Wall clock time and date at job start Tue Mar 9 2021 13:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47115 * 2 1 4 4 C 1.50704 * 109.47129 * 119.99729 * 2 1 3 5 5 C 1.33393 * 125.19863 * 38.87697 * 4 2 1 6 6 S 1.76193 * 122.54411 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40124 * 278.92982 * 6 5 4 8 8 O 1.42101 * 106.40160 * 51.84408 * 6 5 4 9 9 N 1.65600 * 107.22108 * 165.38579 * 6 5 4 10 10 C 1.46495 * 119.99918 * 66.80794 * 9 6 5 11 11 H 1.09005 * 109.47186 * 336.14497 * 10 9 6 12 12 C 1.53000 * 109.47144 * 96.14222 * 10 9 6 13 13 C 1.53001 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47187 * 300.00256 * 13 12 10 15 15 H 1.08991 * 109.47111 * 300.00087 * 14 13 12 16 16 C 1.53005 * 109.47273 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.46468 * 65.00093 * 16 14 13 18 18 C 1.53007 * 109.46890 * 60.00059 * 14 13 12 19 19 C 1.52994 * 109.47184 * 216.14492 * 10 9 6 20 20 C 1.38428 * 114.91637 * 179.97438 * 5 4 2 21 21 C 1.33383 * 114.92139 * 0.02562 * 20 5 4 22 22 S 1.75879 * 125.20455 * 218.83728 * 4 2 1 23 23 H 0.96703 * 113.99833 * 64.98378 * 1 2 3 24 24 H 1.09000 * 109.47110 * 239.99723 * 2 1 3 25 25 H 1.48504 * 110.00196 * 60.00036 * 3 2 1 26 26 H 1.48497 * 109.99858 * 181.31847 * 3 2 1 27 27 H 0.96999 * 119.99555 * 246.80864 * 9 6 5 28 28 H 1.08992 * 109.47402 * 300.00380 * 12 10 9 29 29 H 1.09005 * 109.46854 * 60.00072 * 12 10 9 30 30 H 1.08996 * 109.47175 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47237 * 59.99948 * 13 12 10 32 32 H 1.08997 * 109.46952 * 185.00160 * 16 14 13 33 33 H 1.09002 * 109.46806 * 305.00505 * 16 14 13 34 34 H 0.96709 * 113.99587 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.46619 * 180.02562 * 18 14 13 36 36 H 1.08991 * 109.47221 * 60.00095 * 18 14 13 37 37 H 1.08997 * 109.47394 * 300.00196 * 19 10 9 38 38 H 1.08996 * 109.47518 * 60.00021 * 19 10 9 39 39 H 1.07999 * 122.53817 * 180.02562 * 20 5 4 40 40 H 1.08007 * 125.20209 * 179.73560 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.3876 -1.8067 1.7613 6 16 -0.0321 -2.5897 1.0715 7 8 -1.1583 -1.8547 1.5303 8 8 0.2528 -2.7963 -0.3052 9 7 -0.1442 -4.0932 1.7566 10 6 -0.4412 -4.2270 3.1849 11 1 -0.1447 -3.3158 3.7046 12 6 -1.9419 -4.4568 3.3744 13 6 -2.2520 -4.5972 4.8660 14 6 -1.4777 -5.7863 5.4383 15 1 -1.7742 -6.6971 4.9183 16 6 -1.7873 -5.9263 6.9301 17 8 -3.1671 -6.2561 7.1011 18 6 0.0231 -5.5563 5.2488 19 6 0.3332 -5.4157 3.7576 20 6 2.0233 -2.2827 2.8951 21 6 3.0829 -1.5726 3.2853 22 16 3.3247 -0.2212 2.1858 23 1 -0.3933 0.3736 -0.8006 24 1 1.7924 -0.5139 -0.8900 25 1 1.5615 2.4680 1.2085 26 1 3.5346 1.7703 -0.0321 27 1 -0.0132 -4.8852 1.2121 28 1 -2.4936 -3.6100 2.9663 29 1 -2.2384 -5.3680 2.8547 30 1 -3.3211 -4.7614 5.0010 31 1 -1.9554 -3.6864 5.3861 32 1 -1.1693 -6.7162 7.3568 33 1 -1.5735 -4.9845 7.4355 34 1 -3.4349 -6.3609 8.0245 35 1 0.5747 -6.4037 5.6560 36 1 0.3196 -4.6455 5.7688 37 1 0.0368 -6.3269 3.2380 38 1 1.4023 -5.2520 3.6227 39 1 1.6869 -3.1624 3.4237 40 1 3.6962 -1.7918 4.1469 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_7866976_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:28 Heat of formation + Delta-G solvation = -123.878920 kcal Electronic energy + Delta-G solvation = -25985.526355 eV Core-core repulsion = 22213.364621 eV Total energy + Delta-G solvation = -3772.161734 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.34936 -39.52970 -38.02011 -37.70422 -37.52317 -36.49347 -35.24055 -32.01839 -31.81713 -30.81691 -27.53681 -26.02199 -24.45330 -23.75965 -22.33864 -21.69347 -21.10555 -20.04778 -18.92977 -18.54582 -18.32388 -17.97006 -17.57470 -17.41846 -16.41183 -16.08005 -15.94113 -15.73659 -15.33895 -15.25426 -14.98476 -14.67213 -14.43172 -14.15608 -14.12342 -13.86672 -13.75853 -13.45097 -13.22832 -12.95094 -12.79995 -12.70463 -12.60070 -12.53869 -12.26126 -12.18853 -12.09730 -11.76714 -11.63766 -11.51599 -11.23786 -10.89886 -10.85522 -10.45483 -10.09641 -9.79891 -5.31335 -0.54194 -0.50659 0.30355 0.63367 0.97932 1.14633 1.45928 1.78809 2.08150 2.87869 3.02094 3.16057 3.45336 3.52630 3.63448 3.72448 3.88402 3.89842 3.94231 4.08588 4.15726 4.20362 4.23954 4.32479 4.39480 4.41136 4.49893 4.56640 4.58716 4.66687 4.76922 4.78012 4.91284 4.99876 5.04416 5.10032 5.19206 5.33451 5.39192 5.46624 5.95368 6.38704 6.67052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.079 4.079 3 Si 0.695 3.305 4 C -0.055 4.055 5 C -0.659 4.659 6 S 2.721 3.279 7 O -0.932 6.932 8 O -0.954 6.954 9 N -1.119 6.119 10 C 0.147 3.853 11 H 0.086 0.914 12 C -0.138 4.138 13 C -0.110 4.110 14 C -0.091 4.091 15 H 0.081 0.919 16 C 0.079 3.921 17 O -0.573 6.573 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.207 4.207 22 S 0.141 5.859 23 H 0.401 0.599 24 H 0.109 0.891 25 H -0.235 1.235 26 H -0.235 1.235 27 H 0.419 0.581 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.380 0.620 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -0.511 1.559 3.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.190 4.190 3 Si 0.592 3.408 4 C -0.175 4.175 5 C -0.756 4.756 6 S 2.806 3.194 7 O -0.921 6.921 8 O -0.945 6.945 9 N -0.878 5.878 10 C 0.041 3.959 11 H 0.104 0.896 12 C -0.177 4.177 13 C -0.148 4.148 14 C -0.109 4.109 15 H 0.099 0.901 16 C 0.001 3.999 17 O -0.378 6.378 18 C -0.152 4.152 19 C -0.166 4.166 20 C -0.119 4.119 21 C -0.343 4.343 22 S 0.404 5.596 23 H 0.252 0.748 24 H 0.126 0.874 25 H -0.158 1.158 26 H -0.159 1.159 27 H 0.254 0.746 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.227 0.773 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.256 1.588 1.363 4.743 hybrid contribution -0.105 -2.130 1.157 2.427 sum 4.152 -0.542 2.521 4.887 Atomic orbital electron populations 1.86389 1.15783 1.86700 1.46503 1.24625 0.86988 1.11737 0.95668 0.94344 0.81344 0.76843 0.88282 1.23616 0.98689 0.96155 0.99076 1.29958 1.25691 1.09953 1.09993 1.01466 0.73440 0.71759 0.72762 1.93601 1.46534 1.70297 1.81690 1.93560 1.85559 1.85120 1.30223 1.55816 1.87816 1.25534 1.18650 1.20973 0.96079 0.99620 0.79269 0.89565 1.22084 0.94947 1.03546 0.97147 1.21516 1.01245 0.97493 0.94545 1.21215 0.94967 1.00076 0.94685 0.90094 1.22227 0.82527 0.98698 0.96475 1.86480 1.26123 1.93435 1.31778 1.21506 0.95306 1.02607 0.95735 1.21884 1.00169 0.98496 0.96087 1.19887 0.95536 1.01434 0.95090 1.25899 1.03556 0.99942 1.04881 1.84464 1.26827 1.28511 1.19810 0.74842 0.87397 1.15838 1.15858 0.74626 0.90058 0.91021 0.90457 0.91817 0.93670 0.93599 0.77278 0.90951 0.91354 0.90463 0.90857 0.82735 0.80578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.09 9.48 -60.32 -0.57 -1.66 16 2 C -0.08 -0.11 2.35 36.01 0.08 -0.02 16 3 Si 0.69 -0.53 31.27 -169.99 -5.32 -5.84 16 4 C -0.06 -0.18 5.77 -36.00 -0.21 -0.39 16 5 C -0.66 -2.15 5.72 -41.20 -0.24 -2.39 16 6 S 2.72 10.04 4.12 -107.50 -0.44 9.59 16 7 O -0.93 -6.08 16.27 -64.95 -1.06 -7.13 16 8 O -0.95 -5.36 17.05 -62.47 -1.06 -6.43 16 9 N -1.12 -0.23 5.23 -4.89 -0.03 -0.25 16 10 C 0.15 -0.07 1.52 -67.94 -0.10 -0.17 16 11 H 0.09 -0.05 6.24 -51.93 -0.32 -0.37 16 12 C -0.14 -0.08 5.53 -26.73 -0.15 -0.23 16 13 C -0.11 -0.03 5.10 -26.73 -0.14 -0.16 16 14 C -0.09 0.08 2.43 -90.61 -0.22 -0.14 16 15 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 16 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 17 O -0.57 -0.27 13.19 -35.23 -0.46 -0.73 16 18 C -0.11 0.28 5.20 -26.75 -0.14 0.14 16 19 C -0.13 0.31 5.22 -26.76 -0.14 0.17 16 20 C -0.09 -0.10 9.04 -41.21 -0.37 -0.47 16 21 C -0.21 -0.10 11.23 29.04 0.33 0.23 16 22 S 0.14 0.25 20.88 -107.50 -2.24 -1.99 16 23 H 0.40 -1.35 8.86 45.56 0.40 -0.95 16 24 H 0.11 -0.03 7.96 -51.93 -0.41 -0.45 16 25 H -0.24 -0.53 7.11 56.52 0.40 -0.12 16 26 H -0.23 -0.10 7.11 56.52 0.40 0.30 16 27 H 0.42 -0.75 8.85 -34.47 -0.30 -1.05 16 28 H 0.08 0.19 7.77 -51.93 -0.40 -0.22 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.08 0.12 7.82 -51.93 -0.41 -0.29 16 31 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 34 H 0.38 -1.34 9.12 45.56 0.42 -0.93 16 35 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 37 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.07 -0.25 7.36 -51.93 -0.38 -0.63 16 39 H 0.16 -0.23 4.55 -52.49 -0.24 -0.47 16 40 H 0.18 -0.43 8.06 -52.48 -0.42 -0.86 16 LS Contribution 338.96 15.07 5.11 5.11 Total: 0.00 -11.04 338.96 -11.79 -22.83 By element: Atomic # 1 Polarization: -5.55 SS G_CDS: -4.66 Total: -10.21 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.05 Total: -3.28 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -0.03 Total: -0.25 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -3.16 Total: -15.95 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.32 Total: -5.84 kcal Atomic # 16 Polarization: 10.29 SS G_CDS: -2.69 Total: 7.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -11.04 -11.79 -22.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7866976_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.052 kcal (2) G-P(sol) polarization free energy of solvation -11.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds