Wall clock time and date at job start Tue Mar 9 2021 13:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47115 * 2 1 4 4 C 1.50704 * 109.47129 * 119.99729 * 2 1 3 5 5 C 1.33393 * 125.19863 * 38.87697 * 4 2 1 6 6 S 1.76193 * 122.54411 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40124 * 278.92982 * 6 5 4 8 8 O 1.42101 * 106.40160 * 51.84408 * 6 5 4 9 9 N 1.65600 * 107.22108 * 165.38579 * 6 5 4 10 10 C 1.46495 * 119.99918 * 66.80794 * 9 6 5 11 11 H 1.09005 * 109.47186 * 336.14497 * 10 9 6 12 12 C 1.53000 * 109.47144 * 96.14222 * 10 9 6 13 13 C 1.53001 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47187 * 300.00256 * 13 12 10 15 15 H 1.08991 * 109.47111 * 300.00087 * 14 13 12 16 16 C 1.53005 * 109.47273 * 179.97438 * 14 13 12 17 17 O 1.42898 * 109.46468 * 65.00093 * 16 14 13 18 18 C 1.53007 * 109.46890 * 60.00059 * 14 13 12 19 19 C 1.52994 * 109.47184 * 216.14492 * 10 9 6 20 20 C 1.38428 * 114.91637 * 179.97438 * 5 4 2 21 21 C 1.33383 * 114.92139 * 0.02562 * 20 5 4 22 22 S 1.75879 * 125.20455 * 218.83728 * 4 2 1 23 23 H 0.96703 * 113.99833 * 64.98378 * 1 2 3 24 24 H 1.09000 * 109.47110 * 239.99723 * 2 1 3 25 25 H 1.48504 * 110.00196 * 60.00036 * 3 2 1 26 26 H 1.48497 * 109.99858 * 181.31847 * 3 2 1 27 27 H 0.96999 * 119.99555 * 246.80864 * 9 6 5 28 28 H 1.08992 * 109.47402 * 300.00380 * 12 10 9 29 29 H 1.09005 * 109.46854 * 60.00072 * 12 10 9 30 30 H 1.08996 * 109.47175 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47237 * 59.99948 * 13 12 10 32 32 H 1.08997 * 109.46952 * 185.00160 * 16 14 13 33 33 H 1.09002 * 109.46806 * 305.00505 * 16 14 13 34 34 H 0.96709 * 113.99587 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.46619 * 180.02562 * 18 14 13 36 36 H 1.08991 * 109.47221 * 60.00095 * 18 14 13 37 37 H 1.08997 * 109.47394 * 300.00196 * 19 10 9 38 38 H 1.08996 * 109.47518 * 60.00021 * 19 10 9 39 39 H 1.07999 * 122.53817 * 180.02562 * 20 5 4 40 40 H 1.08007 * 125.20209 * 179.73560 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.3876 -1.8067 1.7613 6 16 -0.0321 -2.5897 1.0715 7 8 -1.1583 -1.8547 1.5303 8 8 0.2528 -2.7963 -0.3052 9 7 -0.1442 -4.0932 1.7566 10 6 -0.4412 -4.2270 3.1849 11 1 -0.1447 -3.3158 3.7046 12 6 -1.9419 -4.4568 3.3744 13 6 -2.2520 -4.5972 4.8660 14 6 -1.4777 -5.7863 5.4383 15 1 -1.7742 -6.6971 4.9183 16 6 -1.7873 -5.9263 6.9301 17 8 -3.1671 -6.2561 7.1011 18 6 0.0231 -5.5563 5.2488 19 6 0.3332 -5.4157 3.7576 20 6 2.0233 -2.2827 2.8951 21 6 3.0829 -1.5726 3.2853 22 16 3.3247 -0.2212 2.1858 23 1 -0.3933 0.3736 -0.8006 24 1 1.7924 -0.5139 -0.8900 25 1 1.5615 2.4680 1.2085 26 1 3.5346 1.7703 -0.0321 27 1 -0.0132 -4.8852 1.2121 28 1 -2.4936 -3.6100 2.9663 29 1 -2.2384 -5.3680 2.8547 30 1 -3.3211 -4.7614 5.0010 31 1 -1.9554 -3.6864 5.3861 32 1 -1.1693 -6.7162 7.3568 33 1 -1.5735 -4.9845 7.4355 34 1 -3.4349 -6.3609 8.0245 35 1 0.5747 -6.4037 5.6560 36 1 0.3196 -4.6455 5.7688 37 1 0.0368 -6.3269 3.2380 38 1 1.4023 -5.2520 3.6227 39 1 1.6869 -3.1624 3.4237 40 1 3.6962 -1.7918 4.1469 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_7866976_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:27 Heat of formation + Delta-G solvation = -129.530421 kcal Electronic energy + Delta-G solvation = -25985.771423 eV Core-core repulsion = 22213.364621 eV Total energy + Delta-G solvation = -3772.406802 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29889 -39.60353 -38.25468 -37.84281 -37.53830 -36.84467 -35.25003 -32.07768 -31.75596 -30.79427 -27.62323 -25.96349 -24.53182 -23.68292 -22.29456 -21.81068 -21.07497 -20.18524 -19.03681 -18.63230 -18.34173 -18.04271 -17.70859 -17.51654 -16.49331 -16.07288 -16.00936 -15.77339 -15.36241 -15.31921 -14.96992 -14.64732 -14.50293 -14.21766 -14.13968 -13.84734 -13.80830 -13.53561 -13.24289 -13.14657 -13.06214 -12.99085 -12.70844 -12.61465 -12.24988 -12.17802 -12.08754 -11.89894 -11.58642 -11.45094 -11.20208 -10.91297 -10.82014 -10.47872 -10.20977 -9.86635 -5.26577 -0.76577 -0.63288 0.19051 0.56872 0.96246 1.09088 1.48060 1.78527 1.94368 2.64956 3.00992 3.32815 3.43584 3.54082 3.59619 3.74522 3.89286 3.95754 3.98177 4.07753 4.18203 4.22643 4.32617 4.39513 4.44411 4.50840 4.54749 4.57433 4.71708 4.73537 4.75322 4.88476 5.00758 5.02480 5.14548 5.19400 5.21846 5.31290 5.42368 5.52020 6.00086 6.57668 6.91472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.101 4.101 3 Si 0.784 3.216 4 C -0.084 4.084 5 C -0.672 4.672 6 S 2.732 3.268 7 O -0.969 6.969 8 O -0.981 6.981 9 N -1.107 6.107 10 C 0.144 3.856 11 H 0.088 0.912 12 C -0.140 4.140 13 C -0.107 4.107 14 C -0.090 4.090 15 H 0.071 0.929 16 C 0.075 3.925 17 O -0.597 6.597 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.102 4.102 21 C -0.199 4.199 22 S 0.131 5.869 23 H 0.418 0.582 24 H 0.120 0.880 25 H -0.280 1.280 26 H -0.247 1.247 27 H 0.429 0.571 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.395 0.605 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.180 0.820 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -1.265 2.387 5.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.380 6.380 2 C -0.210 4.210 3 Si 0.683 3.317 4 C -0.204 4.204 5 C -0.771 4.771 6 S 2.819 3.181 7 O -0.958 6.958 8 O -0.971 6.971 9 N -0.870 5.870 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.179 4.179 13 C -0.145 4.145 14 C -0.109 4.109 15 H 0.090 0.910 16 C -0.003 4.003 17 O -0.406 6.406 18 C -0.148 4.148 19 C -0.163 4.163 20 C -0.130 4.130 21 C -0.334 4.334 22 S 0.394 5.606 23 H 0.272 0.728 24 H 0.138 0.862 25 H -0.206 1.206 26 H -0.172 1.172 27 H 0.266 0.734 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.244 0.756 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.197 0.803 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 5.757 0.800 2.157 6.200 hybrid contribution -0.619 -1.916 0.965 2.233 sum 5.138 -1.116 3.122 6.115 Atomic orbital electron populations 1.86352 1.16404 1.87184 1.48094 1.25052 0.86790 1.13590 0.95590 0.93311 0.79040 0.73499 0.85874 1.24047 0.99505 0.96679 1.00148 1.29970 1.25656 1.10346 1.11150 1.00777 0.73093 0.72051 0.72204 1.93555 1.48492 1.71650 1.82127 1.93511 1.85884 1.85629 1.32060 1.55523 1.87566 1.24680 1.19189 1.21105 0.95535 1.00875 0.78690 0.89385 1.22072 0.95780 1.02633 0.97401 1.21463 1.00426 0.98305 0.94335 1.21219 0.96096 0.98789 0.94769 0.91027 1.22330 0.82077 0.99491 0.96358 1.86443 1.27124 1.93557 1.33435 1.21514 0.93928 1.03684 0.95685 1.21900 1.00825 0.97491 0.96061 1.20167 0.95663 1.02453 0.94685 1.26305 1.03418 0.98587 1.05058 1.84458 1.26376 1.29527 1.20260 0.72763 0.86232 1.20564 1.17214 0.73383 0.92441 0.90761 0.92290 0.91740 0.92385 0.92931 0.75597 0.89491 0.90452 0.89955 0.89000 0.80338 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.15 9.48 -124.99 -1.19 -4.33 16 2 C -0.10 -0.37 2.35 71.24 0.17 -0.20 16 3 Si 0.78 -0.76 31.27 68.60 2.15 1.39 16 4 C -0.08 -0.61 5.77 24.59 0.14 -0.47 16 5 C -0.67 -4.71 5.72 21.22 0.12 -4.59 16 6 S 2.73 23.44 4.12 -56.49 -0.23 23.20 16 7 O -0.97 -14.66 16.27 -120.57 -1.96 -16.62 16 8 O -0.98 -12.38 17.05 -122.94 -2.10 -14.47 16 9 N -1.11 -0.77 5.23 -169.40 -0.89 -1.65 16 10 C 0.14 -0.17 1.52 44.99 0.07 -0.10 16 11 H 0.09 -0.12 6.24 -2.38 -0.01 -0.14 16 12 C -0.14 -0.31 5.53 30.59 0.17 -0.14 16 13 C -0.11 -0.14 5.10 30.60 0.16 0.01 16 14 C -0.09 0.19 2.43 -10.79 -0.03 0.17 16 15 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 16 C 0.07 -0.20 6.43 71.98 0.46 0.26 16 17 O -0.60 -0.65 13.19 -148.98 -1.97 -2.61 16 18 C -0.11 0.74 5.20 30.58 0.16 0.90 16 19 C -0.12 0.81 5.22 30.58 0.16 0.96 16 20 C -0.10 -0.14 9.04 21.22 0.19 0.06 16 21 C -0.20 0.08 11.23 66.72 0.75 0.83 16 22 S 0.13 0.46 20.88 -56.49 -1.18 -0.72 16 23 H 0.42 -2.23 8.86 -74.06 -0.66 -2.89 16 24 H 0.12 0.03 7.96 -2.39 -0.02 0.01 16 25 H -0.28 -1.71 7.11 99.48 0.71 -1.00 16 26 H -0.25 -0.21 7.11 99.48 0.71 0.49 16 27 H 0.43 -1.53 8.85 -96.75 -0.86 -2.38 16 28 H 0.06 0.40 7.77 -2.39 -0.02 0.38 16 29 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 30 H 0.06 0.28 7.82 -2.39 -0.02 0.27 16 31 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.39 -2.76 9.12 -74.05 -0.68 -3.43 16 35 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.09 -0.88 7.36 -2.39 -0.02 -0.90 16 39 H 0.18 -0.85 4.55 -2.91 -0.01 -0.86 16 40 H 0.21 -1.59 8.06 -2.91 -0.02 -1.61 16 Total: 0.00 -26.81 338.96 -5.90 -32.70 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -1.05 Total: -14.59 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 2.52 Total: -2.30 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -0.89 Total: -1.65 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -7.21 Total: -38.04 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.15 Total: 1.39 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -1.41 Total: 22.49 kcal Total: -26.81 -5.90 -32.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_7866976_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.829 kcal (2) G-P(sol) polarization free energy of solvation -26.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds