Wall clock time and date at job start Tue Mar 9 2021 13:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47216 * 2 1 4 4 C 1.50692 * 109.47411 * 120.00508 * 2 1 3 5 5 C 1.33392 * 122.54173 * 74.99342 * 4 2 1 6 6 S 1.76203 * 125.20183 * 0.02562 * 5 4 2 7 7 O 1.42102 * 106.40198 * 66.17684 * 6 5 4 8 8 O 1.42105 * 106.40340 * 293.25757 * 6 5 4 9 9 N 1.65593 * 107.21950 * 179.71578 * 6 5 4 10 10 C 1.46506 * 120.00064 * 64.99919 * 9 6 5 11 11 H 1.09001 * 109.47060 * 335.00491 * 10 9 6 12 12 C 1.53005 * 109.46831 * 94.99894 * 10 9 6 13 13 C 1.52996 * 109.46543 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47571 * 299.99799 * 13 12 10 15 15 H 1.09001 * 109.46962 * 300.00479 * 14 13 12 16 16 C 1.52996 * 109.47245 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47084 * 65.00516 * 16 14 13 18 18 C 1.53000 * 109.46632 * 60.00168 * 14 13 12 19 19 C 1.52996 * 109.47518 * 300.00318 * 18 14 13 20 20 S 1.75877 * 109.59605 * 179.75501 * 5 4 2 21 21 C 1.75883 * 90.97149 * 0.22733 * 20 5 4 22 22 C 1.33387 * 109.59400 * 0.02562 * 21 20 5 23 23 H 0.96697 * 113.99646 * 59.99240 * 1 2 3 24 24 H 1.09006 * 109.46602 * 240.00196 * 2 1 3 25 25 H 1.48499 * 109.99678 * 60.00541 * 3 2 1 26 26 H 1.48499 * 109.99747 * 181.32051 * 3 2 1 27 27 H 0.97004 * 120.00379 * 245.00318 * 9 6 5 28 28 H 1.08992 * 109.47061 * 300.00078 * 12 10 9 29 29 H 1.09001 * 109.46812 * 60.00445 * 12 10 9 30 30 H 1.09004 * 109.46785 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47364 * 60.00587 * 13 12 10 32 32 H 1.08998 * 109.47140 * 185.00048 * 16 14 13 33 33 H 1.08997 * 109.47293 * 305.00474 * 16 14 13 34 34 H 0.96698 * 114.00189 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.46724 * 179.97438 * 18 14 13 36 36 H 1.09001 * 109.47194 * 60.00452 * 18 14 13 37 37 H 1.09001 * 109.46997 * 300.00254 * 19 18 14 38 38 H 1.08996 * 109.47452 * 179.97438 * 19 18 14 39 39 H 1.08004 * 125.20887 * 179.97438 * 21 20 5 40 40 H 1.08000 * 122.54672 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.8961 -2.0379 1.3570 6 16 1.2761 -3.1577 0.1461 7 8 2.1519 -3.0678 -0.9693 8 8 -0.1220 -2.9194 0.0577 9 7 1.4522 -4.6868 0.7568 10 6 0.6992 -5.0917 1.9465 11 1 0.4466 -4.2093 2.5343 12 6 -0.5854 -5.8044 1.5188 13 6 -1.3721 -6.2267 2.7613 14 6 -0.5197 -7.1753 3.6067 15 1 -0.2672 -8.0580 3.0191 16 6 -1.3067 -7.5980 4.8488 17 8 -2.4458 -8.3647 4.4529 18 6 0.7648 -6.4626 4.0342 19 6 1.5515 -6.0403 2.7918 20 16 2.5702 -2.4999 2.9144 21 6 2.8646 -0.8141 3.3207 22 6 2.4609 -0.0348 2.3163 23 1 -0.3932 0.4418 -0.7650 24 1 1.7923 -0.5138 -0.8901 25 1 1.5616 2.4678 1.2086 26 1 3.5347 1.7702 -0.0322 27 1 2.0540 -5.3146 0.3268 28 1 -1.1928 -5.1285 0.9170 29 1 -0.3328 -6.6869 0.9310 30 1 -2.2870 -6.7348 2.4567 31 1 -1.6247 -5.3440 3.3488 32 1 -0.6692 -8.2016 5.4948 33 1 -1.6360 -6.7108 5.3897 34 1 -2.9925 -8.6667 5.1911 35 1 1.3718 -7.1382 4.6369 36 1 0.5123 -5.5799 4.6218 37 1 1.8041 -6.9229 2.2043 38 1 2.4664 -5.5321 3.0964 39 1 3.3043 -0.4635 4.2428 40 1 2.5445 1.0415 2.3462 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_7866976_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:21 Heat of formation + Delta-G solvation = -123.158836 kcal Electronic energy + Delta-G solvation = -25832.496923 eV Core-core repulsion = 22060.366414 eV Total energy + Delta-G solvation = -3772.130509 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.31887 -39.96431 -38.10725 -37.67936 -37.18507 -36.74297 -35.30795 -31.85060 -31.56777 -30.86762 -28.10052 -26.03982 -24.25404 -23.79083 -22.40124 -21.81645 -20.90606 -19.75110 -19.62535 -18.55757 -18.35421 -18.01135 -17.52859 -17.34979 -16.35664 -16.09911 -16.05032 -15.65932 -15.55738 -15.29881 -14.75721 -14.63853 -14.44849 -14.25549 -14.16185 -13.93045 -13.75661 -13.53841 -13.25309 -13.01335 -12.91979 -12.64568 -12.61888 -12.51647 -12.33312 -12.24422 -12.18587 -11.83914 -11.71108 -11.54175 -11.26524 -10.90862 -10.55698 -10.47676 -10.42476 -9.72810 -5.08211 -0.71191 -0.65438 0.16352 0.51350 1.12398 1.14631 1.58263 1.84567 1.92309 2.62838 3.15856 3.18855 3.48853 3.57969 3.67493 3.74178 3.80183 3.85197 3.89133 3.96424 4.12193 4.16669 4.19125 4.30207 4.36984 4.41193 4.49614 4.55401 4.58075 4.63499 4.76566 4.78401 4.90182 4.93714 4.99668 5.06975 5.16382 5.31244 5.37884 5.45431 5.83774 6.56257 6.67092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.104 4.104 3 Si 0.710 3.290 4 C 0.051 3.949 5 C -0.767 4.767 6 S 2.714 3.286 7 O -0.951 6.951 8 O -0.921 6.921 9 N -1.115 6.115 10 C 0.148 3.852 11 H 0.085 0.915 12 C -0.138 4.138 13 C -0.110 4.110 14 C -0.091 4.091 15 H 0.081 0.919 16 C 0.079 3.921 17 O -0.573 6.573 18 C -0.112 4.112 19 C -0.125 4.125 20 S 0.210 5.790 21 C -0.164 4.164 22 C -0.163 4.163 23 H 0.388 0.612 24 H 0.084 0.916 25 H -0.245 1.245 26 H -0.250 1.250 27 H 0.422 0.578 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.380 0.620 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.180 0.820 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 0.224 3.478 3.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.216 4.216 3 Si 0.609 3.391 4 C 0.034 3.966 5 C -0.966 4.966 6 S 2.798 3.202 7 O -0.942 6.942 8 O -0.911 6.911 9 N -0.876 5.876 10 C 0.041 3.959 11 H 0.103 0.897 12 C -0.177 4.177 13 C -0.148 4.148 14 C -0.110 4.110 15 H 0.099 0.901 16 C 0.001 3.999 17 O -0.378 6.378 18 C -0.151 4.151 19 C -0.164 4.164 20 S 0.476 5.524 21 C -0.301 4.301 22 C -0.193 4.193 23 H 0.237 0.763 24 H 0.102 0.898 25 H -0.169 1.169 26 H -0.174 1.174 27 H 0.257 0.743 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.227 0.773 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.197 0.803 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.224 -0.384 3.953 4.552 hybrid contribution 0.332 0.663 0.669 0.999 sum 2.556 0.279 4.621 5.288 Atomic orbital electron populations 1.86602 1.15070 1.82043 1.49807 1.24926 0.87600 1.12882 0.96235 0.94674 0.80908 0.76383 0.87155 1.17927 0.93446 0.90609 0.94612 1.35793 1.25688 1.14387 1.20713 1.01677 0.74420 0.71755 0.72374 1.93624 1.67688 1.85848 1.46998 1.93662 1.29033 1.83965 1.84404 1.55718 1.58530 1.30720 1.42606 1.20991 0.91686 0.98626 0.84560 0.89745 1.22089 0.95658 1.01302 0.98670 1.21514 0.98711 0.98884 0.95663 1.21216 0.94468 0.99104 0.96166 0.90089 1.22222 0.87347 0.94218 0.96127 1.86477 1.40071 1.73566 1.37713 1.21503 0.95672 1.00740 0.97167 1.21853 0.98283 0.99627 0.96600 1.84002 1.56149 1.05647 1.06601 1.26120 1.03617 0.96976 1.03408 1.20219 1.03952 1.01527 0.93595 0.76350 0.89796 1.16937 1.17387 0.74278 0.89985 0.90925 0.90407 0.91785 0.93655 0.93583 0.77274 0.90899 0.91267 0.90475 0.90848 0.80283 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.20 12.30 -35.88 -0.44 -1.65 16 2 C -0.10 -0.22 2.32 36.00 0.08 -0.14 16 3 Si 0.71 -0.40 30.43 -169.99 -5.17 -5.57 16 4 C 0.05 0.18 5.16 -106.25 -0.55 -0.37 16 5 C -0.77 -2.44 6.33 29.04 0.18 -2.25 16 6 S 2.71 9.75 4.99 -107.50 -0.54 9.21 16 7 O -0.95 -5.53 17.48 -57.17 -1.00 -6.53 16 8 O -0.92 -5.57 16.72 -59.41 -0.99 -6.56 16 9 N -1.12 -0.15 5.29 -4.89 -0.03 -0.18 16 10 C 0.15 -0.06 2.06 -67.93 -0.14 -0.20 16 11 H 0.08 -0.02 6.89 -51.93 -0.36 -0.38 16 12 C -0.14 -0.07 5.53 -26.73 -0.15 -0.22 16 13 C -0.11 -0.02 5.10 -26.73 -0.14 -0.16 16 14 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 15 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 16 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 17 O -0.57 -0.23 13.19 -35.23 -0.46 -0.70 16 18 C -0.11 0.27 5.20 -26.73 -0.14 0.13 16 19 C -0.12 0.28 5.45 -26.73 -0.15 0.14 16 20 S 0.21 0.04 21.57 -107.50 -2.32 -2.27 16 21 C -0.16 -0.03 11.23 29.04 0.33 0.29 16 22 C -0.16 -0.33 8.74 -41.21 -0.36 -0.69 16 23 H 0.39 -1.16 8.74 45.56 0.40 -0.76 16 24 H 0.08 0.14 7.23 -51.93 -0.38 -0.23 16 25 H -0.24 -0.32 6.86 56.52 0.39 0.06 16 26 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 27 H 0.42 -0.86 8.84 -34.47 -0.30 -1.17 16 28 H 0.08 0.18 7.64 -51.93 -0.40 -0.22 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.08 0.11 7.82 -51.93 -0.41 -0.30 16 31 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.38 -1.36 9.12 45.56 0.42 -0.94 16 35 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 37 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 39 H 0.18 -0.53 8.06 -52.48 -0.42 -0.95 16 40 H 0.15 0.12 5.57 -52.49 -0.29 -0.17 16 LS Contribution 345.09 15.07 5.20 5.20 Total: 0.00 -10.85 345.09 -11.52 -22.36 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: -4.76 Total: -9.87 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.01 Total: -3.44 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.03 Total: -0.18 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -2.90 Total: -15.43 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.17 Total: -5.57 kcal Atomic # 16 Polarization: 9.79 SS G_CDS: -2.86 Total: 6.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -10.85 -11.52 -22.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7866976_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.798 kcal (2) G-P(sol) polarization free energy of solvation -10.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds