Wall clock time and date at job start Tue Mar 9 2021 13:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45203 * 109.46864 * 2 1 4 4 C 1.34231 * 116.99652 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99906 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00216 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.46561 * 300.00494 * 6 4 3 8 8 C 1.52998 * 109.46999 * 59.99730 * 6 4 3 9 9 C 1.52998 * 109.47150 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47165 * 300.00151 * 9 8 6 11 11 F 1.39902 * 109.47439 * 300.00024 * 10 9 8 12 12 C 1.52998 * 109.47165 * 179.97438 * 10 9 8 13 13 S 1.81401 * 109.47242 * 60.00222 * 12 10 9 14 14 O 1.42096 * 110.54019 * 68.37565 * 13 12 10 15 15 O 1.42102 * 110.54015 * 291.62417 * 13 12 10 16 16 O 1.52196 * 104.44799 * 180.02562 * 13 12 10 17 17 C 1.35959 * 114.00372 * 75.00221 * 16 13 12 18 18 C 1.38906 * 120.06346 * 89.99570 * 17 16 13 19 19 F 1.35100 * 120.04659 * 0.02562 * 18 17 16 20 20 C 1.38333 * 119.90213 * 180.02562 * 18 17 16 21 21 C 1.38250 * 120.03275 * 359.97438 * 20 18 17 22 22 C 1.50698 * 119.93910 * 180.02562 * 21 20 18 23 23 O 1.42904 * 109.46988 * 244.97699 * 22 21 20 24 24 Si 1.86297 * 109.47108 * 4.97733 * 22 21 20 25 25 C 1.38271 * 120.12488 * 359.97438 * 21 20 18 26 26 C 1.38183 * 120.09338 * 0.25977 * 25 21 20 27 27 C 1.53003 * 109.46990 * 60.00351 * 10 9 8 28 28 C 1.52999 * 109.47397 * 180.02562 * 6 4 3 29 29 H 1.08997 * 109.47017 * 60.00316 * 1 2 3 30 30 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46913 * 300.00047 * 1 2 3 32 32 H 1.08995 * 109.46893 * 239.99694 * 2 1 3 33 33 H 1.09004 * 109.46710 * 119.99417 * 2 1 3 34 34 H 1.08999 * 109.47356 * 300.00339 * 8 6 4 35 35 H 1.09006 * 109.47028 * 60.00257 * 8 6 4 36 36 H 1.08999 * 109.47342 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47155 * 60.00525 * 9 8 6 38 38 H 1.09006 * 109.47098 * 299.99962 * 12 10 9 39 39 H 1.09002 * 109.47120 * 180.02562 * 12 10 9 40 40 H 1.08002 * 119.98551 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47409 * 124.98284 * 22 21 20 42 42 H 0.96699 * 113.99844 * 179.97438 * 23 22 21 43 43 H 1.48502 * 110.00112 * 178.68230 * 24 22 21 44 44 H 1.48496 * 110.00081 * 299.99835 * 24 22 21 45 45 H 1.08002 * 119.94988 * 179.97438 * 25 21 20 46 46 H 1.07995 * 120.01115 * 179.72252 * 26 25 21 47 47 H 1.08991 * 109.47487 * 59.99845 * 27 10 9 48 48 H 1.08999 * 109.47135 * 179.97438 * 27 10 9 49 49 H 1.08999 * 109.47121 * 59.99748 * 28 6 4 50 50 H 1.09006 * 109.46774 * 299.99830 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4690 -0.8905 8 6 3.4486 3.6851 1.2485 9 6 4.0330 5.0991 1.2477 10 6 5.5608 5.0196 1.2482 11 9 5.9920 4.3375 2.3911 12 6 6.1452 6.4336 1.2467 13 16 5.5855 7.3207 2.7267 14 8 6.1694 6.7602 3.8946 15 8 4.1895 7.5771 2.6562 16 8 6.2256 8.6965 2.6095 17 6 5.6351 9.5047 1.6893 18 6 4.5880 10.3369 2.0641 19 9 4.1549 10.3449 3.3438 20 6 3.9892 11.1575 1.1250 21 6 4.4330 11.1494 -0.1843 22 6 3.7796 12.0446 -1.2054 23 8 3.1283 11.2437 -2.1937 24 14 2.5248 13.1343 -0.3636 25 6 5.4760 10.3223 -0.5584 26 6 6.0746 9.4970 0.3743 27 6 6.0330 4.2719 -0.0005 28 6 5.4487 2.8573 0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3601 3.7422 1.2480 35 1 3.7841 3.1535 2.1390 36 1 3.6970 5.6317 2.1374 37 1 3.6971 5.6305 0.3573 38 1 5.8093 6.9646 0.3559 39 1 7.2337 6.3769 1.2466 40 1 3.1747 11.8047 1.4148 41 1 4.5379 12.6652 -1.6828 42 1 2.6848 11.7549 -2.8844 43 1 1.8960 14.0441 -1.3546 44 1 1.4853 12.3000 0.2910 45 1 5.8201 10.3179 -1.5821 46 1 6.8861 8.8482 0.0796 47 1 5.6971 4.8033 -0.8909 48 1 7.1215 4.2156 -0.0004 49 1 5.7847 2.3248 -0.8896 50 1 5.7845 2.3256 0.8904 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7834718_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:04 Heat of formation + Delta-G solvation = -282.039591 kcal Electronic energy + Delta-G solvation = -40819.836454 eV Core-core repulsion = 35157.053929 eV Total energy + Delta-G solvation = -5662.782526 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.123 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.27163 -49.11065 -42.23325 -41.80027 -39.91367 -39.13191 -38.54836 -37.69275 -37.54589 -37.41386 -34.26260 -32.72366 -32.56442 -32.08371 -31.83253 -29.10993 -27.14683 -25.19856 -24.45585 -24.22439 -23.67763 -23.35813 -22.02502 -21.74586 -20.87422 -19.79388 -19.17613 -19.05317 -18.80816 -18.49641 -18.34086 -17.87030 -17.72737 -17.63177 -17.14332 -16.95926 -16.76887 -16.54017 -16.31057 -16.07792 -15.74304 -15.49683 -15.31420 -15.13128 -15.00580 -14.88777 -14.53544 -14.44239 -14.32610 -14.08336 -14.02061 -13.82386 -13.74116 -13.60410 -13.49146 -13.46847 -13.26978 -13.20094 -13.17796 -13.15534 -12.94046 -12.92110 -12.62976 -12.48782 -12.20351 -12.18593 -11.99305 -11.93748 -11.74847 -11.58354 -11.36726 -11.13222 -10.56264 -10.34418 -9.95978 -4.93132 -1.36372 -0.35478 -0.15734 0.76542 1.05011 1.25495 1.57791 1.58695 1.94802 2.06351 2.28836 2.60145 2.75012 2.79575 3.09632 3.14905 3.27215 3.36695 3.46911 3.52256 3.60713 3.68936 3.70445 3.78273 3.86705 3.92102 3.93611 4.00289 4.01692 4.05823 4.14306 4.26836 4.28452 4.31506 4.43160 4.52101 4.54267 4.61448 4.64324 4.69870 4.77535 4.78562 4.85997 4.88662 4.92330 4.93433 5.00374 5.07880 5.10932 5.11075 5.24649 5.40918 5.49439 6.61268 6.61526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.076 4.076 7 H 0.149 0.851 8 C -0.111 4.111 9 C -0.175 4.175 10 C 0.121 3.879 11 F -0.215 7.215 12 C -0.658 4.658 13 S 2.573 3.427 14 O -0.963 6.963 15 O -0.964 6.964 16 O -0.661 6.661 17 C 0.006 3.994 18 C 0.105 3.895 19 F -0.138 7.138 20 C -0.144 4.144 21 C -0.027 4.027 22 C -0.068 4.068 23 O -0.548 6.548 24 Si 0.725 3.275 25 C -0.070 4.070 26 C -0.090 4.090 27 C -0.120 4.120 28 C -0.111 4.111 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.202 0.798 39 H 0.188 0.812 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.402 0.598 43 H -0.279 1.279 44 H -0.305 1.305 45 H 0.189 0.811 46 H 0.199 0.801 47 H 0.131 0.869 48 H 0.102 0.898 49 H 0.090 0.910 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 6.928 -12.504 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.095 4.095 7 H 0.167 0.833 8 C -0.148 4.148 9 C -0.212 4.212 10 C 0.102 3.898 11 F -0.196 7.196 12 C -0.788 4.788 13 S 2.674 3.326 14 O -0.961 6.961 15 O -0.962 6.962 16 O -0.620 6.620 17 C -0.036 4.036 18 C 0.083 3.917 19 F -0.117 7.117 20 C -0.162 4.162 21 C -0.028 4.028 22 C -0.178 4.178 23 O -0.359 6.359 24 Si 0.632 3.368 25 C -0.088 4.088 26 C -0.110 4.110 27 C -0.158 4.158 28 C -0.149 4.149 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.219 0.781 39 H 0.205 0.795 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.254 0.746 43 H -0.205 1.205 44 H -0.233 1.233 45 H 0.206 0.794 46 H 0.216 0.784 47 H 0.149 0.851 48 H 0.121 0.879 49 H 0.108 0.892 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.363 6.572 -11.193 12.985 hybrid contribution -0.381 -1.142 0.020 1.204 sum -0.018 5.430 -11.174 12.423 Atomic orbital electron populations 1.21824 0.90657 1.04253 1.03763 1.23246 0.96944 0.79424 1.02398 1.86515 1.24253 1.33391 1.83460 1.24285 0.80584 0.93304 0.71060 1.90672 1.61138 1.44450 1.46670 1.21293 0.96630 0.88486 1.03078 0.83349 1.21461 1.02725 0.94406 0.96254 1.22762 0.92092 0.98946 1.07427 1.20907 0.95107 0.88240 0.85546 1.92951 1.91380 1.81863 1.53408 1.31406 1.16539 1.07750 1.23114 1.06002 0.74264 0.74412 0.77947 1.93624 1.78713 1.77004 1.46800 1.93636 1.33326 1.81597 1.87658 1.85778 1.69694 1.43317 1.63186 1.18568 0.97403 0.98717 0.88934 1.18035 0.94988 0.98646 0.80005 1.91531 1.88732 1.95244 1.36171 1.21166 1.01747 1.00279 0.93046 1.19565 0.95206 0.96306 0.91717 1.24654 1.03175 0.96982 0.93025 1.86514 1.72891 1.36699 1.39749 0.94399 0.80051 0.79236 0.83087 1.21435 0.93407 0.92412 1.01505 1.21853 1.00430 1.00941 0.87756 1.22172 1.03290 0.94301 0.96058 1.21490 0.91639 0.97773 1.03952 0.90965 0.88603 0.91463 0.91139 0.91857 0.88410 0.92513 0.90373 0.84575 0.78075 0.79476 0.82638 0.85527 0.74639 1.20497 1.23265 0.79424 0.78428 0.85057 0.87927 0.89194 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 10.29 71.98 0.74 1.12 16 2 C 0.05 0.12 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.56 10.12 -51.42 -0.52 -2.08 16 4 C 0.46 2.46 7.26 71.24 0.52 2.98 16 5 O -0.54 -6.44 15.73 21.97 0.35 -6.09 16 6 C -0.08 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.15 -1.29 8.14 -2.39 -0.02 -1.31 16 8 C -0.11 0.01 5.01 30.59 0.15 0.16 16 9 C -0.17 0.32 4.52 30.59 0.14 0.46 16 10 C 0.12 -0.27 0.88 -10.79 -0.01 -0.28 16 11 F -0.22 -1.51 15.05 44.97 0.68 -0.84 16 12 C -0.66 4.55 4.74 71.98 0.34 4.89 16 13 S 2.57 16.06 4.51 -56.49 -0.25 15.81 16 14 O -0.96 -15.75 17.61 -118.57 -2.09 -17.84 16 15 O -0.96 -9.53 13.57 -118.57 -1.61 -11.14 16 16 O -0.66 -3.27 9.92 -62.19 -0.62 -3.89 16 17 C 0.01 0.01 4.80 22.53 0.11 0.11 16 18 C 0.10 0.50 6.48 22.45 0.15 0.65 16 19 F -0.14 -1.56 16.73 44.97 0.75 -0.81 16 20 C -0.14 0.14 8.64 22.30 0.19 0.33 16 21 C -0.03 0.17 5.38 -19.85 -0.11 0.07 16 22 C -0.07 0.66 2.79 71.24 0.20 0.86 16 23 O -0.55 4.39 12.81 -148.98 -1.91 2.48 16 24 Si 0.73 -4.47 29.84 68.60 2.05 -2.42 16 25 C -0.07 0.77 9.68 22.26 0.22 0.98 16 26 C -0.09 0.85 8.46 22.36 0.19 1.04 16 27 C -0.12 0.96 5.00 30.61 0.15 1.11 16 28 C -0.11 0.21 4.38 30.61 0.13 0.34 16 29 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.06 0.22 8.13 -2.39 -0.02 0.20 16 34 H 0.10 -0.14 8.11 -2.39 -0.02 -0.16 16 35 H 0.06 0.25 7.80 -2.38 -0.02 0.24 16 36 H 0.08 0.24 5.46 -2.39 -0.01 0.22 16 37 H 0.14 -1.24 8.14 -2.39 -0.02 -1.26 16 38 H 0.20 -3.35 6.58 -2.39 -0.02 -3.37 16 39 H 0.19 -2.38 8.14 -2.39 -0.02 -2.40 16 40 H 0.16 -0.41 4.86 -2.91 -0.01 -0.42 16 41 H 0.13 -2.06 7.96 -2.39 -0.02 -2.08 16 42 H 0.40 -6.04 8.74 -74.06 -0.65 -6.68 16 43 H -0.28 0.58 7.11 99.48 0.71 1.29 16 44 H -0.30 -0.94 7.05 99.48 0.70 -0.24 16 45 H 0.19 -3.34 8.06 -2.91 -0.02 -3.36 16 46 H 0.20 -3.69 7.47 -2.91 -0.02 -3.71 16 47 H 0.13 -2.05 8.14 -2.39 -0.02 -2.07 16 48 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 49 H 0.09 -0.23 8.10 -2.39 -0.02 -0.25 16 50 H 0.05 0.23 7.76 -2.38 -0.02 0.21 16 Total: 0.00 -39.06 419.49 0.73 -38.33 By element: Atomic # 1 Polarization: -27.39 SS G_CDS: 0.38 Total: -27.00 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 3.53 Total: 15.49 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -6.40 Total: -38.56 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 1.43 Total: -1.64 kcal Atomic # 14 Polarization: -4.47 SS G_CDS: 2.05 Total: -2.42 kcal Atomic # 16 Polarization: 16.06 SS G_CDS: -0.25 Total: 15.81 kcal Total: -39.06 0.73 -38.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -243.709 kcal (2) G-P(sol) polarization free energy of solvation -39.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds