Wall clock time and date at job start Tue Mar 9 2021 13:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47216 * 2 1 4 4 C 1.50692 * 109.47411 * 120.00508 * 2 1 3 5 5 C 1.33392 * 122.54173 * 74.99342 * 4 2 1 6 6 S 1.76203 * 125.20183 * 0.02562 * 5 4 2 7 7 O 1.42102 * 106.40198 * 66.17684 * 6 5 4 8 8 O 1.42105 * 106.40340 * 293.25757 * 6 5 4 9 9 N 1.65593 * 107.21950 * 179.71578 * 6 5 4 10 10 C 1.46506 * 120.00064 * 64.99919 * 9 6 5 11 11 H 1.09001 * 109.47060 * 335.00491 * 10 9 6 12 12 C 1.53005 * 109.46831 * 94.99894 * 10 9 6 13 13 C 1.52996 * 109.46543 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47571 * 299.99799 * 13 12 10 15 15 H 1.09001 * 109.46962 * 300.00479 * 14 13 12 16 16 C 1.52996 * 109.47245 * 180.02562 * 14 13 12 17 17 O 1.42902 * 109.47084 * 65.00516 * 16 14 13 18 18 C 1.53000 * 109.46632 * 60.00168 * 14 13 12 19 19 C 1.52996 * 109.47518 * 300.00318 * 18 14 13 20 20 S 1.75877 * 109.59605 * 179.75501 * 5 4 2 21 21 C 1.75883 * 90.97149 * 0.22733 * 20 5 4 22 22 C 1.33387 * 109.59400 * 0.02562 * 21 20 5 23 23 H 0.96697 * 113.99646 * 59.99240 * 1 2 3 24 24 H 1.09006 * 109.46602 * 240.00196 * 2 1 3 25 25 H 1.48499 * 109.99678 * 60.00541 * 3 2 1 26 26 H 1.48499 * 109.99747 * 181.32051 * 3 2 1 27 27 H 0.97004 * 120.00379 * 245.00318 * 9 6 5 28 28 H 1.08992 * 109.47061 * 300.00078 * 12 10 9 29 29 H 1.09001 * 109.46812 * 60.00445 * 12 10 9 30 30 H 1.09004 * 109.46785 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47364 * 60.00587 * 13 12 10 32 32 H 1.08998 * 109.47140 * 185.00048 * 16 14 13 33 33 H 1.08997 * 109.47293 * 305.00474 * 16 14 13 34 34 H 0.96698 * 114.00189 * 180.02562 * 17 16 14 35 35 H 1.09004 * 109.46724 * 179.97438 * 18 14 13 36 36 H 1.09001 * 109.47194 * 60.00452 * 18 14 13 37 37 H 1.09001 * 109.46997 * 300.00254 * 19 18 14 38 38 H 1.08996 * 109.47452 * 179.97438 * 19 18 14 39 39 H 1.08004 * 125.20887 * 179.97438 * 21 20 5 40 40 H 1.08000 * 122.54672 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.8961 -2.0379 1.3570 6 16 1.2761 -3.1577 0.1461 7 8 2.1519 -3.0678 -0.9693 8 8 -0.1220 -2.9194 0.0577 9 7 1.4522 -4.6868 0.7568 10 6 0.6992 -5.0917 1.9465 11 1 0.4466 -4.2093 2.5343 12 6 -0.5854 -5.8044 1.5188 13 6 -1.3721 -6.2267 2.7613 14 6 -0.5197 -7.1753 3.6067 15 1 -0.2672 -8.0580 3.0191 16 6 -1.3067 -7.5980 4.8488 17 8 -2.4458 -8.3647 4.4529 18 6 0.7648 -6.4626 4.0342 19 6 1.5515 -6.0403 2.7918 20 16 2.5702 -2.4999 2.9144 21 6 2.8646 -0.8141 3.3207 22 6 2.4609 -0.0348 2.3163 23 1 -0.3932 0.4418 -0.7650 24 1 1.7923 -0.5138 -0.8901 25 1 1.5616 2.4678 1.2086 26 1 3.5347 1.7702 -0.0322 27 1 2.0540 -5.3146 0.3268 28 1 -1.1928 -5.1285 0.9170 29 1 -0.3328 -6.6869 0.9310 30 1 -2.2870 -6.7348 2.4567 31 1 -1.6247 -5.3440 3.3488 32 1 -0.6692 -8.2016 5.4948 33 1 -1.6360 -6.7108 5.3897 34 1 -2.9925 -8.6667 5.1911 35 1 1.3718 -7.1382 4.6369 36 1 0.5123 -5.5799 4.6218 37 1 1.8041 -6.9229 2.2043 38 1 2.4664 -5.5321 3.0964 39 1 3.3043 -0.4635 4.2428 40 1 2.5445 1.0415 2.3462 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7866976_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:21 Heat of formation + Delta-G solvation = -129.960924 kcal Electronic energy + Delta-G solvation = -25832.791884 eV Core-core repulsion = 22060.366414 eV Total energy + Delta-G solvation = -3772.425469 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28312 -40.03290 -38.43420 -37.66509 -37.30714 -37.07842 -35.32271 -31.80220 -31.62936 -30.85086 -28.21608 -25.98854 -24.31756 -23.72398 -22.37172 -21.94591 -20.88894 -19.93157 -19.71704 -18.67286 -18.39285 -18.06163 -17.63523 -17.44283 -16.50212 -16.20059 -16.04577 -15.65862 -15.62994 -15.25999 -14.79356 -14.66093 -14.51952 -14.33517 -14.17690 -13.93119 -13.79246 -13.63844 -13.41694 -13.32298 -13.13176 -12.78501 -12.67132 -12.61632 -12.37249 -12.28705 -12.10309 -11.92507 -11.65635 -11.47380 -11.23367 -10.83518 -10.60199 -10.54383 -10.50788 -9.75684 -5.03791 -0.88986 -0.81712 0.08905 0.47346 1.04495 1.12177 1.60071 1.77633 1.83042 2.38746 3.17134 3.31210 3.39811 3.54588 3.70557 3.72571 3.76405 3.84512 3.91257 3.96096 4.13949 4.14839 4.28749 4.36579 4.42522 4.49283 4.51005 4.55088 4.70738 4.72528 4.73780 4.85437 4.86809 5.00438 5.12148 5.16755 5.18204 5.28526 5.40469 5.50150 5.88900 6.70564 6.91646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.132 4.132 3 Si 0.806 3.194 4 C 0.027 3.973 5 C -0.798 4.798 6 S 2.724 3.276 7 O -0.982 6.982 8 O -0.955 6.955 9 N -1.103 6.103 10 C 0.145 3.855 11 H 0.083 0.917 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.090 4.090 15 H 0.073 0.927 16 C 0.075 3.925 17 O -0.597 6.597 18 C -0.109 4.109 19 C -0.122 4.122 20 S 0.253 5.747 21 C -0.154 4.154 22 C -0.189 4.189 23 H 0.406 0.594 24 H 0.078 0.922 25 H -0.268 1.268 26 H -0.278 1.278 27 H 0.432 0.568 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.395 0.605 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.214 0.786 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 0.135 5.175 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.242 4.242 3 Si 0.707 3.293 4 C 0.010 3.990 5 C -0.999 4.999 6 S 2.810 3.190 7 O -0.972 6.972 8 O -0.945 6.945 9 N -0.867 5.867 10 C 0.039 3.961 11 H 0.101 0.899 12 C -0.178 4.178 13 C -0.145 4.145 14 C -0.108 4.108 15 H 0.091 0.909 16 C -0.002 4.002 17 O -0.405 6.405 18 C -0.148 4.148 19 C -0.161 4.161 20 S 0.520 5.480 21 C -0.292 4.292 22 C -0.219 4.219 23 H 0.257 0.743 24 H 0.096 0.904 25 H -0.194 1.194 26 H -0.204 1.204 27 H 0.270 0.730 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.244 0.756 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.334 -0.518 5.614 6.550 hybrid contribution -0.047 0.619 0.210 0.656 sum 3.288 0.101 5.824 6.689 Atomic orbital electron populations 1.86549 1.15472 1.82744 1.51193 1.25414 0.87574 1.15379 0.95797 0.93558 0.77694 0.72853 0.85239 1.18348 0.93829 0.91159 0.95656 1.35683 1.27359 1.14406 1.22414 1.00966 0.73433 0.72299 0.72257 1.93571 1.68075 1.86562 1.49018 1.93616 1.30922 1.84783 1.85158 1.55439 1.58752 1.29610 1.42908 1.21112 0.91603 0.98994 0.84392 0.89896 1.22073 0.95994 1.01055 0.98700 1.21465 0.98301 0.99038 0.95710 1.21215 0.95059 0.98522 0.96050 0.90869 1.22317 0.87197 0.94595 0.96109 1.86439 1.40878 1.73902 1.39305 1.21512 0.94908 1.01169 0.97177 1.21883 0.98342 0.99487 0.96402 1.83719 1.54683 1.05378 1.04258 1.26626 1.01773 0.96837 1.03916 1.20365 1.05343 1.02196 0.93949 0.74266 0.90417 1.19399 1.20438 0.72958 0.92266 0.90495 0.92103 0.91824 0.92338 0.92967 0.75583 0.89326 0.90600 0.89673 0.89404 0.76950 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.45 12.30 -148.36 -1.82 -5.28 16 2 C -0.13 -0.76 2.32 71.23 0.17 -0.59 16 3 Si 0.81 -0.56 30.43 68.60 2.09 1.53 16 4 C 0.03 0.22 5.16 -20.92 -0.11 0.11 16 5 C -0.80 -5.80 6.33 66.72 0.42 -5.38 16 6 S 2.72 24.43 4.99 -56.49 -0.28 24.15 16 7 O -0.98 -13.50 17.48 -128.00 -2.24 -15.74 16 8 O -0.96 -14.01 16.72 -125.86 -2.10 -16.11 16 9 N -1.10 -1.15 5.29 -169.37 -0.90 -2.04 16 10 C 0.15 -0.08 2.06 44.99 0.09 0.02 16 11 H 0.08 -0.01 6.89 -2.39 -0.02 -0.03 16 12 C -0.14 -0.31 5.53 30.59 0.17 -0.14 16 13 C -0.11 -0.15 5.10 30.59 0.16 0.01 16 14 C -0.09 0.19 2.43 -10.79 -0.03 0.16 16 15 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 17 O -0.60 -0.57 13.19 -148.98 -1.97 -2.53 16 18 C -0.11 0.68 5.20 30.59 0.16 0.84 16 19 C -0.12 0.70 5.45 30.59 0.17 0.87 16 20 S 0.25 -0.12 21.57 -56.49 -1.22 -1.34 16 21 C -0.15 0.14 11.23 66.72 0.75 0.89 16 22 C -0.19 -0.76 8.74 21.22 0.19 -0.57 16 23 H 0.41 -1.79 8.74 -74.06 -0.65 -2.44 16 24 H 0.08 0.45 7.23 -2.38 -0.02 0.43 16 25 H -0.27 -0.76 6.86 99.48 0.68 -0.07 16 26 H -0.28 -1.03 7.11 99.48 0.71 -0.32 16 27 H 0.43 -1.57 8.84 -96.74 -0.85 -2.43 16 28 H 0.06 0.41 7.64 -2.39 -0.02 0.39 16 29 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.06 0.28 7.82 -2.38 -0.02 0.26 16 31 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 32 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.39 -2.81 9.12 -74.06 -0.68 -3.48 16 35 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.21 -1.83 8.06 -2.91 -0.02 -1.86 16 40 H 0.16 0.26 5.57 -2.91 -0.02 0.25 16 Total: 0.00 -26.46 345.09 -6.92 -33.38 By element: Atomic # 1 Polarization: -11.43 SS G_CDS: -1.07 Total: -12.51 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 2.59 Total: -3.52 kcal Atomic # 7 Polarization: -1.15 SS G_CDS: -0.90 Total: -2.04 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -8.13 Total: -39.66 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.09 Total: 1.53 kcal Atomic # 16 Polarization: 24.31 SS G_CDS: -1.50 Total: 22.81 kcal Total: -26.46 -6.92 -33.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7866976_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.578 kcal (2) G-P(sol) polarization free energy of solvation -26.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds