Wall clock time and date at job start Tue Mar 9 2021 13:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 H 1.48494 * 109.46934 * 60.00049 * 3 2 1 5 5 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 6 6 H 1.48495 * 109.46973 * 300.00306 * 3 2 1 7 7 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 8 8 C 1.38216 * 119.93356 * 245.27174 * 7 2 1 9 9 C 1.38229 * 120.09579 * 180.02562 * 8 7 2 10 10 C 1.38623 * 119.96890 * 359.97438 * 9 8 7 11 11 O 1.35949 * 120.06307 * 180.02562 * 10 9 8 12 12 S 1.52193 * 114.00583 * 90.00023 * 11 10 9 13 13 O 1.42097 * 106.40591 * 188.54262 * 12 11 10 14 14 O 1.42110 * 106.39942 * 321.46173 * 12 11 10 15 15 C 1.76200 * 107.21937 * 74.99834 * 12 11 10 16 16 C 1.38241 * 119.99677 * 270.27763 * 15 12 11 17 17 C 1.38238 * 119.99461 * 179.97438 * 16 15 12 18 18 C 1.38230 * 120.00053 * 359.97438 * 17 16 15 19 Xx 1.81005 * 119.99863 * 179.97438 * 18 17 16 20 19 F 9.37328 * 85.73086 * 211.19596 * 7 1 2 21 20 F 1.60994 * 90.00179 * 134.99870 * 19 18 17 22 21 F 1.61001 * 90.00072 * 314.99886 * 19 18 17 23 22 F 1.61000 * 89.99950 * 224.99726 * 19 18 17 24 23 F 1.61000 * 90.00050 * 44.99726 * 19 18 17 25 24 C 1.38233 * 120.00385 * 359.95329 * 18 17 16 26 25 C 1.38230 * 120.00098 * 90.00388 * 15 12 11 27 26 C 1.38949 * 119.87117 * 0.02562 * 10 9 8 28 27 F 1.35099 * 120.04521 * 180.02562 * 27 10 9 29 28 C 1.38288 * 119.90946 * 359.72591 * 27 10 9 30 29 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 31 30 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 32 31 H 1.08001 * 119.95602 * 359.97438 * 8 7 2 33 32 H 1.07996 * 120.01561 * 179.97438 * 9 8 7 34 33 H 1.08001 * 120.00244 * 359.97411 * 16 15 12 35 34 H 1.07999 * 119.99721 * 179.97438 * 17 16 15 36 35 H 1.08001 * 120.00305 * 180.02562 * 25 18 17 37 36 H 1.08001 * 119.99808 * 0.20748 * 26 15 12 38 37 H 1.07993 * 119.98832 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4564 1.2125 5 1 3.5351 1.7563 0.0006 6 1 1.5551 2.4565 -1.2124 7 6 1.9313 -0.7105 1.2304 8 6 2.6336 -0.0100 2.1929 9 6 3.0964 -0.6584 3.3226 10 6 2.8555 -2.0131 3.4909 11 8 3.3092 -2.6527 4.6015 12 16 2.3253 -2.6508 5.7626 13 8 3.0263 -3.1717 6.8835 14 8 1.7039 -1.3728 5.7598 15 6 1.0630 -3.8185 5.3785 16 6 -0.0629 -3.4161 4.6846 17 6 -1.0530 -4.3324 4.3828 18 6 -0.9170 -5.6511 4.7743 19 9 -3.3687 -7.9171 4.0288 20 9 -1.0934 -7.9077 3.9112 21 9 -3.3341 -5.7937 4.8483 22 9 -2.1336 -7.4306 5.8795 23 9 -2.2939 -6.2707 2.8800 24 6 0.2096 -6.0538 5.4668 25 6 1.2011 -5.1382 5.7659 26 6 2.1493 -2.7160 2.5225 27 9 1.9121 -4.0363 2.6832 28 6 1.6843 -2.0611 1.3968 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 2.8219 1.0454 2.0619 32 1 3.6453 -0.1099 4.0736 33 1 -0.1690 -2.3858 4.3784 34 1 -1.9328 -4.0179 3.8411 35 1 0.3161 -7.0842 5.7724 36 1 2.0812 -5.4528 6.3071 37 1 1.1357 -2.6062 0.6431 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7834718_8643202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:28 Heat of formation + Delta-G solvation = 268.854689 kcal Electronic energy + Delta-G solvation = -37997.501507 eV Core-core repulsion = 31726.650768 eV Total energy + Delta-G solvation = -6270.850739 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 406.031 amu Computer time = 23.96 seconds Orbital eigenvalues (eV) -50.35011 -44.74938 -44.54423 -43.99022 -43.89146 -43.68654 -42.33599 -41.30589 -40.03853 -38.82469 -37.48640 -37.36943 -33.27864 -33.09664 -32.36581 -32.04461 -27.18846 -24.96804 -24.87752 -24.41125 -23.70926 -21.98512 -20.52302 -19.72461 -19.08959 -18.67211 -18.35437 -17.75747 -17.54556 -16.96574 -16.79885 -16.61905 -16.38637 -16.11197 -15.82566 -15.69878 -15.60413 -15.52916 -15.40370 -15.20578 -15.01294 -14.96339 -14.75763 -14.54249 -14.42249 -14.39846 -14.23673 -14.17752 -13.96076 -13.71569 -13.65550 -13.61862 -13.57773 -13.54823 -13.38066 -13.21098 -13.16752 -12.89065 -12.72202 -12.65004 -12.25170 -12.22179 -12.06833 -11.64620 -11.57771 -11.25614 -11.09639 -10.52939 -10.27359 -10.11449 -5.40364 -4.98829 -3.41897 -1.61736 -1.31574 -0.79866 -0.40838 -0.16591 0.78940 1.18370 1.34086 1.53891 1.59520 2.00439 2.03051 2.10873 2.36101 2.50344 2.64779 2.64933 3.08923 3.19021 3.25800 3.42576 3.62535 3.64951 3.66941 3.79060 3.82102 3.90998 3.94840 4.11285 4.28938 4.44801 4.56544 4.56968 4.67515 4.71824 4.79906 5.03588 5.43193 6.75330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.081 4.081 3 Si 0.968 3.032 4 H -0.237 1.237 5 H -0.249 1.249 6 H -0.282 1.282 7 C -0.060 4.060 8 C -0.114 4.114 9 C -0.056 4.056 10 C 0.005 3.995 11 O -0.641 6.641 12 S 2.695 3.305 13 O -0.928 6.928 14 O -0.936 6.936 15 C -0.700 4.700 16 C 0.048 3.952 17 C -0.126 4.126 18 C 0.408 3.592 19 F -0.056 7.056 20 F -0.116 7.116 21 F -0.205 7.205 22 F -0.255 7.255 23 F -0.217 7.217 24 C -0.129 4.129 25 C 0.060 3.940 26 C 0.092 3.908 27 F -0.126 7.126 28 C -0.106 4.106 29 H 0.394 0.606 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.221 0.779 34 H 0.203 0.797 35 H 0.203 0.797 36 H 0.224 0.776 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 10.298 -2.463 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.160 1.160 5 H -0.172 1.172 6 H -0.207 1.207 7 C -0.062 4.062 8 C -0.132 4.132 9 C -0.076 4.076 10 C -0.037 4.037 11 O -0.600 6.600 12 S 2.784 3.216 13 O -0.927 6.927 14 O -0.935 6.935 15 C -0.781 4.781 16 C 0.030 3.970 17 C -0.143 4.143 18 C 0.403 3.597 19 F -0.055 7.055 20 F -0.115 7.115 21 F -0.204 7.204 22 F -0.253 7.253 23 F -0.215 7.215 24 C -0.146 4.146 25 C 0.043 3.957 26 C 0.070 3.930 27 F -0.105 7.105 28 C -0.125 4.125 29 H 0.244 0.756 30 H 0.155 0.845 31 H 0.181 0.819 32 H 0.193 0.807 33 H 0.237 0.763 34 H 0.220 0.780 35 H 0.220 0.780 36 H 0.241 0.759 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.092 11.115 -2.593 14.592 hybrid contribution -1.900 -2.463 0.173 3.116 sum 7.192 8.651 -2.421 11.508 Atomic orbital electron populations 1.86569 1.16589 1.81813 1.50461 1.25112 0.85515 1.10761 0.97802 0.85408 0.80314 0.74349 0.80800 1.16025 1.17228 1.20736 1.20632 0.95442 0.93492 0.96631 1.21377 0.97547 1.01834 0.92451 1.21526 0.96460 0.90526 0.99109 1.18340 1.06002 0.92554 0.86825 1.85797 1.60595 1.78017 1.35608 1.02447 0.72420 0.73470 0.73292 1.93685 1.71308 1.80797 1.46887 1.93677 1.77051 1.37535 1.85199 1.32017 1.18558 1.14279 1.13259 1.21632 0.85999 1.00029 0.89325 1.22163 1.03997 0.85517 1.02653 1.27715 0.63157 0.68957 0.99892 1.99966 1.94088 1.27703 1.83780 1.99950 1.99194 1.84181 1.28150 1.99912 1.95921 1.36399 1.88119 1.99928 1.94840 1.90098 1.40433 1.99931 1.80764 1.53150 1.87704 1.22282 0.87710 1.06588 0.98052 1.21622 0.95998 0.87077 0.91028 1.17964 1.00348 0.78445 0.96223 1.91600 1.92448 1.31034 1.95404 1.21182 1.00315 0.94845 0.96161 0.75615 0.84513 0.81934 0.80732 0.76277 0.77989 0.78004 0.75916 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 679. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 5.47 12.83 -148.98 -1.91 3.56 16 2 C -0.08 0.98 2.80 71.23 0.20 1.18 16 3 Si 0.97 -10.26 25.14 68.60 1.72 -8.53 16 4 H -0.24 2.79 7.03 99.48 0.70 3.49 16 5 H -0.25 2.45 7.11 99.48 0.71 3.16 16 6 H -0.28 1.27 7.11 99.48 0.71 1.98 16 7 C -0.06 0.72 5.35 -19.85 -0.11 0.61 16 8 C -0.11 1.40 8.66 22.26 0.19 1.60 16 9 C -0.06 0.58 9.19 22.36 0.21 0.78 16 10 C 0.01 -0.04 4.80 22.53 0.11 0.07 16 11 O -0.64 4.09 10.02 -62.25 -0.62 3.47 16 12 S 2.69 -16.87 5.42 -56.49 -0.31 -17.17 16 13 O -0.93 0.63 17.27 -118.78 -2.05 -1.42 16 14 O -0.94 4.57 15.61 -118.78 -1.85 2.72 16 15 C -0.70 6.49 4.36 22.27 0.10 6.59 16 16 C 0.05 -0.52 7.75 22.27 0.17 -0.35 16 17 C -0.13 0.81 8.62 22.27 0.19 1.00 16 18 C 0.41 -0.11 4.82 22.27 0.11 0.00 16 19 F -0.06 -1.13 16.67 44.97 0.75 -0.38 16 20 F -0.12 -1.39 15.31 44.97 0.69 -0.71 16 21 F -0.20 -3.03 15.31 44.97 0.69 -2.34 16 22 F -0.25 -3.88 15.31 44.97 0.69 -3.19 16 23 F -0.22 -2.89 15.31 44.97 0.69 -2.20 16 24 C -0.13 0.80 8.62 22.27 0.19 0.99 16 25 C 0.06 -0.64 9.52 22.27 0.21 -0.42 16 26 C 0.09 -0.76 6.16 22.45 0.14 -0.62 16 27 F -0.13 0.83 14.91 44.97 0.67 1.50 16 28 C -0.11 1.14 9.66 22.30 0.22 1.35 16 29 H 0.39 -6.66 8.70 -74.06 -0.64 -7.30 16 30 H 0.14 -1.87 7.96 -2.39 -0.02 -1.88 16 31 H 0.16 -2.55 4.85 -2.91 -0.01 -2.57 16 32 H 0.18 -2.42 8.06 -2.91 -0.02 -2.44 16 33 H 0.22 -3.84 7.62 -2.91 -0.02 -3.86 16 34 H 0.20 -1.66 7.40 -2.91 -0.02 -1.69 16 35 H 0.20 -1.62 7.40 -2.91 -0.02 -1.65 16 36 H 0.22 -3.66 7.62 -2.91 -0.02 -3.69 16 37 H 0.17 -2.07 8.06 -2.91 -0.02 -2.10 16 Total: 0.00 -32.84 358.36 2.38 -30.46 By element: Atomic # 1 Polarization: -19.85 SS G_CDS: 1.30 Total: -18.54 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 1.93 Total: 12.77 kcal Atomic # 8 Polarization: 14.76 SS G_CDS: -6.44 Total: 8.32 kcal Atomic # 9 Polarization: -11.48 SS G_CDS: 4.17 Total: -7.31 kcal Atomic # 14 Polarization: -10.26 SS G_CDS: 1.72 Total: -8.53 kcal Atomic # 16 Polarization: -16.87 SS G_CDS: -0.31 Total: -17.17 kcal Total: -32.84 2.38 -30.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7834718_8643202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 299.312 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 266.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 268.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.96 seconds