Wall clock time and date at job start Tue Mar 9 2021 13:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47199 * 2 1 4 4 C 1.34226 * 116.99908 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00060 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99965 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.47580 * 59.99931 * 6 4 3 8 8 C 1.52998 * 109.47465 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.47340 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46829 * 299.99534 * 9 8 6 11 11 F 1.39902 * 109.47113 * 299.99724 * 10 9 8 12 12 C 1.53009 * 109.46680 * 180.02562 * 10 9 8 13 13 S 1.81397 * 109.46705 * 185.00158 * 12 10 9 14 14 O 1.42097 * 110.54633 * 68.37423 * 13 12 10 15 15 O 1.42106 * 110.54239 * 291.62239 * 13 12 10 16 16 O 1.52202 * 104.44771 * 179.97438 * 13 12 10 17 17 C 1.35898 * 114.00106 * 75.00265 * 16 13 12 18 18 C 1.38733 * 120.06190 * 89.99277 * 17 16 13 19 19 C 1.38143 * 119.94722 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05458 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.94183 * 179.97438 * 20 19 18 22 22 O 1.42903 * 109.47131 * 299.99242 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.97438 * 21 20 19 24 24 C 1.38266 * 120.11357 * 0.26829 * 20 19 18 25 25 C 1.38148 * 120.05160 * 359.45039 * 24 20 19 26 26 C 1.52996 * 109.47048 * 60.00391 * 10 9 8 27 27 C 1.52997 * 109.46986 * 299.99513 * 26 10 9 28 28 H 1.08997 * 109.47223 * 299.99985 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99721 * 1 2 3 30 30 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46684 * 240.00247 * 2 1 3 32 32 H 1.08993 * 109.46841 * 120.00317 * 2 1 3 33 33 H 1.08996 * 109.47214 * 59.99172 * 8 6 4 34 34 H 1.09005 * 109.46398 * 300.00020 * 8 6 4 35 35 H 1.09001 * 109.46904 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47105 * 59.99623 * 9 8 6 37 37 H 1.08996 * 109.47360 * 65.00230 * 12 10 9 38 38 H 1.09000 * 109.47207 * 304.99709 * 12 10 9 39 39 H 1.08006 * 120.02574 * 0.02562 * 18 17 16 40 40 H 1.08000 * 119.97202 * 179.97438 * 19 18 17 41 41 H 1.08999 * 109.47358 * 59.99601 * 21 20 19 42 42 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 43 43 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 44 44 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 45 45 H 1.07998 * 119.97551 * 179.73033 * 24 20 19 46 46 H 1.07999 * 120.02807 * 180.27340 * 25 24 20 47 47 H 1.08996 * 109.47299 * 60.00124 * 26 10 9 48 48 H 1.08999 * 109.46869 * 179.97438 * 26 10 9 49 49 H 1.09004 * 109.47036 * 300.00194 * 27 26 10 50 50 H 1.09001 * 109.46904 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4693 0.8911 8 6 5.4487 2.8573 0.0010 9 6 6.0334 4.2711 0.0010 10 6 5.5619 5.0180 -1.2483 11 9 5.9931 4.3350 -2.3905 12 6 6.1472 6.4317 -1.2486 13 16 5.4718 7.3653 -2.6495 14 8 4.0866 7.6184 -2.4588 15 8 5.9588 6.8429 -3.8781 16 8 6.1220 8.7372 -2.5403 17 6 7.4247 8.7638 -2.9264 18 6 7.7525 9.0271 -4.2485 19 6 9.0775 9.0541 -4.6382 20 6 10.0767 8.8185 -3.7120 21 6 11.5213 8.8480 -4.1401 22 8 11.7406 7.8562 -5.1453 23 14 12.6116 8.4956 -2.6710 24 6 9.7525 8.5498 -2.3950 25 6 8.4291 8.5274 -1.9991 26 6 4.0340 5.0981 -1.2482 27 6 3.4492 3.6843 -1.2481 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.7846 2.3255 -0.8891 34 1 5.7846 2.3247 0.8908 35 1 7.1220 4.2140 0.0014 36 1 5.6975 4.8032 0.8910 37 1 7.2320 6.3757 -1.3384 38 1 5.8851 6.9337 -0.3172 39 1 6.9724 9.2116 -4.9723 40 1 9.3331 9.2586 -5.6674 41 1 11.7611 9.8322 -4.5423 42 1 11.5469 6.9539 -4.8565 43 1 12.2729 7.1701 -2.0935 44 1 14.0389 8.5212 -3.0801 45 1 10.5345 8.3618 -1.6743 46 1 8.1765 8.3219 -0.9693 47 1 3.6981 5.6303 -0.3583 48 1 3.6981 5.6306 -2.1379 49 1 3.7851 3.1521 -2.1382 50 1 2.3607 3.7414 -1.2485 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_79476_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:53:13 Heat of formation + Delta-G solvation = -241.579591 kcal Electronic energy + Delta-G solvation = -37626.124467 eV Core-core repulsion = 32434.550394 eV Total energy + Delta-G solvation = -5191.574073 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.06593 -42.29500 -41.79639 -39.88888 -39.11287 -38.48195 -37.68912 -37.53233 -37.36758 -34.23735 -32.65325 -32.42313 -32.15158 -32.07712 -29.07703 -26.96220 -25.16962 -24.29826 -24.20934 -23.65691 -23.35671 -21.96030 -21.54418 -20.86103 -19.62492 -19.01155 -18.83581 -18.68556 -18.42283 -17.91580 -17.71550 -17.22970 -17.04825 -16.75154 -16.58227 -16.32286 -16.21432 -16.15090 -15.49948 -15.33098 -15.04071 -14.88547 -14.83564 -14.55483 -14.48640 -14.39249 -14.26570 -14.03452 -13.75396 -13.70621 -13.54554 -13.46781 -13.43520 -13.29570 -13.19486 -13.18135 -13.09297 -12.93291 -12.61175 -12.46888 -12.41429 -12.29834 -12.17987 -11.95820 -11.75741 -11.69076 -11.57724 -11.36201 -11.12401 -10.69328 -10.23543 -10.00090 -4.90083 -1.26079 -0.14272 0.10113 0.89596 1.05365 1.29681 1.59177 1.62545 2.01880 2.29370 2.34098 2.72251 2.85065 3.09861 3.31565 3.34546 3.36606 3.51058 3.51390 3.57402 3.68366 3.70079 3.78702 3.88994 3.94367 4.01337 4.02402 4.06306 4.13054 4.15702 4.23807 4.29016 4.29820 4.33936 4.53760 4.54264 4.61544 4.76083 4.77726 4.78588 4.79607 4.87026 4.89676 4.93361 4.93954 5.00311 5.07766 5.08409 5.11822 5.24816 5.24956 5.41565 5.63140 6.46863 6.61921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.149 0.851 8 C -0.110 4.110 9 C -0.121 4.121 10 C 0.125 3.875 11 F -0.213 7.213 12 C -0.665 4.665 13 S 2.583 3.417 14 O -0.951 6.951 15 O -0.975 6.975 16 O -0.663 6.663 17 C 0.040 3.960 18 C -0.111 4.111 19 C -0.084 4.084 20 C -0.098 4.098 21 C -0.092 4.092 22 O -0.548 6.548 23 Si 0.775 3.225 24 C -0.097 4.097 25 C -0.119 4.119 26 C -0.177 4.177 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.175 0.825 38 H 0.209 0.791 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.388 0.612 43 H -0.269 1.269 44 H -0.308 1.308 45 H 0.174 0.826 46 H 0.187 0.813 47 H 0.137 0.863 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 3.550 8.760 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.096 4.096 7 H 0.166 0.834 8 C -0.148 4.148 9 C -0.159 4.159 10 C 0.105 3.895 11 F -0.194 7.194 12 C -0.794 4.794 13 S 2.683 3.317 14 O -0.949 6.949 15 O -0.974 6.974 16 O -0.622 6.622 17 C -0.001 4.001 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.200 4.200 22 O -0.357 6.357 23 Si 0.679 3.321 24 C -0.114 4.114 25 C -0.138 4.138 26 C -0.215 4.215 27 C -0.148 4.148 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.193 0.807 38 H 0.226 0.774 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.237 0.763 43 H -0.195 1.195 44 H -0.237 1.237 45 H 0.191 0.809 46 H 0.205 0.795 47 H 0.155 0.845 48 H 0.092 0.908 49 H 0.076 0.924 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.558 3.559 8.186 9.286 hybrid contribution -0.384 -1.635 -1.123 2.021 sum 2.174 1.923 7.063 7.637 Atomic orbital electron populations 1.21825 0.90632 1.04255 1.03794 1.23246 0.96964 0.79414 1.02381 1.86514 1.24239 1.33395 1.83444 1.24279 0.80589 0.93291 0.71049 1.90672 1.61147 1.44460 1.46699 1.21298 0.96636 0.88505 1.03124 0.83369 1.21474 0.91646 0.97786 1.03909 1.22161 1.03246 0.94338 0.96175 1.20832 0.94788 0.88378 0.85480 1.92944 1.91317 1.81758 1.53351 1.31447 1.16130 1.08148 1.23637 1.05711 0.74901 0.73878 0.77225 1.93624 1.31189 1.82741 1.87388 1.93644 1.80809 1.79641 1.43259 1.85715 1.32275 1.57372 1.86843 1.18470 0.77864 1.09065 0.94664 1.21538 0.98570 0.98258 0.94796 1.21095 0.90482 0.97579 1.01085 1.20714 0.96648 0.98293 0.94321 1.25445 0.95714 0.96473 1.02339 1.86603 1.89665 1.20007 1.39405 0.94196 0.74592 0.84834 0.78455 1.21279 0.96205 0.98342 0.95555 1.21748 0.91410 0.99723 1.00966 1.22800 0.92393 0.99049 1.07246 1.21457 1.02794 0.94270 0.96257 0.90972 0.91405 0.88615 0.91832 0.91195 0.92639 0.89341 0.87979 0.85276 0.80688 0.77409 0.84895 0.83762 0.85073 0.76251 1.19538 1.23666 0.80889 0.79538 0.84525 0.90781 0.92366 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.38 10.12 -51.38 -0.52 -1.90 16 4 C 0.46 2.21 7.25 71.23 0.52 2.73 16 5 O -0.54 -6.16 15.73 21.96 0.35 -5.81 16 6 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.15 -1.34 8.14 -2.39 -0.02 -1.36 16 8 C -0.11 0.27 4.37 30.59 0.13 0.41 16 9 C -0.12 1.04 5.00 30.59 0.15 1.19 16 10 C 0.12 -0.42 0.89 -10.79 -0.01 -0.43 16 11 F -0.21 -1.06 15.33 44.97 0.69 -0.37 16 12 C -0.66 5.36 4.78 71.99 0.34 5.71 16 13 S 2.58 8.48 4.41 -56.49 -0.25 8.23 16 14 O -0.95 -8.19 15.64 -118.57 -1.85 -10.05 16 15 O -0.98 -10.38 15.96 -118.57 -1.89 -12.28 16 16 O -0.66 -1.45 10.05 -61.50 -0.62 -2.07 16 17 C 0.04 0.03 4.80 22.51 0.11 0.14 16 18 C -0.11 -0.33 9.05 22.37 0.20 -0.13 16 19 C -0.08 0.01 9.60 22.25 0.21 0.23 16 20 C -0.10 0.39 5.39 -19.85 -0.11 0.28 16 21 C -0.09 0.43 2.82 71.23 0.20 0.63 16 22 O -0.55 0.10 12.77 -148.98 -1.90 -1.80 16 23 Si 0.78 -5.44 29.79 68.60 2.04 -3.39 16 24 C -0.10 0.76 8.66 22.26 0.19 0.95 16 25 C -0.12 0.84 8.46 22.37 0.19 1.02 16 26 C -0.18 0.44 4.32 30.59 0.13 0.57 16 27 C -0.11 0.10 5.01 30.60 0.15 0.25 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 33 H 0.05 0.18 7.76 -2.39 -0.02 0.17 16 34 H 0.09 -0.26 8.10 -2.38 -0.02 -0.28 16 35 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.13 -2.02 8.14 -2.39 -0.02 -2.04 16 37 H 0.18 -2.23 6.60 -2.39 -0.02 -2.25 16 38 H 0.21 -3.71 8.14 -2.39 -0.02 -3.73 16 39 H 0.13 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 41 H 0.13 -0.83 7.96 -2.39 -0.02 -0.84 16 42 H 0.39 -2.16 8.70 -74.06 -0.64 -2.81 16 43 H -0.27 1.28 7.10 99.48 0.71 1.99 16 44 H -0.31 -0.71 7.11 99.48 0.71 0.00 16 45 H 0.17 -2.46 4.87 -2.91 -0.01 -2.48 16 46 H 0.19 -3.01 7.49 -2.91 -0.02 -3.04 16 47 H 0.14 -1.28 8.14 -2.39 -0.02 -1.29 16 48 H 0.07 0.16 5.40 -2.39 -0.01 0.15 16 49 H 0.06 0.19 7.80 -2.39 -0.02 0.18 16 50 H 0.10 -0.22 8.11 -2.39 -0.02 -0.24 16 Total: 0.00 -33.49 413.85 -0.01 -33.50 By element: Atomic # 1 Polarization: -19.88 SS G_CDS: 0.37 Total: -19.51 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 3.58 Total: 15.43 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -6.44 Total: -33.90 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.69 Total: -0.37 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: 2.04 Total: -3.39 kcal Atomic # 16 Polarization: 8.48 SS G_CDS: -0.25 Total: 8.23 kcal Total: -33.49 -0.01 -33.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_79476_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.077 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds