Wall clock time and date at job start Tue Mar 9 2021 13:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.46959 * 2 1 4 4 C 1.34236 * 116.99679 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00080 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99821 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.84751 * 311.19237 * 6 4 3 8 8 C 1.53779 * 113.61502 * 82.50090 * 6 4 3 9 9 C 1.53781 * 87.08092 * 139.97896 * 8 6 4 10 10 F 1.39894 * 113.69195 * 220.00661 * 9 8 6 11 11 C 1.53006 * 113.61325 * 89.11374 * 9 8 6 12 12 S 1.81399 * 109.47007 * 82.50149 * 11 9 8 13 13 O 1.42097 * 110.54866 * 291.62907 * 12 11 9 14 14 O 1.42107 * 110.53812 * 68.37457 * 12 11 9 15 15 O 1.52191 * 104.45248 * 180.02562 * 12 11 9 16 16 C 1.35901 * 113.99960 * 74.99993 * 15 12 11 17 17 C 1.38730 * 120.05612 * 269.72740 * 16 15 12 18 18 C 1.38147 * 119.94033 * 179.74084 * 17 16 15 19 19 C 1.38256 * 120.05638 * 0.51485 * 18 17 16 20 20 C 1.50700 * 119.94398 * 179.74222 * 19 18 17 21 21 O 1.42899 * 109.47399 * 120.02245 * 20 19 18 22 22 Si 1.86295 * 109.47112 * 0.02562 * 20 19 18 23 23 C 1.38271 * 120.11429 * 359.76443 * 19 18 17 24 24 C 1.38137 * 120.05168 * 359.97438 * 23 19 18 25 25 C 1.53777 * 113.61262 * 179.97438 * 6 4 3 26 26 H 1.09000 * 109.46532 * 60.00110 * 1 2 3 27 27 H 1.09003 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46967 * 300.00521 * 1 2 3 29 29 H 1.08994 * 109.47617 * 239.99459 * 2 1 3 30 30 H 1.09009 * 109.46899 * 119.99390 * 2 1 3 31 31 H 1.09001 * 113.61225 * 25.43129 * 8 6 4 32 32 H 1.08998 * 113.61260 * 254.53140 * 8 6 4 33 33 H 1.08993 * 109.46955 * 202.50634 * 11 9 8 34 34 H 1.09000 * 109.47050 * 322.50463 * 11 9 8 35 35 H 1.07998 * 120.03037 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.96693 * 180.22817 * 18 17 16 37 37 H 1.09001 * 109.47103 * 240.02079 * 20 19 18 38 38 H 0.96705 * 114.00012 * 300.00005 * 21 20 19 39 39 H 1.48500 * 110.00011 * 180.02562 * 22 20 19 40 40 H 1.48499 * 110.00021 * 301.31489 * 22 20 19 41 41 H 1.08002 * 119.97297 * 179.97438 * 23 19 18 42 42 H 1.08007 * 120.02637 * 180.02562 * 24 23 19 43 43 H 1.09003 * 113.61452 * 105.47014 * 25 6 4 44 44 H 1.08996 * 113.61631 * 334.56450 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 -0.7565 8 6 3.9856 3.5778 1.3966 9 6 5.3561 4.1430 0.9876 10 9 6.3096 4.1005 2.0103 11 6 5.2763 5.5106 0.3060 12 16 5.1596 6.8089 1.5675 13 8 3.9098 6.7399 2.2401 14 8 6.3773 6.9101 2.2929 15 8 5.0865 8.1049 0.7730 16 6 3.8813 8.3257 0.1851 17 6 3.6397 7.8623 -1.1000 18 6 2.4119 8.0834 -1.6932 19 6 1.4279 8.7751 -1.0114 20 6 0.0914 9.0200 -1.6632 21 8 -0.9395 8.4203 -0.8760 22 14 0.0857 8.2704 -3.3687 23 6 1.6682 9.2431 0.2674 24 6 2.8924 9.0199 0.8670 25 6 5.4582 2.9680 0.0013 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 4.0373 2.8516 2.2079 32 1 3.2285 4.3444 1.5610 33 1 6.1705 5.6688 -0.2967 34 1 4.3953 5.5463 -0.3348 35 1 4.4096 7.3259 -1.6347 36 1 2.2221 7.7197 -2.6923 37 1 -0.0856 10.0930 -1.7372 38 1 -0.8458 7.4640 -0.7677 39 1 -1.2268 8.5056 -4.0224 40 1 1.1736 8.8629 -4.1875 41 1 0.8981 9.7835 0.7977 42 1 3.0795 9.3852 1.8660 43 1 5.8904 3.2424 -0.9611 44 1 5.9124 2.0754 0.4313 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79476_15494190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:56 Heat of formation + Delta-G solvation = -205.026556 kcal Electronic energy + Delta-G solvation = -33460.380181 eV Core-core repulsion = 28581.466405 eV Total energy + Delta-G solvation = -4878.913776 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.07702 -42.27019 -41.86457 -39.82838 -39.54743 -38.48204 -37.56312 -37.40580 -37.28636 -32.72633 -32.42337 -32.17952 -31.40664 -27.28177 -27.08293 -26.87884 -24.29358 -23.95129 -23.52670 -22.32255 -21.62934 -20.43070 -19.75895 -19.28950 -18.88053 -18.56187 -18.30015 -17.94375 -17.61046 -16.97575 -16.89387 -16.81626 -16.44357 -16.23036 -16.02891 -15.95569 -15.50452 -15.38193 -14.86731 -14.78726 -14.48320 -14.41963 -14.31253 -14.23956 -14.15227 -13.65130 -13.62422 -13.55287 -13.47672 -13.41187 -13.20198 -12.98201 -12.90779 -12.70304 -12.44854 -12.41792 -12.38057 -12.12278 -11.98993 -11.77295 -11.52451 -11.47240 -11.40233 -10.47860 -10.20002 -9.93905 -4.95258 -1.27124 -0.11390 0.14207 0.90376 1.04542 1.34051 1.59880 1.69682 2.06560 2.31776 2.35322 2.63672 2.79491 2.82489 2.99398 3.20335 3.35057 3.49335 3.56732 3.61730 3.73914 3.77922 3.86223 4.01039 4.02660 4.08835 4.13080 4.17911 4.28684 4.32073 4.37185 4.46543 4.50085 4.50867 4.65087 4.78941 4.79271 4.82733 4.88582 4.96012 4.97926 5.06265 5.12783 5.19032 5.30132 5.46399 5.67078 6.65348 6.82808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.538 6.538 6 C -0.095 4.095 7 H 0.184 0.816 8 C -0.155 4.155 9 C 0.087 3.913 10 F -0.206 7.206 11 C -0.647 4.647 12 S 2.589 3.411 13 O -0.961 6.961 14 O -0.965 6.965 15 O -0.665 6.665 16 C 0.038 3.962 17 C -0.118 4.118 18 C -0.094 4.094 19 C -0.098 4.098 20 C -0.082 4.082 21 O -0.555 6.555 22 Si 0.787 3.213 23 C -0.082 4.082 24 C -0.108 4.108 25 C -0.120 4.120 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.194 0.806 34 H 0.204 0.796 35 H 0.188 0.812 36 H 0.175 0.825 37 H 0.111 0.889 38 H 0.398 0.602 39 H -0.308 1.308 40 H -0.274 1.274 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -2.090 -8.625 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.316 3.684 5 O -0.428 6.428 6 C -0.114 4.114 7 H 0.201 0.799 8 C -0.193 4.193 9 C 0.068 3.932 10 F -0.187 7.187 11 C -0.775 4.775 12 S 2.687 3.313 13 O -0.960 6.960 14 O -0.963 6.963 15 O -0.625 6.625 16 C -0.003 4.003 17 C -0.137 4.137 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.191 4.191 21 O -0.363 6.363 22 Si 0.692 3.308 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.158 4.158 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.211 0.789 34 H 0.221 0.779 35 H 0.205 0.795 36 H 0.192 0.808 37 H 0.129 0.871 38 H 0.248 0.752 39 H -0.236 1.236 40 H -0.201 1.201 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.123 -1.192 -8.736 10.197 hybrid contribution 0.644 0.101 0.814 1.042 sum -4.479 -1.092 -7.923 9.166 Atomic orbital electron populations 1.21826 0.90596 1.04145 1.03995 1.23259 0.96982 0.79342 1.02412 1.86514 1.23844 1.33344 1.83254 1.23796 0.80738 0.92643 0.71186 1.90701 1.61272 1.44240 1.46569 1.22509 0.96765 0.90850 1.01265 0.79885 1.23920 0.96007 1.02258 0.97123 1.21909 0.88659 0.94885 0.87755 1.92962 1.66860 1.97403 1.61461 1.31164 1.18261 1.09066 1.19050 1.05516 0.73794 0.75560 0.76386 1.93629 1.44376 1.85142 1.72827 1.93628 1.48326 1.84798 1.69587 1.85763 1.41834 1.60715 1.74151 1.18505 0.80560 1.06332 0.94865 1.21752 0.99512 1.00828 0.91633 1.21266 0.91520 0.97504 1.00857 1.20765 0.97058 0.97243 0.94899 1.25356 0.84934 1.02706 1.06116 1.86511 1.47387 1.28329 1.74084 0.93828 0.76779 0.88734 0.71451 1.21066 0.95502 0.98507 0.94988 1.21517 0.93195 0.97290 1.00854 1.23614 0.94204 0.96528 1.01458 0.90602 0.88951 0.91356 0.91099 0.91926 0.88107 0.85748 0.78860 0.77913 0.79452 0.80818 0.87149 0.75150 1.23634 1.20056 0.83927 0.85003 0.85033 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.98 10.29 71.98 0.74 1.72 16 2 C 0.05 -0.12 6.19 71.98 0.45 0.33 16 3 O -0.35 0.42 10.22 -51.47 -0.53 -0.11 16 4 C 0.47 -0.13 7.48 71.24 0.53 0.40 16 5 O -0.54 -3.85 15.65 21.96 0.34 -3.50 16 6 C -0.10 0.77 3.91 -11.01 -0.04 0.73 16 7 H 0.18 -3.27 7.66 -2.39 -0.02 -3.29 16 8 C -0.16 0.71 7.09 31.12 0.22 0.93 16 9 C 0.09 -0.30 1.79 -10.28 -0.02 -0.32 16 10 F -0.21 -1.21 16.31 44.97 0.73 -0.48 16 11 C -0.65 6.11 5.06 71.98 0.36 6.47 16 12 S 2.59 6.68 4.89 -56.49 -0.28 6.41 16 13 O -0.96 -5.49 15.68 -118.57 -1.86 -7.35 16 14 O -0.97 -12.62 17.54 -118.57 -2.08 -14.70 16 15 O -0.67 -0.89 10.05 -61.53 -0.62 -1.51 16 16 C 0.04 -0.07 4.79 22.51 0.11 0.03 16 17 C -0.12 1.21 8.47 22.37 0.19 1.40 16 18 C -0.09 1.06 8.66 22.25 0.19 1.26 16 19 C -0.10 0.68 5.39 -19.85 -0.11 0.58 16 20 C -0.08 0.57 2.82 71.24 0.20 0.78 16 21 O -0.55 2.94 12.77 -148.98 -1.90 1.04 16 22 Si 0.79 -7.37 29.78 68.60 2.04 -5.33 16 23 C -0.08 0.25 9.60 22.25 0.21 0.46 16 24 C -0.11 -0.02 9.05 22.36 0.20 0.19 16 25 C -0.12 0.75 6.88 31.11 0.21 0.97 16 26 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.07 -0.15 8.13 -2.39 -0.02 -0.17 16 30 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 31 H 0.10 -0.18 8.09 -2.39 -0.02 -0.20 16 32 H 0.12 -0.90 7.51 -2.39 -0.02 -0.92 16 33 H 0.19 -3.04 8.14 -2.39 -0.02 -3.05 16 34 H 0.20 -3.92 5.82 -2.39 -0.01 -3.93 16 35 H 0.19 -3.60 7.53 -2.91 -0.02 -3.62 16 36 H 0.18 -3.07 4.87 -2.91 -0.01 -3.08 16 37 H 0.11 -0.59 7.96 -2.39 -0.02 -0.61 16 38 H 0.40 -5.48 8.70 -74.05 -0.64 -6.12 16 39 H -0.31 -0.06 7.11 99.48 0.71 0.64 16 40 H -0.27 1.64 7.11 99.48 0.71 2.35 16 41 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 42 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.13 -1.67 8.10 -2.39 -0.02 -1.69 16 44 H 0.10 -0.09 7.43 -2.39 -0.02 -0.10 16 Total: 0.00 -35.47 383.20 -0.24 -35.71 By element: Atomic # 1 Polarization: -26.54 SS G_CDS: 0.44 Total: -26.10 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 3.46 Total: 15.92 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -6.64 Total: -26.13 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.73 Total: -0.48 kcal Atomic # 14 Polarization: -7.37 SS G_CDS: 2.04 Total: -5.33 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -0.28 Total: 6.41 kcal Total: -35.47 -0.24 -35.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_15494190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.317 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds