Wall clock time and date at job start Tue Mar 9 2021 13:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46864 * 2 1 4 4 C 1.34231 * 116.99652 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99906 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00216 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46561 * 300.00494 * 6 4 3 8 8 C 1.52998 * 109.46999 * 59.99730 * 6 4 3 9 9 C 1.52998 * 109.47150 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47165 * 300.00151 * 9 8 6 11 11 F 1.39902 * 109.47439 * 300.00024 * 10 9 8 12 12 C 1.52998 * 109.47165 * 179.97438 * 10 9 8 13 13 S 1.81401 * 109.47242 * 60.00222 * 12 10 9 14 14 O 1.42096 * 110.54019 * 68.37565 * 13 12 10 15 15 O 1.42102 * 110.54015 * 291.62417 * 13 12 10 16 16 O 1.52196 * 104.44799 * 180.02562 * 13 12 10 17 17 C 1.35959 * 114.00372 * 75.00221 * 16 13 12 18 18 C 1.38906 * 120.06346 * 89.99570 * 17 16 13 19 19 F 1.35100 * 120.04659 * 0.02562 * 18 17 16 20 20 C 1.38333 * 119.90213 * 180.02562 * 18 17 16 21 21 C 1.38250 * 120.03275 * 359.97438 * 20 18 17 22 22 C 1.50698 * 119.93910 * 180.02562 * 21 20 18 23 23 O 1.42904 * 109.46988 * 244.97699 * 22 21 20 24 24 Si 1.86297 * 109.47108 * 4.97733 * 22 21 20 25 25 C 1.38271 * 120.12488 * 359.97438 * 21 20 18 26 26 C 1.38183 * 120.09338 * 0.25977 * 25 21 20 27 27 C 1.53003 * 109.46990 * 60.00351 * 10 9 8 28 28 C 1.52999 * 109.47397 * 180.02562 * 6 4 3 29 29 H 1.08997 * 109.47017 * 60.00316 * 1 2 3 30 30 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46913 * 300.00047 * 1 2 3 32 32 H 1.08995 * 109.46893 * 239.99694 * 2 1 3 33 33 H 1.09004 * 109.46710 * 119.99417 * 2 1 3 34 34 H 1.08999 * 109.47356 * 300.00339 * 8 6 4 35 35 H 1.09006 * 109.47028 * 60.00257 * 8 6 4 36 36 H 1.08999 * 109.47342 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47155 * 60.00525 * 9 8 6 38 38 H 1.09006 * 109.47098 * 299.99962 * 12 10 9 39 39 H 1.09002 * 109.47120 * 180.02562 * 12 10 9 40 40 H 1.08002 * 119.98551 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47409 * 124.98284 * 22 21 20 42 42 H 0.96699 * 113.99844 * 179.97438 * 23 22 21 43 43 H 1.48502 * 110.00112 * 178.68230 * 24 22 21 44 44 H 1.48496 * 110.00081 * 299.99835 * 24 22 21 45 45 H 1.08002 * 119.94988 * 179.97438 * 25 21 20 46 46 H 1.07995 * 120.01115 * 179.72252 * 26 25 21 47 47 H 1.08991 * 109.47487 * 59.99845 * 27 10 9 48 48 H 1.08999 * 109.47135 * 179.97438 * 27 10 9 49 49 H 1.08999 * 109.47121 * 59.99748 * 28 6 4 50 50 H 1.09006 * 109.46774 * 299.99830 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 6 3.4486 3.6851 1.2485 9 6 4.0330 5.0991 1.2477 10 6 5.5608 5.0196 1.2482 11 9 5.9920 4.3375 2.3911 12 6 6.1452 6.4336 1.2467 13 16 5.5855 7.3207 2.7267 14 8 6.1694 6.7602 3.8946 15 8 4.1895 7.5771 2.6562 16 8 6.2256 8.6965 2.6095 17 6 5.6351 9.5047 1.6893 18 6 4.5880 10.3369 2.0641 19 9 4.1549 10.3449 3.3438 20 6 3.9892 11.1575 1.1250 21 6 4.4330 11.1494 -0.1843 22 6 3.7796 12.0446 -1.2054 23 8 3.1283 11.2437 -2.1937 24 14 2.5248 13.1343 -0.3636 25 6 5.4760 10.3223 -0.5584 26 6 6.0746 9.4970 0.3743 27 6 6.0330 4.2719 -0.0005 28 6 5.4487 2.8573 0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3601 3.7422 1.2480 35 1 3.7841 3.1535 2.1390 36 1 3.6970 5.6317 2.1374 37 1 3.6971 5.6305 0.3573 38 1 5.8093 6.9646 0.3559 39 1 7.2337 6.3769 1.2466 40 1 3.1747 11.8047 1.4148 41 1 4.5379 12.6652 -1.6828 42 1 2.6848 11.7549 -2.8844 43 1 1.8960 14.0441 -1.3546 44 1 1.4853 12.3000 0.2910 45 1 5.8201 10.3179 -1.5821 46 1 6.8861 8.8482 0.0796 47 1 5.6971 4.8033 -0.8909 48 1 7.1215 4.2156 -0.0004 49 1 5.7847 2.3248 -0.8896 50 1 5.7845 2.3256 0.8904 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_7834718_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:05 Heat of formation + Delta-G solvation = -279.704384 kcal Electronic energy + Delta-G solvation = -40819.735192 eV Core-core repulsion = 35157.053929 eV Total energy + Delta-G solvation = -5662.681263 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -50.17973 -49.06770 -42.27350 -41.65731 -40.07071 -39.15611 -38.36438 -37.77546 -37.51285 -37.24851 -34.30686 -32.87091 -32.63247 -32.18469 -31.99417 -29.18519 -27.34556 -25.21117 -24.60777 -24.31029 -23.72654 -23.42190 -22.01564 -21.76649 -20.92740 -19.75870 -19.15169 -19.09251 -18.76723 -18.67082 -18.39654 -17.84870 -17.63917 -17.60483 -17.10443 -16.99442 -16.69219 -16.60939 -16.38528 -16.16415 -15.84023 -15.52888 -15.36504 -15.22498 -15.00301 -14.88663 -14.59522 -14.53467 -14.28172 -14.21589 -14.06881 -13.84945 -13.82278 -13.73914 -13.56825 -13.36287 -13.28490 -13.23984 -13.18978 -13.08174 -13.06790 -12.87015 -12.66286 -12.50172 -12.41324 -12.30045 -12.04060 -11.97827 -11.78732 -11.49244 -11.30095 -11.17003 -10.83567 -10.53045 -10.08686 -5.17016 -1.33667 -0.47683 -0.32529 0.78020 0.98910 1.21142 1.39598 1.63132 1.75150 1.86363 2.30017 2.51211 2.66914 2.73632 2.90192 2.98335 3.16433 3.24877 3.25442 3.38590 3.44526 3.51461 3.56627 3.65078 3.68554 3.72379 3.89198 3.93216 3.96591 3.98695 4.02075 4.05492 4.10928 4.16451 4.28186 4.30093 4.42630 4.44608 4.47771 4.50944 4.63322 4.66602 4.71026 4.74080 4.81125 4.84543 4.86917 4.89815 5.00734 5.03005 5.15203 5.30250 5.49200 6.13597 6.76866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.503 6.503 6 C -0.082 4.082 7 H 0.114 0.886 8 C -0.112 4.112 9 C -0.170 4.170 10 C 0.137 3.863 11 F -0.189 7.189 12 C -0.686 4.686 13 S 2.588 3.412 14 O -0.901 6.901 15 O -0.936 6.936 16 O -0.652 6.652 17 C 0.030 3.970 18 C 0.146 3.854 19 F -0.111 7.111 20 C -0.136 4.136 21 C -0.023 4.023 22 C -0.079 4.079 23 O -0.533 6.533 24 Si 0.678 3.322 25 C -0.084 4.084 26 C -0.103 4.103 27 C -0.128 4.128 28 C -0.110 4.110 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.386 0.614 43 H -0.254 1.254 44 H -0.248 1.248 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 5.975 -8.012 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.101 4.101 7 H 0.132 0.868 8 C -0.149 4.149 9 C -0.207 4.207 10 C 0.117 3.883 11 F -0.169 7.169 12 C -0.812 4.812 13 S 2.682 3.318 14 O -0.899 6.899 15 O -0.935 6.935 16 O -0.611 6.611 17 C -0.013 4.013 18 C 0.124 3.876 19 F -0.089 7.089 20 C -0.155 4.155 21 C -0.024 4.024 22 C -0.188 4.188 23 O -0.341 6.341 24 Si 0.578 3.422 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.166 4.166 28 C -0.147 4.147 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.107 0.893 42 H 0.235 0.765 43 H -0.178 1.178 44 H -0.173 1.173 45 H 0.169 0.831 46 H 0.173 0.827 47 H 0.109 0.891 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.039 5.564 -6.751 8.810 hybrid contribution 0.187 -0.854 -1.308 1.573 sum -0.852 4.710 -8.058 9.373 Atomic orbital electron populations 1.21823 0.92309 1.03265 1.03671 1.23088 0.95609 0.79817 1.02766 1.86502 1.24305 1.32783 1.83769 1.23603 0.80752 0.92423 0.72315 1.90693 1.60459 1.43048 1.44857 1.21171 0.96661 0.90214 1.02083 0.86802 1.21501 1.02413 0.94060 0.96923 1.22665 0.91843 0.99483 1.06738 1.20485 0.94960 0.87387 0.85429 1.92990 1.91150 1.81136 1.51631 1.31582 1.14623 1.09652 1.25310 1.05883 0.74828 0.74253 0.76825 1.93702 1.78030 1.75825 1.42389 1.93676 1.31800 1.81128 1.86868 1.85810 1.70092 1.43206 1.61973 1.18090 0.96947 0.98594 0.87651 1.17516 0.93208 0.96457 0.80445 1.91614 1.88158 1.94827 1.34278 1.21043 1.01674 1.00380 0.92383 1.19302 0.94764 0.95973 0.92380 1.24777 1.03101 0.97614 0.93335 1.86561 1.72550 1.35725 1.39258 0.94978 0.81029 0.80914 0.85292 1.20989 0.94917 0.94194 1.00151 1.21345 1.00240 1.00862 0.89844 1.22102 1.02568 0.95893 0.96041 1.21494 0.91671 0.96366 1.05184 0.91384 0.90012 0.91316 0.91115 0.91057 0.88846 0.90075 0.88295 0.87975 0.82709 0.82628 0.82631 0.89263 0.76473 1.17812 1.17253 0.83068 0.82718 0.89090 0.89210 0.89636 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 10.29 37.16 0.38 0.58 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.68 10.12 -39.26 -0.40 -1.07 16 4 C 0.47 1.10 7.26 36.01 0.26 1.36 16 5 O -0.50 -2.64 15.73 -18.75 -0.29 -2.93 16 6 C -0.08 0.04 2.63 -91.77 -0.24 -0.20 16 7 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 8 C -0.11 0.03 5.01 -26.73 -0.13 -0.10 16 9 C -0.17 0.09 4.52 -26.73 -0.12 -0.03 16 10 C 0.14 -0.05 0.88 -90.62 -0.08 -0.13 16 11 F -0.19 -0.54 15.05 2.25 0.03 -0.51 16 12 C -0.69 1.43 4.74 37.16 0.18 1.60 16 13 S 2.59 6.61 4.51 -107.50 -0.49 6.12 16 14 O -0.90 -5.92 17.61 -67.03 -1.18 -7.10 16 15 O -0.94 -3.63 13.57 -67.04 -0.91 -4.54 16 16 O -0.65 -1.35 9.92 -51.94 -0.52 -1.87 16 17 C 0.03 0.02 4.80 -39.18 -0.19 -0.17 16 18 C 0.15 0.24 6.48 -39.30 -0.25 -0.02 16 19 F -0.11 -0.41 16.73 2.25 0.04 -0.38 16 20 C -0.14 0.11 8.64 -39.54 -0.34 -0.24 16 21 C -0.02 0.05 5.38 -104.61 -0.56 -0.51 16 22 C -0.08 0.28 2.79 36.00 0.10 0.38 16 23 O -0.53 1.33 12.81 -35.23 -0.45 0.88 16 24 Si 0.68 -2.19 29.84 -169.99 -5.07 -7.26 16 25 C -0.08 0.27 9.68 -39.59 -0.38 -0.11 16 26 C -0.10 0.29 8.46 -39.45 -0.33 -0.04 16 27 C -0.13 0.30 5.00 -26.70 -0.13 0.16 16 28 C -0.11 0.05 4.38 -26.71 -0.12 -0.07 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 33 H 0.07 0.06 8.13 -51.93 -0.42 -0.36 16 34 H 0.09 -0.09 8.11 -51.93 -0.42 -0.51 16 35 H 0.08 0.07 7.80 -51.93 -0.41 -0.33 16 36 H 0.10 0.08 5.46 -51.93 -0.28 -0.21 16 37 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 38 H 0.15 -0.85 6.58 -51.92 -0.34 -1.20 16 39 H 0.16 -0.68 8.14 -51.92 -0.42 -1.10 16 40 H 0.16 -0.37 4.86 -52.49 -0.26 -0.62 16 41 H 0.09 -0.52 7.96 -51.93 -0.41 -0.93 16 42 H 0.39 -2.38 8.74 45.56 0.40 -1.98 16 43 H -0.25 0.31 7.11 56.52 0.40 0.71 16 44 H -0.25 -0.03 7.05 56.52 0.40 0.37 16 45 H 0.15 -0.83 8.06 -52.49 -0.42 -1.25 16 46 H 0.16 -0.97 7.47 -52.49 -0.39 -1.36 16 47 H 0.09 -0.42 8.14 -51.93 -0.42 -0.85 16 48 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 49 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 50 H 0.08 0.12 7.76 -51.93 -0.40 -0.28 16 LS Contribution 419.49 15.07 6.32 6.32 Total: 0.00 -12.71 419.49 -11.44 -24.15 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -6.79 Total: -14.56 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.74 Total: 2.74 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -3.75 Total: -16.63 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.07 Total: -0.89 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: -5.07 Total: -7.26 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -0.49 Total: 6.12 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -12.71 -11.44 -24.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -255.556 kcal (2) G-P(sol) polarization free energy of solvation -12.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds