 16 23 F -0.17 -2.25 15.32 44.97 0.69 -1.56 16 24 F -0.16 -1.84 15.31 44.97 0.69 -1.15 16 25 C -0.12 0.96 8.62 22.27 0.19 1.15 16 26 C 0.06 -0.71 9.52 22.27 0.21 -0.50 16 27 C 0.13 -1.16 6.16 22.44 0.14 -1.02 16 28 F -0.11 0.98 14.92 44.97 0.67 1.65 16 29 C -0.10 1.28 9.66 22.31 0.22 1.49 16 30 H 0.41 -8.53 8.74 -74.06 -0.65 -9.17 16 31 H 0.13 -2.58 7.96 -2.39 -0.02 -2.60 16 32 H 0.17 -1.63 4.85 -2.92 -0.01 -1.64 16 33 H 0.22 -3.70 7.62 -2.91 -0.02 -3.73 16 34 H 0.21 -2.27 7.40 -2.91 -0.02 -2.29 16 35 H 0.21 -2.04 7.40 -2.91 -0.02 -2.06 16 36 H 0.23 -3.80 7.62 -2.91 -0.02 -3.82 16 37 H 0.19 -3.31 8.06 -2.91 -0.02 -3.34 16 Total: 0.00 -36.02 364.31 3.12 -32.89 By element: Atomic # 1 Polarization: -21.19 SS G_CDS: 1.32 Total: -19.87 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 1.87 Total: 10.00 kcal Atomic # 8 Polarization: 8.65 SS G_CDS: -6.42 Total: 2.24 kcal Atomic # 9 Polarization: -12.02 SS G_CDS: 4.94 Total: -7.08 kcal Atomic # 14 Polarization: -10.44 SS G_CDS: 1.72 Total: -8.71 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -0.31 Total: -9.47 kcal Total: -36.02 3.12 -32.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_6672276_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.431 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 227.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.39 seconds