Wall clock time and date at job start Tue Mar 9 2021 13:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.46959 * 2 1 4 4 C 1.34236 * 116.99679 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99821 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.84751 * 311.19237 * 6 4 3 8 8 C 1.53779 * 113.61502 * 82.50090 * 6 4 3 9 9 C 1.53781 * 87.08092 * 139.97896 * 8 6 4 10 10 F 1.39894 * 113.69195 * 220.00661 * 9 8 6 11 11 C 1.53006 * 113.61325 * 89.11374 * 9 8 6 12 12 S 1.81399 * 109.47007 * 82.50149 * 11 9 8 13 13 O 1.42097 * 110.54866 * 291.62907 * 12 11 9 14 14 O 1.42107 * 110.53812 * 68.37457 * 12 11 9 15 15 O 1.52191 * 104.45248 * 180.02562 * 12 11 9 16 16 C 1.35901 * 113.99960 * 74.99993 * 15 12 11 17 17 C 1.38730 * 120.05612 * 269.72740 * 16 15 12 18 18 C 1.38147 * 119.94033 * 179.74084 * 17 16 15 19 19 C 1.38256 * 120.05638 * 0.51485 * 18 17 16 20 20 C 1.50700 * 119.94398 * 179.74222 * 19 18 17 21 21 O 1.42899 * 109.47399 * 120.02245 * 20 19 18 22 22 Si 1.86295 * 109.47112 * 0.02562 * 20 19 18 23 23 C 1.38271 * 120.11429 * 359.76443 * 19 18 17 24 24 C 1.38137 * 120.05168 * 359.97438 * 23 19 18 25 25 C 1.53777 * 113.61262 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.46532 * 60.00110 * 1 2 3 27 27 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46967 * 300.00521 * 1 2 3 29 29 H 1.08994 * 109.47617 * 239.99459 * 2 1 3 30 30 H 1.09009 * 109.46899 * 119.99390 * 2 1 3 31 31 H 1.09001 * 113.61225 * 25.43129 * 8 6 4 32 32 H 1.08998 * 113.61260 * 254.53140 * 8 6 4 33 33 H 1.08993 * 109.46955 * 202.50634 * 11 9 8 34 34 H 1.09000 * 109.47050 * 322.50463 * 11 9 8 35 35 H 1.07998 * 120.03037 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.96693 * 180.22817 * 18 17 16 37 37 H 1.09001 * 109.47103 * 240.02079 * 20 19 18 38 38 H 0.96705 * 114.00012 * 300.00005 * 21 20 19 39 39 H 1.48500 * 110.00011 * 180.02562 * 22 20 19 40 40 H 1.48499 * 110.00021 * 301.31489 * 22 20 19 41 41 H 1.08002 * 119.97297 * 179.97438 * 23 19 18 42 42 H 1.08007 * 120.02637 * 180.02562 * 24 23 19 43 43 H 1.09003 * 113.61452 * 105.47014 * 25 6 4 44 44 H 1.08996 * 113.61631 * 334.56450 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 -0.7565 8 6 3.9856 3.5778 1.3966 9 6 5.3561 4.1430 0.9876 10 9 6.3096 4.1005 2.0103 11 6 5.2763 5.5106 0.3060 12 16 5.1596 6.8089 1.5675 13 8 3.9098 6.7399 2.2401 14 8 6.3773 6.9101 2.2929 15 8 5.0865 8.1049 0.7730 16 6 3.8813 8.3257 0.1851 17 6 3.6397 7.8623 -1.1000 18 6 2.4119 8.0834 -1.6932 19 6 1.4279 8.7751 -1.0114 20 6 0.0914 9.0200 -1.6632 21 8 -0.9395 8.4203 -0.8760 22 14 0.0857 8.2704 -3.3687 23 6 1.6682 9.2431 0.2674 24 6 2.8924 9.0199 0.8670 25 6 5.4582 2.9680 0.0013 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.0373 2.8516 2.2079 32 1 3.2285 4.3444 1.5610 33 1 6.1705 5.6688 -0.2967 34 1 4.3953 5.5463 -0.3348 35 1 4.4096 7.3259 -1.6347 36 1 2.2221 7.7197 -2.6923 37 1 -0.0856 10.0930 -1.7372 38 1 -0.8458 7.4640 -0.7677 39 1 -1.2268 8.5056 -4.0224 40 1 1.1736 8.8629 -4.1875 41 1 0.8981 9.7835 0.7977 42 1 3.0795 9.3852 1.8660 43 1 5.8904 3.2424 -0.9611 44 1 5.9124 2.0754 0.4313 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_79476_15494190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:57 Heat of formation + Delta-G solvation = -201.956575 kcal Electronic energy + Delta-G solvation = -33460.247057 eV Core-core repulsion = 28581.466405 eV Total energy + Delta-G solvation = -4878.780652 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.101 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.06804 -42.39718 -41.91387 -40.02056 -39.68261 -38.38061 -37.56790 -37.54083 -37.25377 -32.88690 -32.65067 -32.39671 -31.60679 -27.47995 -27.23955 -27.08543 -24.52585 -24.11449 -23.68687 -22.39960 -21.75127 -20.58555 -19.81488 -19.36863 -18.96184 -18.66139 -18.44044 -18.01093 -17.69254 -17.12764 -17.01591 -16.92608 -16.62819 -16.30367 -16.18992 -16.10358 -15.69726 -15.47194 -15.12884 -14.92179 -14.62970 -14.52809 -14.40577 -14.32467 -14.28154 -13.84888 -13.81073 -13.71777 -13.45332 -13.34320 -13.17866 -13.13222 -13.01529 -12.87409 -12.63716 -12.57812 -12.56576 -12.32942 -12.13156 -11.98541 -11.60008 -11.58238 -11.48232 -10.72222 -10.44056 -10.14156 -5.24909 -1.31913 -0.29179 -0.10899 0.83300 1.01286 1.06086 1.42979 1.47531 1.80142 2.11777 2.23862 2.46142 2.62647 2.72627 2.81063 3.00202 3.16170 3.20837 3.26831 3.35541 3.46408 3.51448 3.67263 3.77595 3.81063 3.89356 3.90923 3.92928 4.00418 4.04679 4.23053 4.25691 4.26519 4.32842 4.39871 4.52195 4.53038 4.56773 4.66331 4.74328 4.74682 4.86052 4.92217 4.96227 5.06781 5.35959 5.43898 6.36938 6.61785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.475 3.525 5 O -0.500 6.500 6 C -0.107 4.107 7 H 0.136 0.864 8 C -0.147 4.147 9 C 0.103 3.897 10 F -0.179 7.179 11 C -0.671 4.671 12 S 2.597 3.403 13 O -0.936 6.936 14 O -0.904 6.904 15 O -0.659 6.659 16 C 0.064 3.936 17 C -0.128 4.128 18 C -0.101 4.101 19 C -0.100 4.100 20 C -0.072 4.072 21 O -0.536 6.536 22 Si 0.688 3.312 23 C -0.072 4.072 24 C -0.084 4.084 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.382 0.618 39 H -0.251 1.251 40 H -0.255 1.255 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -1.586 -5.549 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.317 3.683 5 O -0.387 6.387 6 C -0.126 4.126 7 H 0.154 0.846 8 C -0.184 4.184 9 C 0.083 3.917 10 F -0.160 7.160 11 C -0.795 4.795 12 S 2.690 3.310 13 O -0.934 6.934 14 O -0.902 6.902 15 O -0.618 6.618 16 C 0.023 3.977 17 C -0.148 4.148 18 C -0.118 4.118 19 C -0.101 4.101 20 C -0.183 4.183 21 O -0.341 6.341 22 Si 0.590 3.410 23 C -0.090 4.090 24 C -0.104 4.104 25 C -0.160 4.160 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.138 0.862 38 H 0.229 0.771 39 H -0.176 1.176 40 H -0.180 1.180 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.118 0.882 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.570 -0.718 -5.742 7.373 hybrid contribution 0.602 -0.056 -0.105 0.614 sum -3.968 -0.774 -5.847 7.109 Atomic orbital electron populations 1.21828 0.92146 1.03359 1.03756 1.23130 0.95733 0.79569 1.02875 1.86503 1.23924 1.33003 1.83581 1.23134 0.80938 0.91761 0.72499 1.90712 1.60543 1.42686 1.44722 1.22280 0.97208 0.92238 1.00894 0.84621 1.23848 0.95861 1.02083 0.96649 1.21520 0.89004 0.93396 0.87779 1.93011 1.65755 1.97206 1.59982 1.31292 1.14255 1.13342 1.20632 1.05592 0.75298 0.74690 0.75429 1.93671 1.44140 1.84501 1.71137 1.93701 1.46397 1.83414 1.66730 1.85790 1.41289 1.60689 1.74067 1.18144 0.81002 1.05060 0.93530 1.21300 0.98527 1.01839 0.93112 1.20925 0.92317 0.98651 0.99956 1.20658 0.96614 0.97450 0.95426 1.25140 0.85130 1.02821 1.05180 1.86544 1.47046 1.26647 1.73859 0.94855 0.81053 0.90566 0.74569 1.21036 0.95939 0.97913 0.94143 1.21438 0.92137 0.96036 1.00800 1.23612 0.93598 0.98140 1.00630 0.91274 0.89963 0.91250 0.90986 0.90997 0.86606 0.86969 0.82234 0.82503 0.83630 0.83923 0.86207 0.77081 1.17575 1.17978 0.83685 0.83674 0.88205 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 10.29 37.16 0.38 0.83 16 2 C 0.06 -0.06 6.19 37.16 0.23 0.17 16 3 O -0.35 0.05 10.22 -39.27 -0.40 -0.35 16 4 C 0.47 0.12 7.48 36.01 0.27 0.39 16 5 O -0.50 -1.67 15.65 -18.75 -0.29 -1.97 16 6 C -0.11 0.30 3.91 -90.96 -0.36 -0.06 16 7 H 0.14 -0.83 7.66 -51.93 -0.40 -1.23 16 8 C -0.15 0.28 7.09 -25.92 -0.18 0.10 16 9 C 0.10 -0.12 1.79 -89.82 -0.16 -0.28 16 10 F -0.18 -0.42 16.31 2.25 0.04 -0.39 16 11 C -0.67 2.21 5.06 37.16 0.19 2.40 16 12 S 2.60 2.75 4.89 -107.50 -0.53 2.23 16 13 O -0.94 -2.09 15.68 -67.04 -1.05 -3.14 16 14 O -0.90 -4.87 17.54 -67.03 -1.18 -6.05 16 15 O -0.66 -0.40 10.05 -51.75 -0.52 -0.92 16 16 C 0.06 -0.04 4.79 -39.22 -0.19 -0.22 16 17 C -0.13 0.43 8.47 -39.43 -0.33 0.10 16 18 C -0.10 0.39 8.66 -39.61 -0.34 0.05 16 19 C -0.10 0.28 5.39 -104.60 -0.56 -0.29 16 20 C -0.07 0.21 2.82 36.01 0.10 0.32 16 21 O -0.54 1.23 12.77 -35.23 -0.45 0.78 16 22 Si 0.69 -2.54 29.78 -169.99 -5.06 -7.61 16 23 C -0.07 0.12 9.60 -39.61 -0.38 -0.26 16 24 C -0.08 0.04 9.05 -39.44 -0.36 -0.32 16 25 C -0.12 0.27 6.88 -25.94 -0.18 0.09 16 26 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 27 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 29 H 0.07 -0.08 8.13 -51.93 -0.42 -0.50 16 30 H 0.07 -0.06 8.13 -51.92 -0.42 -0.48 16 31 H 0.12 -0.18 8.09 -51.93 -0.42 -0.60 16 32 H 0.11 -0.34 7.51 -51.93 -0.39 -0.73 16 33 H 0.16 -0.91 8.14 -51.93 -0.42 -1.33 16 34 H 0.16 -1.09 5.82 -51.92 -0.30 -1.39 16 35 H 0.15 -0.96 7.53 -52.49 -0.40 -1.35 16 36 H 0.14 -0.90 4.87 -52.48 -0.26 -1.15 16 37 H 0.12 -0.31 7.96 -51.93 -0.41 -0.73 16 38 H 0.38 -2.36 8.70 45.56 0.40 -1.96 16 39 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 40 H -0.25 0.40 7.11 56.52 0.40 0.80 16 41 H 0.15 -0.38 8.06 -52.49 -0.42 -0.80 16 42 H 0.15 -0.13 8.06 -52.48 -0.42 -0.55 16 43 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 44 H 0.12 -0.07 7.43 -51.93 -0.39 -0.46 16 LS Contribution 383.20 15.07 5.77 5.77 Total: 0.00 -12.43 383.20 -11.10 -23.54 By element: Atomic # 1 Polarization: -9.36 SS G_CDS: -5.56 Total: -14.92 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.87 Total: 3.02 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -3.89 Total: -11.64 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.04 Total: -0.39 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: -5.06 Total: -7.61 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -0.53 Total: 2.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -12.43 -11.10 -23.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_15494190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.422 kcal (2) G-P(sol) polarization free energy of solvation -12.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds